Wall clock time and date at job start Tue Mar 31 2020 01:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.62262 * 2 1 4 4 C 1.53237 * 109.63100 * 120.38404 * 2 1 3 5 5 N 1.46906 * 109.33886 * 66.07467 * 4 2 1 6 6 C 1.38569 * 111.00190 * 187.25491 * 5 4 2 7 7 C 1.39468 * 120.51296 * 180.02562 * 6 5 4 8 8 C 1.38467 * 118.30799 * 179.97438 * 7 6 5 9 9 F 1.35097 * 120.42901 * 180.02562 * 8 7 6 10 10 N 1.32786 * 119.13981 * 0.02562 * 8 7 6 11 11 C 1.31763 * 120.96369 * 359.97438 * 10 8 7 12 12 N 1.31760 * 121.86142 * 0.02562 * 11 10 8 13 13 C 1.46902 * 111.26602 * 63.10037 * 5 4 2 14 14 C 1.53236 * 109.34249 * 296.90023 * 13 5 4 15 15 H 1.08996 * 109.62755 * 294.11177 * 14 13 5 16 16 C 1.53003 * 109.62742 * 173.54066 * 14 13 5 17 17 N 1.47075 * 109.78975 * 239.51586 * 2 1 3 18 18 C 1.36938 * 120.88663 * 111.39818 * 17 2 1 19 19 H 1.08003 * 120.00428 * 152.15428 * 18 17 2 20 20 C 1.38816 * 119.99677 * 332.16137 * 18 17 2 21 21 N 1.31621 * 119.99836 * 343.36668 * 20 18 17 22 22 Si 1.86798 * 119.99775 * 163.37267 * 20 18 17 23 23 H 1.48502 * 109.47355 * 59.99777 * 22 20 18 24 24 H 1.48501 * 109.46896 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47187 * 299.99292 * 22 20 18 26 26 H 1.09007 * 109.47201 * 299.61438 * 1 2 3 27 27 H 1.09003 * 109.47107 * 59.61525 * 1 2 3 28 28 H 1.08998 * 109.46864 * 179.61340 * 1 2 3 29 29 H 1.09006 * 109.49357 * 306.12247 * 4 2 1 30 30 H 1.08993 * 109.51814 * 186.04653 * 4 2 1 31 31 H 1.07998 * 120.84481 * 359.95282 * 7 6 5 32 32 H 1.08004 * 119.06901 * 180.02562 * 11 10 8 33 33 H 1.09001 * 109.48613 * 56.86187 * 13 5 4 34 34 H 1.09003 * 109.49195 * 176.93303 * 13 5 4 35 35 H 1.09006 * 109.47217 * 303.62618 * 16 14 13 36 36 H 1.08999 * 109.47277 * 63.61945 * 16 14 13 37 37 H 1.08997 * 109.47115 * 183.62485 * 16 14 13 38 38 H 0.97001 * 119.99835 * 185.14259 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0448 -0.7300 1.2451 5 7 1.6788 -2.1503 1.1624 6 6 1.9835 -2.8112 2.3416 7 6 1.7176 -4.1734 2.4791 8 6 2.0411 -4.7879 3.6770 9 9 1.8026 -6.1055 3.8563 10 7 2.5888 -4.0654 4.6471 11 6 2.8265 -2.7798 4.4834 12 7 2.5343 -2.1560 3.3602 13 6 2.3224 -2.8004 0.0130 14 6 1.8191 -2.1551 -1.2825 15 1 0.7569 -2.3654 -1.4076 16 6 2.6012 -2.7142 -2.4728 17 7 2.0280 -0.7020 -1.1926 18 6 2.6694 -0.0210 -2.1926 19 1 3.3997 -0.5259 -2.8076 20 6 2.3811 1.3184 -2.4157 21 7 1.2874 1.8491 -1.9111 22 14 3.5453 2.3676 -3.4322 23 1 3.6649 1.7941 -4.7968 24 1 3.0140 3.7513 -3.5221 25 1 4.8823 2.3912 -2.7863 26 1 -0.3634 0.5079 0.8935 27 1 -0.3633 0.5198 -0.8865 28 1 -0.3633 -1.0276 -0.0069 29 1 1.5965 -0.2902 2.1360 30 1 3.1294 -0.6365 1.2996 31 1 1.2705 -4.7345 1.6719 32 1 3.2734 -2.2215 5.2927 33 1 3.4032 -2.6781 0.0843 34 1 2.0756 -3.8621 0.0104 35 1 3.6675 -2.5507 -2.3160 36 1 2.4073 -3.7828 -2.5654 37 1 2.2862 -2.2073 -3.3849 38 1 1.0474 2.7635 -2.1280 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882518948.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:30 Heat of formation + Delta-G solvation = 52.285469 kcal Electronic energy + Delta-G solvation = -22646.952901 eV Core-core repulsion = 19247.696884 eV Total energy + Delta-G solvation = -3399.256017 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.23931 -41.11416 -38.69620 -35.45880 -33.05786 -32.49626 -31.95572 -30.54375 -27.92814 -26.57228 -25.36448 -24.34415 -23.70189 -22.21446 -20.88713 -18.85626 -18.34727 -18.00410 -16.40616 -16.20912 -15.92448 -15.55327 -15.00044 -14.86730 -14.73040 -14.11833 -13.91955 -13.71333 -13.53609 -13.39754 -12.94592 -12.03082 -11.72803 -11.53563 -11.29071 -11.14918 -10.93831 -10.74136 -10.70999 -10.62605 -10.52833 -10.15721 -10.07737 -9.89053 -9.58416 -9.45855 -9.39508 -8.56269 -8.25972 -6.73458 -5.84502 -3.26818 0.78723 0.96663 3.22729 3.33907 3.40676 3.41507 3.46306 3.72989 4.10362 4.41539 4.70415 4.94313 5.08517 5.13170 5.29395 5.42478 5.52300 5.64057 5.81315 5.83253 6.09816 6.12445 6.20396 6.21343 6.30801 6.42629 6.57686 6.75288 6.81900 6.90464 6.96473 7.07354 7.16946 7.23662 7.58140 7.71049 7.86367 8.01417 8.38120 9.15005 9.76112 10.33391 11.23995 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.029783 B = 0.004793 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.899927 B = 5840.654216 C = 6168.318987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.194 3.806 3 H 0.102 0.898 4 C 0.050 3.950 5 N -0.458 5.458 6 C 0.392 3.608 7 C -0.276 4.276 8 C 0.366 3.634 9 F -0.105 7.105 10 N -0.584 5.584 11 C 0.357 3.643 12 N -0.561 5.561 13 C 0.052 3.948 14 C 0.170 3.830 15 H 0.039 0.961 16 C -0.138 4.138 17 N -0.584 5.584 18 C -0.256 4.256 19 H 0.071 0.929 20 C 0.008 3.992 21 N -0.899 5.899 22 Si 0.901 3.099 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.284 1.284 26 H 0.023 0.977 27 H 0.078 0.922 28 H 0.029 0.971 29 H 0.077 0.923 30 H 0.047 0.953 31 H 0.157 0.843 32 H 0.205 0.795 33 H 0.049 0.951 34 H 0.073 0.927 35 H 0.052 0.948 36 H 0.041 0.959 37 H 0.070 0.930 38 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.289 -9.410 7.462 12.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.087 3.913 3 H 0.120 0.880 4 C -0.077 4.077 5 N -0.173 5.173 6 C 0.152 3.848 7 C -0.303 4.303 8 C 0.207 3.793 9 F -0.084 7.084 10 N -0.308 5.308 11 C 0.067 3.933 12 N -0.283 5.283 13 C -0.075 4.075 14 C 0.062 3.938 15 H 0.056 0.944 16 C -0.196 4.196 17 N -0.307 5.307 18 C -0.385 4.385 19 H 0.089 0.911 20 C -0.191 4.191 21 N -0.543 5.543 22 Si 0.732 3.268 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.211 1.211 26 H 0.042 0.958 27 H 0.097 0.903 28 H 0.048 0.952 29 H 0.096 0.904 30 H 0.066 0.934 31 H 0.175 0.825 32 H 0.221 0.779 33 H 0.067 0.933 34 H 0.092 0.908 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.089 0.911 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.126 -8.739 7.982 11.889 hybrid contribution 0.643 -0.138 -0.864 1.086 sum 1.769 -8.877 7.118 11.516 Atomic orbital electron populations 1.22015 0.97725 0.99070 1.00975 1.20521 0.92768 0.96207 0.81756 0.88048 1.22972 0.99509 0.83411 1.01782 1.58699 1.52487 1.06195 0.99875 1.20309 0.84455 0.88352 0.91720 1.22017 1.11826 0.96350 1.00105 1.18080 0.92085 0.79305 0.89845 1.91642 1.91024 1.30159 1.95595 1.67822 1.20033 1.09888 1.33091 1.24631 0.89858 0.85467 0.93331 1.68547 1.16561 1.40752 1.02470 1.23030 0.96806 0.97550 0.90114 1.20494 0.96905 0.86303 0.90055 0.94367 1.21800 1.00269 0.98292 0.99231 1.44308 1.66886 1.00734 1.18754 1.19114 1.15552 0.92571 1.11290 0.91129 1.25055 0.96489 0.98503 0.99090 1.69914 1.22586 1.14958 1.46853 0.86390 0.80740 0.79701 0.80019 1.21006 1.21665 1.21100 0.95772 0.90291 0.95179 0.90418 0.93425 0.82549 0.77907 0.93252 0.90845 0.92858 0.93981 0.91114 0.93453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.98 37.16 0.33 -2.67 16 2 C 0.19 4.29 2.34 -67.49 -0.16 4.13 16 3 H 0.10 2.56 6.21 -51.93 -0.32 2.23 16 4 C 0.05 0.96 4.23 -3.70 -0.02 0.94 16 5 N -0.46 -7.86 4.16 -172.75 -0.72 -8.58 16 6 C 0.39 6.15 6.41 -154.77 -0.99 5.16 16 7 C -0.28 -3.78 9.24 -39.04 -0.36 -4.14 16 8 C 0.37 5.04 8.50 -17.05 -0.14 4.90 16 9 F -0.11 -1.38 17.30 2.25 0.04 -1.34 16 10 N -0.58 -8.16 10.45 -14.98 -0.16 -8.31 16 11 C 0.36 4.58 12.28 -92.21 -1.13 3.45 16 12 N -0.56 -8.57 8.83 -13.84 -0.12 -8.69 16 13 C 0.05 0.85 4.71 -3.70 -0.02 0.83 16 14 C 0.17 3.22 3.26 -67.49 -0.22 3.00 16 15 H 0.04 0.77 7.62 -51.93 -0.40 0.38 16 16 C -0.14 -2.33 7.95 37.16 0.30 -2.04 16 17 N -0.58 -13.25 2.73 -157.01 -0.43 -13.68 16 18 C -0.26 -6.40 8.65 -15.06 -0.13 -6.53 16 19 H 0.07 1.73 6.24 -52.48 -0.33 1.40 16 20 C 0.01 0.20 4.93 -17.43 -0.09 0.11 16 21 N -0.90 -24.05 9.77 55.49 0.54 -23.51 16 22 Si 0.90 20.64 29.59 -169.99 -5.03 15.61 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H 0.02 0.47 8.14 -51.92 -0.42 0.05 16 27 H 0.08 1.94 6.80 -51.93 -0.35 1.59 16 28 H 0.03 0.62 7.09 -51.93 -0.37 0.25 16 29 H 0.08 1.44 7.67 -51.93 -0.40 1.05 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.16 1.86 7.22 -52.49 -0.38 1.48 16 32 H 0.20 1.80 8.06 -52.48 -0.42 1.38 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 1.01 6.70 -51.93 -0.35 0.66 16 35 H 0.05 0.91 7.73 -51.93 -0.40 0.51 16 36 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.07 1.31 7.36 -51.93 -0.38 0.93 16 38 H 0.26 6.74 8.32 -40.82 -0.34 6.40 16 LS Contribution 305.23 15.07 4.60 4.60 Total: -1.00 -27.09 305.23 -8.83 -35.92 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -4.92 Total: 0.84 kcal Atomic # 6 Polarization: 9.78 SS G_CDS: -2.63 Total: 7.15 kcal Atomic # 7 Polarization: -61.89 SS G_CDS: -0.88 Total: -62.78 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.04 Total: -1.34 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.03 Total: 15.61 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.09 -8.83 -35.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882518948.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.203 kcal (2) G-P(sol) polarization free energy of solvation -27.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds