Wall clock time and date at job start Tue Mar 31 2020 02:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99980 * 2 1 4 4 H 1.48504 * 109.46840 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47268 * 299.99438 * 3 2 1 6 6 H 1.48495 * 109.47543 * 59.99450 * 3 2 1 7 7 C 1.37872 * 119.99841 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99850 * 165.71752 * 7 2 1 9 9 C 1.50697 * 120.00125 * 345.72411 * 7 2 1 10 10 C 1.52997 * 115.54866 * 324.67505 * 9 7 2 11 11 N 1.46902 * 109.47068 * 148.20779 * 10 9 7 12 12 C 1.46853 * 111.00540 * 161.63681 * 11 10 9 13 13 C 1.53135 * 109.45929 * 186.31937 * 12 11 10 14 14 C 1.52590 * 109.30507 * 301.66372 * 13 12 11 15 15 C 1.53635 * 110.27245 * 178.51468 * 14 13 12 16 16 N 1.47224 * 103.58242 * 118.90510 * 15 14 13 17 17 C 1.34070 * 108.85310 * 0.23706 * 16 15 14 18 18 O 1.21513 * 123.09503 * 179.77160 * 17 16 15 19 19 O 1.33943 * 113.81736 * 359.58848 * 17 16 15 20 20 C 1.52597 * 110.40127 * 56.41684 * 14 13 12 21 21 C 1.46854 * 110.99814 * 285.98872 * 11 10 9 22 22 C 1.53001 * 117.51932 * 110.38127 * 9 7 2 23 23 C 1.52995 * 60.00161 * 107.47913 * 22 9 7 24 24 H 0.97005 * 119.99874 * 5.01541 * 1 2 3 25 25 H 1.08996 * 109.47016 * 28.20661 * 10 9 7 26 26 H 1.08995 * 109.47550 * 268.20496 * 10 9 7 27 27 H 1.09007 * 109.47419 * 66.32119 * 12 11 10 28 28 H 1.09003 * 109.46978 * 306.31522 * 12 11 10 29 29 H 1.09000 * 109.50391 * 181.71082 * 13 12 11 30 30 H 1.09007 * 109.52384 * 61.62492 * 13 12 11 31 31 H 1.09006 * 110.59721 * 0.38814 * 15 14 13 32 32 H 1.09000 * 110.73615 * 237.49857 * 15 14 13 33 33 H 0.97001 * 125.57159 * 179.97438 * 16 15 14 34 34 H 1.09002 * 109.49444 * 63.53695 * 20 14 13 35 35 H 1.09000 * 109.49756 * 183.63862 * 20 14 13 36 36 H 1.08992 * 109.47598 * 293.68571 * 21 11 10 37 37 H 1.09007 * 109.46856 * 53.68437 * 21 11 10 38 38 H 1.09002 * 117.49534 * 214.97308 * 22 9 7 39 39 H 1.08995 * 117.49787 * 359.97438 * 22 9 7 40 40 H 1.08997 * 117.50174 * 252.50851 * 23 22 9 41 41 H 1.09006 * 117.49775 * 107.49075 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0594 -1.2086 -0.2302 9 6 1.2859 -2.4788 0.3229 10 6 0.1814 -2.3707 1.3761 11 7 -0.8749 -3.3477 1.0800 12 6 -1.7157 -3.5878 2.2598 13 6 -2.7011 -4.7215 1.9619 14 6 -3.5531 -4.3447 0.7534 15 6 -4.5257 -5.4839 0.4118 16 7 -5.8522 -4.8649 0.5694 17 6 -5.6923 -3.5846 0.9338 18 8 -6.6238 -2.8296 1.1309 19 8 -4.4114 -3.2153 1.0643 20 6 -2.6646 -4.0306 -0.4468 21 6 -1.6803 -2.9194 -0.0709 22 6 1.0801 -3.4788 -0.8166 23 6 2.1010 -3.7730 0.2843 24 1 -0.4850 0.8369 -0.0734 25 1 -0.2388 -1.3652 1.3600 26 1 0.5985 -2.5744 2.3623 27 1 -2.2685 -2.6803 2.5029 28 1 -1.0855 -3.8667 3.1044 29 1 -3.3458 -4.8799 2.8264 30 1 -2.1493 -5.6367 1.7469 31 1 -4.4045 -6.3135 1.1084 32 1 -4.3795 -5.8216 -0.6142 33 1 -6.7027 -5.3096 0.4286 34 1 -2.1114 -4.9249 -0.7338 35 1 -3.2835 -3.7014 -1.2814 36 1 -2.2331 -2.0165 0.1883 37 1 -1.0243 -2.7135 -0.9168 38 1 0.1577 -4.0597 -0.8159 39 1 1.4641 -3.2074 -1.7999 40 1 3.1569 -3.6953 0.0253 41 1 1.8503 -4.5476 1.0092 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878480467.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:03:51 Heat of formation + Delta-G solvation = -30.872092 kcal Electronic energy + Delta-G solvation = -23368.415956 eV Core-core repulsion = 20056.721511 eV Total energy + Delta-G solvation = -3311.694445 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.79290 -38.58762 -37.15783 -35.44427 -34.74545 -32.19715 -32.00140 -30.65736 -27.35883 -25.72633 -24.24900 -23.15583 -22.54943 -21.95286 -20.87103 -19.90663 -18.72906 -17.40725 -16.60075 -16.37922 -16.14593 -15.19209 -14.87016 -14.68045 -14.50721 -14.32571 -13.90003 -13.69683 -13.38681 -13.33316 -12.62119 -12.33607 -12.05641 -11.83823 -11.39577 -11.31898 -11.04030 -10.92882 -10.85263 -10.69529 -10.56720 -10.30447 -10.12599 -10.08417 -9.89162 -9.45859 -9.09898 -9.05145 -8.60636 -7.95926 -7.33487 -6.01155 -4.06611 2.72472 2.76753 3.25445 3.35803 3.39458 3.50169 4.05126 4.36222 4.47160 4.62986 4.71232 5.02494 5.06207 5.19516 5.22585 5.45462 5.64763 5.67570 5.76214 5.86263 5.88155 5.99584 6.12451 6.31346 6.36856 6.53223 6.64175 6.67379 6.74685 6.86882 6.87841 7.10337 7.18236 7.32794 7.41284 7.55203 7.55954 7.89519 8.02893 8.09111 8.16396 8.56364 8.89524 9.50348 10.94122 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.023862 B = 0.005165 C = 0.004602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.120450 B = 5419.995633 C = 6083.421574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.069 3.931 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.283 1.283 7 C -0.487 4.487 8 H 0.060 0.940 9 C 0.055 3.945 10 C 0.075 3.925 11 N -0.535 5.535 12 C 0.055 3.945 13 C -0.111 4.111 14 C 0.099 3.901 15 C 0.073 3.927 16 N -0.741 5.741 17 C 0.643 3.357 18 O -0.532 6.532 19 O -0.308 6.308 20 C -0.118 4.118 21 C 0.064 3.936 22 C -0.199 4.199 23 C -0.206 4.206 24 H 0.261 0.739 25 H 0.103 0.897 26 H 0.038 0.962 27 H 0.035 0.965 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.431 0.569 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.042 0.958 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.749 -12.867 1.123 15.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.133 4.133 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.524 4.524 8 H 0.078 0.922 9 C 0.055 3.945 10 C -0.052 4.052 11 N -0.259 5.259 12 C -0.073 4.073 13 C -0.149 4.149 14 C 0.061 3.939 15 C -0.052 4.052 16 N -0.413 5.413 17 C 0.396 3.604 18 O -0.418 6.418 19 O -0.218 6.218 20 C -0.156 4.156 21 C -0.063 4.063 22 C -0.237 4.237 23 C -0.243 4.243 24 H 0.072 0.928 25 H 0.121 0.879 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.112 0.888 33 H 0.273 0.727 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.060 0.940 37 H 0.120 0.880 38 H 0.104 0.896 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.874 -12.436 1.278 14.774 hybrid contribution -0.302 1.134 0.018 1.173 sum -8.176 -11.302 1.296 14.009 Atomic orbital electron populations 1.69781 1.05837 1.26615 1.48966 1.24960 0.94815 0.98998 0.94540 0.86573 0.80340 0.83674 0.77658 1.19755 1.21124 1.20862 1.20671 0.95292 0.89872 1.46614 0.92210 1.18939 0.93982 0.87797 0.93822 1.21952 0.90710 0.96945 0.95568 1.62024 1.12203 1.47911 1.03800 1.21953 0.94480 0.96461 0.94444 1.21838 0.97130 1.00573 0.95313 1.22977 0.90213 0.82261 0.98434 1.22960 0.81703 0.96684 1.03811 1.46018 1.09590 1.11836 1.73900 1.18743 0.83342 0.82179 0.76183 1.91047 1.38695 1.55882 1.56172 1.87406 1.15498 1.36988 1.81907 1.21978 0.97125 1.02086 0.94397 1.22045 0.94394 0.93940 0.95963 1.23066 0.99240 1.07607 0.93783 1.22778 0.95433 1.02712 1.03405 0.92840 0.87916 0.94403 0.94712 0.91112 0.91266 0.88905 0.88994 0.88838 0.72710 0.89176 0.91155 0.94009 0.87999 0.89607 0.91853 0.91722 0.91402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.20 10.75 55.43 0.60 -22.60 16 2 C 0.07 1.81 5.13 -17.82 -0.09 1.72 16 3 Si 0.89 20.54 29.56 -169.99 -5.03 15.52 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.49 -12.90 9.03 -34.44 -0.31 -13.21 16 8 H 0.06 1.61 7.86 -52.49 -0.41 1.19 16 9 C 0.06 1.32 2.14 -155.66 -0.33 0.99 16 10 C 0.07 1.68 4.85 -3.82 -0.02 1.66 16 11 N -0.53 -9.93 3.65 -234.53 -0.86 -10.79 16 12 C 0.06 0.89 5.36 -3.78 -0.02 0.87 16 13 C -0.11 -1.34 4.94 -26.87 -0.13 -1.47 16 14 C 0.10 1.24 0.92 -90.71 -0.08 1.16 16 15 C 0.07 0.63 7.33 -3.32 -0.02 0.60 16 16 N -0.74 -7.65 6.41 -64.81 -0.42 -8.07 16 17 C 0.64 10.07 9.16 53.74 0.49 10.56 16 18 O -0.53 -10.36 18.04 -19.11 -0.34 -10.71 16 19 O -0.31 -5.09 9.87 -38.26 -0.38 -5.46 16 20 C -0.12 -1.63 4.95 -26.87 -0.13 -1.76 16 21 C 0.06 1.20 4.17 -3.78 -0.02 1.19 16 22 C -0.20 -4.32 8.03 -26.73 -0.21 -4.54 16 23 C -0.21 -4.42 9.94 -26.73 -0.27 -4.68 16 24 H 0.26 6.75 8.32 -40.82 -0.34 6.41 16 25 H 0.10 2.63 4.92 -51.93 -0.26 2.37 16 26 H 0.04 0.83 7.82 -51.93 -0.41 0.42 16 27 H 0.03 0.63 7.95 -51.93 -0.41 0.22 16 28 H 0.07 1.07 7.93 -51.93 -0.41 0.66 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.09 0.58 7.71 -51.93 -0.40 0.18 16 32 H 0.09 0.63 7.72 -51.93 -0.40 0.23 16 33 H 0.43 3.27 8.96 -40.82 -0.37 2.90 16 34 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.04 0.91 7.95 -51.93 -0.41 0.50 16 37 H 0.10 2.17 5.53 -51.92 -0.29 1.88 16 38 H 0.09 1.72 5.49 -51.93 -0.29 1.43 16 39 H 0.06 1.43 8.14 -51.93 -0.42 1.00 16 40 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 320.70 15.07 4.83 4.83 Total: -1.00 -30.18 320.70 -8.89 -39.07 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -6.14 Total: 5.14 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: -1.15 Total: -6.93 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: -0.68 Total: -41.46 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -0.72 Total: -16.17 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.03 Total: 15.52 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.18 -8.89 -39.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878480467.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.196 kcal (2) G-P(sol) polarization free energy of solvation -30.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds