Wall clock time and date at job start Tue Mar 31 2020 01:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.62262 * 2 1 4 4 C 1.53237 * 109.63100 * 120.38404 * 2 1 3 5 5 N 1.46906 * 109.33886 * 66.07467 * 4 2 1 6 6 C 1.38569 * 111.00190 * 187.25491 * 5 4 2 7 7 C 1.39468 * 120.51296 * 180.02562 * 6 5 4 8 8 C 1.38467 * 118.30799 * 179.97438 * 7 6 5 9 9 F 1.35097 * 120.42901 * 180.02562 * 8 7 6 10 10 N 1.32786 * 119.13981 * 0.02562 * 8 7 6 11 11 C 1.31763 * 120.96369 * 359.97438 * 10 8 7 12 12 N 1.31760 * 121.86142 * 0.02562 * 11 10 8 13 13 C 1.46902 * 111.26602 * 63.10037 * 5 4 2 14 14 C 1.53236 * 109.34249 * 296.90023 * 13 5 4 15 15 H 1.08996 * 109.62755 * 294.11177 * 14 13 5 16 16 C 1.53003 * 109.62742 * 173.54066 * 14 13 5 17 17 N 1.47075 * 109.78975 * 239.51586 * 2 1 3 18 18 C 1.36938 * 120.88663 * 111.39818 * 17 2 1 19 19 H 1.08003 * 120.00428 * 152.15428 * 18 17 2 20 20 C 1.38816 * 119.99677 * 332.16137 * 18 17 2 21 21 N 1.31621 * 119.99836 * 343.36668 * 20 18 17 22 22 Si 1.86798 * 119.99775 * 163.37267 * 20 18 17 23 23 H 1.48502 * 109.47355 * 59.99777 * 22 20 18 24 24 H 1.48501 * 109.46896 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47187 * 299.99292 * 22 20 18 26 26 H 1.09007 * 109.47201 * 299.61438 * 1 2 3 27 27 H 1.09003 * 109.47107 * 59.61525 * 1 2 3 28 28 H 1.08998 * 109.46864 * 179.61340 * 1 2 3 29 29 H 1.09006 * 109.49357 * 306.12247 * 4 2 1 30 30 H 1.08993 * 109.51814 * 186.04653 * 4 2 1 31 31 H 1.07998 * 120.84481 * 359.95282 * 7 6 5 32 32 H 1.08004 * 119.06901 * 180.02562 * 11 10 8 33 33 H 1.09001 * 109.48613 * 56.86187 * 13 5 4 34 34 H 1.09003 * 109.49195 * 176.93303 * 13 5 4 35 35 H 1.09006 * 109.47217 * 303.62618 * 16 14 13 36 36 H 1.08999 * 109.47277 * 63.61945 * 16 14 13 37 37 H 1.08997 * 109.47115 * 183.62485 * 16 14 13 38 38 H 0.97001 * 119.99835 * 185.14259 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0448 -0.7300 1.2451 5 7 1.6788 -2.1503 1.1624 6 6 1.9835 -2.8112 2.3416 7 6 1.7176 -4.1734 2.4791 8 6 2.0411 -4.7879 3.6770 9 9 1.8026 -6.1055 3.8563 10 7 2.5888 -4.0654 4.6471 11 6 2.8265 -2.7798 4.4834 12 7 2.5343 -2.1560 3.3602 13 6 2.3224 -2.8004 0.0130 14 6 1.8191 -2.1551 -1.2825 15 1 0.7569 -2.3654 -1.4076 16 6 2.6012 -2.7142 -2.4728 17 7 2.0280 -0.7020 -1.1926 18 6 2.6694 -0.0210 -2.1926 19 1 3.3997 -0.5259 -2.8076 20 6 2.3811 1.3184 -2.4157 21 7 1.2874 1.8491 -1.9111 22 14 3.5453 2.3676 -3.4322 23 1 3.6649 1.7941 -4.7968 24 1 3.0140 3.7513 -3.5221 25 1 4.8823 2.3912 -2.7863 26 1 -0.3634 0.5079 0.8935 27 1 -0.3633 0.5198 -0.8865 28 1 -0.3633 -1.0276 -0.0069 29 1 1.5965 -0.2902 2.1360 30 1 3.1294 -0.6365 1.2996 31 1 1.2705 -4.7345 1.6719 32 1 3.2734 -2.2215 5.2927 33 1 3.4032 -2.6781 0.0843 34 1 2.0756 -3.8621 0.0104 35 1 3.6675 -2.5507 -2.3160 36 1 2.4073 -3.7828 -2.5654 37 1 2.2862 -2.2073 -3.3849 38 1 1.0474 2.7635 -2.1280 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882518948.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:29 Heat of formation + Delta-G solvation = 37.664009 kcal Electronic energy + Delta-G solvation = -22647.586935 eV Core-core repulsion = 19247.696884 eV Total energy + Delta-G solvation = -3399.890051 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.27575 -42.26620 -40.11519 -36.94761 -34.52007 -33.86921 -33.46157 -31.94844 -29.65550 -27.94977 -26.87426 -25.61531 -25.23280 -23.53307 -22.41934 -20.51911 -19.46315 -19.23343 -17.90345 -17.41475 -17.31896 -16.66105 -16.59693 -16.19370 -15.90362 -15.71024 -15.26517 -15.21887 -14.91338 -14.75945 -14.38261 -13.67010 -13.38179 -13.06389 -12.84060 -12.75689 -12.51972 -12.42818 -12.23584 -11.97044 -11.92753 -11.88338 -11.71485 -11.31116 -11.15510 -10.90962 -10.59169 -10.44648 -9.57481 -8.56196 -7.78877 -5.20950 -0.25065 -0.16965 1.49961 1.53041 1.57653 2.11254 2.33479 2.55262 2.61480 3.10151 3.36296 3.50979 3.54541 3.85707 3.99692 4.12618 4.23818 4.32411 4.45007 4.55688 4.57078 4.70405 4.74478 4.76877 4.94154 5.04146 5.13106 5.18933 5.28253 5.37930 5.42632 5.56953 5.70129 5.76369 5.89985 5.96168 6.05974 6.48708 6.93131 7.24208 7.92764 8.45882 9.27878 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.029783 B = 0.004793 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.899927 B = 5840.654216 C = 6168.318987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.194 3.806 3 H 0.064 0.936 4 C 0.072 3.928 5 N -0.465 5.465 6 C 0.378 3.622 7 C -0.266 4.266 8 C 0.365 3.635 9 F -0.100 7.100 10 N -0.591 5.591 11 C 0.360 3.640 12 N -0.581 5.581 13 C 0.061 3.939 14 C 0.163 3.837 15 H 0.030 0.970 16 C -0.130 4.130 17 N -0.599 5.599 18 C -0.254 4.254 19 H 0.074 0.926 20 C -0.043 4.043 21 N -0.923 5.923 22 Si 0.956 3.044 23 H -0.279 1.279 24 H -0.299 1.299 25 H -0.284 1.284 26 H 0.034 0.966 27 H 0.045 0.955 28 H 0.036 0.964 29 H 0.080 0.920 30 H 0.034 0.966 31 H 0.177 0.823 32 H 0.240 0.760 33 H 0.042 0.958 34 H 0.109 0.891 35 H 0.049 0.951 36 H 0.080 0.920 37 H 0.048 0.952 38 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.874 -11.484 8.370 14.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.087 3.913 3 H 0.082 0.918 4 C -0.056 4.056 5 N -0.180 5.180 6 C 0.138 3.862 7 C -0.293 4.293 8 C 0.205 3.795 9 F -0.079 7.079 10 N -0.315 5.315 11 C 0.072 3.928 12 N -0.303 5.303 13 C -0.066 4.066 14 C 0.057 3.943 15 H 0.047 0.953 16 C -0.188 4.188 17 N -0.323 5.323 18 C -0.384 4.384 19 H 0.092 0.908 20 C -0.239 4.239 21 N -0.569 5.569 22 Si 0.785 3.215 23 H -0.205 1.205 24 H -0.226 1.226 25 H -0.211 1.211 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.098 0.902 30 H 0.052 0.948 31 H 0.195 0.805 32 H 0.256 0.744 33 H 0.060 0.940 34 H 0.127 0.873 35 H 0.068 0.932 36 H 0.098 0.902 37 H 0.067 0.933 38 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.724 -10.855 8.909 14.148 hybrid contribution 0.471 0.401 -1.062 1.229 sum 2.195 -10.454 7.846 13.254 Atomic orbital electron populations 1.21796 0.97558 0.98933 0.99784 1.20346 0.92766 0.94944 0.83219 0.91782 1.22512 0.98318 0.84845 0.99898 1.58667 1.53327 1.05045 1.00917 1.20296 0.85497 0.89143 0.91236 1.22083 1.11135 0.95432 1.00639 1.18166 0.91890 0.79502 0.89898 1.91657 1.90925 1.29808 1.95553 1.67908 1.20012 1.10343 1.33263 1.25328 0.88865 0.85249 0.93357 1.68543 1.17070 1.41501 1.03155 1.22911 0.96152 0.99031 0.88489 1.20692 0.96890 0.84219 0.92490 0.95254 1.21718 0.99538 1.00332 0.97184 1.44513 1.66890 1.02426 1.18447 1.19397 1.15185 0.92798 1.11049 0.90812 1.25653 0.97708 0.99679 1.00830 1.70077 1.23978 1.14514 1.48367 0.85526 0.79006 0.77903 0.79036 1.20480 1.22587 1.21094 0.94739 0.93639 0.94497 0.90167 0.94752 0.80530 0.74400 0.93999 0.87282 0.93180 0.90150 0.93302 0.94396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.34 8.98 71.98 0.65 -4.69 16 2 C 0.19 8.71 2.34 44.96 0.11 8.81 16 3 H 0.06 3.36 6.21 -2.39 -0.01 3.34 16 4 C 0.07 2.71 4.23 86.38 0.37 3.08 16 5 N -0.46 -15.10 4.16 -700.44 -2.92 -18.01 16 6 C 0.38 10.95 6.41 133.10 0.85 11.80 16 7 C -0.27 -6.44 9.24 22.62 0.21 -6.23 16 8 C 0.36 8.96 8.50 84.60 0.72 9.68 16 9 F -0.10 -2.33 17.30 44.97 0.78 -1.55 16 10 N -0.59 -14.81 10.45 -201.32 -2.10 -16.91 16 11 C 0.36 8.25 12.28 180.90 2.22 10.48 16 12 N -0.58 -16.46 8.83 -197.69 -1.75 -18.21 16 13 C 0.06 1.84 4.71 86.38 0.41 2.25 16 14 C 0.16 5.99 3.26 44.96 0.15 6.14 16 15 H 0.03 1.15 7.62 -2.39 -0.02 1.13 16 16 C -0.13 -4.16 7.95 71.98 0.57 -3.59 16 17 N -0.60 -27.36 2.73 -650.66 -1.78 -29.14 16 18 C -0.25 -12.84 8.65 84.03 0.73 -12.12 16 19 H 0.07 3.61 6.24 -2.91 -0.02 3.59 16 20 C -0.04 -2.25 4.93 84.86 0.42 -1.83 16 21 N -0.92 -51.17 9.77 21.65 0.21 -50.95 16 22 Si 0.96 43.27 29.59 68.60 2.03 45.30 16 23 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 24 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 25 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 26 H 0.03 1.38 8.14 -2.38 -0.02 1.36 16 27 H 0.04 2.29 6.80 -2.39 -0.02 2.27 16 28 H 0.04 1.52 7.09 -2.39 -0.02 1.50 16 29 H 0.08 2.94 7.67 -2.38 -0.02 2.92 16 30 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.18 3.47 7.22 -2.91 -0.02 3.45 16 32 H 0.24 3.43 8.06 -2.91 -0.02 3.40 16 33 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.11 2.55 6.70 -2.39 -0.02 2.53 16 35 H 0.05 1.62 7.73 -2.38 -0.02 1.60 16 36 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.05 1.77 7.36 -2.39 -0.02 1.75 16 38 H 0.25 13.57 8.32 -92.71 -0.77 12.79 16 Total: -1.00 -59.10 305.23 2.94 -56.16 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: 1.07 Total: 9.53 kcal Atomic # 6 Polarization: 16.39 SS G_CDS: 7.39 Total: 23.78 kcal Atomic # 7 Polarization: -124.89 SS G_CDS: -8.33 Total: -133.22 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 0.78 Total: -1.55 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -59.10 2.94 -56.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882518948.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.822 kcal (2) G-P(sol) polarization free energy of solvation -59.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds