Wall clock time and date at job start Tue Mar 31 2020 02:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99980 * 2 1 4 4 H 1.48504 * 109.46840 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47268 * 299.99438 * 3 2 1 6 6 H 1.48495 * 109.47543 * 59.99450 * 3 2 1 7 7 C 1.37872 * 119.99841 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99850 * 165.71752 * 7 2 1 9 9 C 1.50697 * 120.00125 * 345.72411 * 7 2 1 10 10 C 1.52997 * 115.54866 * 324.67505 * 9 7 2 11 11 N 1.46902 * 109.47068 * 148.20779 * 10 9 7 12 12 C 1.46853 * 111.00540 * 161.63681 * 11 10 9 13 13 C 1.53135 * 109.45929 * 186.31937 * 12 11 10 14 14 C 1.52590 * 109.30507 * 301.66372 * 13 12 11 15 15 C 1.53635 * 110.27245 * 178.51468 * 14 13 12 16 16 N 1.47224 * 103.58242 * 118.90510 * 15 14 13 17 17 C 1.34070 * 108.85310 * 0.23706 * 16 15 14 18 18 O 1.21513 * 123.09503 * 179.77160 * 17 16 15 19 19 O 1.33943 * 113.81736 * 359.58848 * 17 16 15 20 20 C 1.52597 * 110.40127 * 56.41684 * 14 13 12 21 21 C 1.46854 * 110.99814 * 285.98872 * 11 10 9 22 22 C 1.53001 * 117.51932 * 110.38127 * 9 7 2 23 23 C 1.52995 * 60.00161 * 107.47913 * 22 9 7 24 24 H 0.97005 * 119.99874 * 5.01541 * 1 2 3 25 25 H 1.08996 * 109.47016 * 28.20661 * 10 9 7 26 26 H 1.08995 * 109.47550 * 268.20496 * 10 9 7 27 27 H 1.09007 * 109.47419 * 66.32119 * 12 11 10 28 28 H 1.09003 * 109.46978 * 306.31522 * 12 11 10 29 29 H 1.09000 * 109.50391 * 181.71082 * 13 12 11 30 30 H 1.09007 * 109.52384 * 61.62492 * 13 12 11 31 31 H 1.09006 * 110.59721 * 0.38814 * 15 14 13 32 32 H 1.09000 * 110.73615 * 237.49857 * 15 14 13 33 33 H 0.97001 * 125.57159 * 179.97438 * 16 15 14 34 34 H 1.09002 * 109.49444 * 63.53695 * 20 14 13 35 35 H 1.09000 * 109.49756 * 183.63862 * 20 14 13 36 36 H 1.08992 * 109.47598 * 293.68571 * 21 11 10 37 37 H 1.09007 * 109.46856 * 53.68437 * 21 11 10 38 38 H 1.09002 * 117.49534 * 214.97308 * 22 9 7 39 39 H 1.08995 * 117.49787 * 359.97438 * 22 9 7 40 40 H 1.08997 * 117.50174 * 252.50851 * 23 22 9 41 41 H 1.09006 * 117.49775 * 107.49075 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0594 -1.2086 -0.2302 9 6 1.2859 -2.4788 0.3229 10 6 0.1814 -2.3707 1.3761 11 7 -0.8749 -3.3477 1.0800 12 6 -1.7157 -3.5878 2.2598 13 6 -2.7011 -4.7215 1.9619 14 6 -3.5531 -4.3447 0.7534 15 6 -4.5257 -5.4839 0.4118 16 7 -5.8522 -4.8649 0.5694 17 6 -5.6923 -3.5846 0.9338 18 8 -6.6238 -2.8296 1.1309 19 8 -4.4114 -3.2153 1.0643 20 6 -2.6646 -4.0306 -0.4468 21 6 -1.6803 -2.9194 -0.0709 22 6 1.0801 -3.4788 -0.8166 23 6 2.1010 -3.7730 0.2843 24 1 -0.4850 0.8369 -0.0734 25 1 -0.2388 -1.3652 1.3600 26 1 0.5985 -2.5744 2.3623 27 1 -2.2685 -2.6803 2.5029 28 1 -1.0855 -3.8667 3.1044 29 1 -3.3458 -4.8799 2.8264 30 1 -2.1493 -5.6367 1.7469 31 1 -4.4045 -6.3135 1.1084 32 1 -4.3795 -5.8216 -0.6142 33 1 -6.7027 -5.3096 0.4286 34 1 -2.1114 -4.9249 -0.7338 35 1 -3.2835 -3.7014 -1.2814 36 1 -2.2331 -2.0165 0.1883 37 1 -1.0243 -2.7135 -0.9168 38 1 0.1577 -4.0597 -0.8159 39 1 1.4641 -3.2074 -1.7999 40 1 3.1569 -3.6953 0.0253 41 1 1.8503 -4.5476 1.0092 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878480467.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:03:51 Heat of formation + Delta-G solvation = -52.721737 kcal Electronic energy + Delta-G solvation = -23369.363428 eV Core-core repulsion = 20056.721511 eV Total energy + Delta-G solvation = -3312.641917 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.85346 -40.01735 -38.58551 -36.96047 -35.71321 -34.19152 -33.28951 -31.88510 -28.65007 -27.58954 -25.65034 -24.43008 -23.64045 -23.16660 -22.56995 -21.16755 -20.53257 -18.51644 -18.07814 -17.66076 -17.48948 -16.71796 -16.33153 -16.02523 -15.89450 -15.79010 -15.14727 -14.95365 -14.67363 -14.38996 -14.16526 -13.66939 -13.46682 -13.35776 -12.93969 -12.87634 -12.70151 -12.54321 -12.31055 -12.13929 -12.00301 -11.94632 -11.73410 -11.52715 -11.27357 -10.99215 -10.86136 -10.41493 -10.29292 -9.80359 -9.00281 -7.99603 -6.12672 1.37627 1.43235 1.52582 1.61409 1.78709 2.41481 2.60046 3.00365 3.18464 3.30899 3.54959 3.61430 3.81245 4.13241 4.26718 4.44422 4.50641 4.52058 4.59003 4.65960 4.72072 4.78044 4.81219 4.85901 4.95093 4.98841 5.11060 5.15738 5.19928 5.23617 5.42867 5.47187 5.59587 5.61851 5.81398 5.83571 6.06458 6.29551 6.30406 6.51459 6.62983 6.90113 7.06728 7.45569 8.90580 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.023862 B = 0.005165 C = 0.004602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.120450 B = 5419.995633 C = 6083.421574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.029 3.971 3 Si 0.945 3.055 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.510 4.510 8 H 0.047 0.953 9 C 0.021 3.979 10 C 0.083 3.917 11 N -0.519 5.519 12 C 0.051 3.949 13 C -0.101 4.101 14 C 0.088 3.912 15 C 0.082 3.918 16 N -0.715 5.715 17 C 0.636 3.364 18 O -0.586 6.586 19 O -0.343 6.343 20 C -0.110 4.110 21 C 0.073 3.927 22 C -0.185 4.185 23 C -0.187 4.187 24 H 0.257 0.743 25 H 0.067 0.933 26 H 0.035 0.965 27 H 0.000 1.000 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.126 0.874 31 H 0.133 0.867 32 H 0.125 0.875 33 H 0.446 0.554 34 H 0.122 0.878 35 H 0.074 0.926 36 H -0.005 1.005 37 H 0.072 0.928 38 H 0.106 0.894 39 H 0.049 0.951 40 H 0.062 0.938 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.072 -16.307 1.019 18.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.171 4.171 3 Si 0.771 3.229 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.548 4.548 8 H 0.066 0.934 9 C 0.020 3.980 10 C -0.045 4.045 11 N -0.243 5.243 12 C -0.078 4.078 13 C -0.139 4.139 14 C 0.052 3.948 15 C -0.041 4.041 16 N -0.388 5.388 17 C 0.389 3.611 18 O -0.475 6.475 19 O -0.253 6.253 20 C -0.147 4.147 21 C -0.055 4.055 22 C -0.223 4.223 23 C -0.224 4.224 24 H 0.067 0.933 25 H 0.085 0.915 26 H 0.054 0.946 27 H 0.019 0.981 28 H 0.099 0.901 29 H 0.106 0.894 30 H 0.145 0.855 31 H 0.150 0.850 32 H 0.143 0.857 33 H 0.291 0.709 34 H 0.140 0.860 35 H 0.092 0.908 36 H 0.014 0.986 37 H 0.090 0.910 38 H 0.124 0.876 39 H 0.068 0.932 40 H 0.081 0.919 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.186 -15.935 1.160 17.952 hybrid contribution -0.130 2.213 0.054 2.217 sum -8.317 -13.722 1.214 16.091 Atomic orbital electron populations 1.69951 1.06701 1.26699 1.49395 1.25552 0.95486 1.01544 0.94537 0.85714 0.79312 0.80415 0.77420 1.19427 1.20973 1.20863 1.20921 0.94968 0.91725 1.47139 0.93433 1.19021 0.95467 0.87890 0.95623 1.21643 0.91536 0.96179 0.95111 1.62051 1.11929 1.45579 1.04787 1.22086 0.94952 0.96963 0.93758 1.21865 0.96351 0.99670 0.95994 1.23234 0.90780 0.82859 0.97954 1.23187 0.78749 0.95302 1.06863 1.45909 1.11340 1.09849 1.71746 1.18950 0.82589 0.83331 0.76268 1.90994 1.40125 1.57743 1.58682 1.87393 1.16416 1.39455 1.82055 1.21941 0.96362 1.01165 0.95275 1.21851 0.94294 0.94544 0.94825 1.22990 1.00096 1.06506 0.92690 1.22773 0.95119 1.01331 1.03150 0.93346 0.91538 0.94619 0.98114 0.90104 0.89394 0.85543 0.84956 0.85720 0.70898 0.85979 0.90778 0.98626 0.90974 0.87633 0.93223 0.91916 0.89329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.39 10.75 21.45 0.23 -49.16 16 2 C 0.03 1.57 5.13 84.65 0.43 2.00 16 3 Si 0.94 43.35 29.56 68.60 2.03 45.38 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 7 C -0.51 -27.72 9.03 25.60 0.23 -27.49 16 8 H 0.05 2.62 7.86 -2.91 -0.02 2.60 16 9 C 0.02 1.00 2.14 -52.93 -0.11 0.89 16 10 C 0.08 3.81 4.85 86.30 0.42 4.23 16 11 N -0.52 -19.04 3.65 -895.93 -3.27 -22.31 16 12 C 0.05 1.58 5.36 86.36 0.46 2.04 16 13 C -0.10 -2.07 4.94 30.50 0.15 -1.92 16 14 C 0.09 1.95 0.92 -10.85 -0.01 1.94 16 15 C 0.08 0.95 7.33 86.45 0.63 1.59 16 16 N -0.72 -12.27 6.41 -590.52 -3.78 -16.06 16 17 C 0.64 19.34 9.16 129.90 1.19 20.53 16 18 O -0.59 -23.24 18.04 19.63 0.35 -22.88 16 19 O -0.34 -11.19 9.87 -48.91 -0.48 -11.68 16 20 C -0.11 -2.75 4.95 30.51 0.15 -2.60 16 21 C 0.07 2.76 4.17 86.36 0.36 3.12 16 22 C -0.18 -7.90 8.03 30.59 0.25 -7.65 16 23 C -0.19 -7.73 9.94 30.59 0.30 -7.43 16 24 H 0.26 13.94 8.32 -92.70 -0.77 13.17 16 25 H 0.07 3.59 4.92 -2.39 -0.01 3.58 16 26 H 0.04 1.60 7.82 -2.39 -0.02 1.58 16 27 H 0.00 0.02 7.95 -2.38 -0.02 0.00 16 28 H 0.08 2.33 7.93 -2.39 -0.02 2.31 16 29 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.13 1.83 8.14 -2.38 -0.02 1.81 16 31 H 0.13 0.65 7.71 -2.38 -0.02 0.63 16 32 H 0.12 0.83 7.72 -2.39 -0.02 0.81 16 33 H 0.45 5.11 8.96 -92.71 -0.83 4.28 16 34 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.00 -0.22 7.95 -2.39 -0.02 -0.24 16 37 H 0.07 3.13 5.53 -2.38 -0.01 3.12 16 38 H 0.11 4.03 5.49 -2.39 -0.01 4.01 16 39 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 41 H 0.09 3.29 8.14 -2.38 -0.02 3.27 16 Total: -1.00 -71.58 320.70 -0.26 -71.84 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 0.21 Total: 15.61 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: 4.46 Total: -10.75 kcal Atomic # 7 Polarization: -80.70 SS G_CDS: -6.82 Total: -87.52 kcal Atomic # 8 Polarization: -34.43 SS G_CDS: -0.13 Total: -34.56 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -71.58 -0.26 -71.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878480467.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.120 kcal (2) G-P(sol) polarization free energy of solvation -71.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds