Wall clock time and date at job start Tue Mar 31 2020 01:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.78286 * 2 1 4 4 C 1.53238 * 109.63015 * 239.51851 * 2 1 3 5 5 N 1.46900 * 109.34190 * 186.46037 * 4 2 1 6 6 C 1.39111 * 111.00111 * 187.25133 * 5 4 2 7 7 N 1.32572 * 120.10882 * 359.97438 * 6 5 4 8 8 C 1.32306 * 119.93954 * 180.02562 * 7 6 5 9 9 C 1.38062 * 120.17072 * 359.97438 * 8 7 6 10 10 N 1.32348 * 120.22254 * 0.02562 * 9 8 7 11 11 C 1.32072 * 120.04856 * 359.97438 * 10 9 8 12 12 F 1.35105 * 120.07990 * 180.02562 * 11 10 9 13 13 C 1.46893 * 111.27128 * 63.10145 * 5 4 2 14 14 C 1.53248 * 109.33973 * 296.89614 * 13 5 4 15 15 H 1.08993 * 109.62756 * 294.11777 * 14 13 5 16 16 C 1.52999 * 109.78831 * 173.63283 * 14 13 5 17 17 N 1.47078 * 109.63169 * 120.48771 * 2 1 3 18 18 C 1.36936 * 120.87930 * 350.91406 * 17 2 1 19 19 H 1.07994 * 119.99956 * 52.79368 * 18 17 2 20 20 C 1.38814 * 120.00270 * 232.79170 * 18 17 2 21 21 N 1.31622 * 119.99544 * 18.88416 * 20 18 17 22 22 Si 1.86795 * 120.00187 * 198.88051 * 20 18 17 23 23 H 1.48500 * 109.47149 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47099 * 119.99997 * 22 20 18 25 25 H 1.48497 * 109.47418 * 240.00080 * 22 20 18 26 26 H 1.08996 * 109.46509 * 180.48501 * 1 2 3 27 27 H 1.08999 * 109.47122 * 300.48418 * 1 2 3 28 28 H 1.09000 * 109.47002 * 60.48719 * 1 2 3 29 29 H 1.09007 * 109.49592 * 66.49640 * 4 2 1 30 30 H 1.09000 * 109.49133 * 306.41676 * 4 2 1 31 31 H 1.08002 * 119.91278 * 180.02562 * 8 7 6 32 32 H 1.07998 * 119.89079 * 180.28008 * 9 8 7 33 33 H 1.09005 * 109.49554 * 56.85235 * 13 5 4 34 34 H 1.08999 * 109.50015 * 176.93992 * 13 5 4 35 35 H 1.09007 * 109.47163 * 292.90561 * 16 14 13 36 36 H 1.08997 * 109.47148 * 52.89987 * 16 14 13 37 37 H 1.08998 * 109.47232 * 172.89948 * 16 14 13 38 38 H 0.97003 * 119.99321 * 182.49784 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0257 0.0000 4 6 2.0448 -0.7321 -1.2438 5 7 3.5055 -0.8643 -1.1609 6 6 4.0277 -1.3773 -2.3439 7 7 3.2210 -1.6749 -3.3529 8 6 3.7211 -2.1631 -4.4763 9 6 5.0815 -2.3631 -4.6010 10 7 5.8928 -2.0683 -3.5978 11 6 5.4030 -1.5805 -2.4724 12 9 6.2307 -1.2789 -1.4481 13 6 3.9017 -1.6870 -0.0103 14 6 3.4630 -0.9939 1.2842 15 1 4.0178 -0.0638 1.4077 16 6 3.7275 -1.9124 2.4789 17 7 2.0242 -0.7028 1.1938 18 6 1.1672 -1.0766 2.1943 19 1 0.2855 -1.6552 1.9620 20 6 1.4319 -0.7116 3.5072 21 7 2.2637 0.2765 3.7607 22 14 0.6075 -1.6228 4.9142 23 1 -0.2754 -2.6839 4.3669 24 1 1.6447 -2.2400 5.7793 25 1 -0.2016 -0.6692 5.7149 26 1 -0.3632 -1.0276 0.0087 27 1 -0.3633 0.5213 0.8856 28 1 -0.3633 0.5062 -0.8943 29 1 1.7811 -0.1637 -2.1358 30 1 1.5925 -1.7225 -1.2962 31 1 3.0636 -2.4049 -5.2983 32 1 5.4853 -2.7576 -5.5216 33 1 3.4234 -2.6640 -0.0797 34 1 4.9846 -1.8110 -0.0073 35 1 3.0713 -2.7810 2.4216 36 1 4.7667 -2.2406 2.4618 37 1 3.5328 -1.3703 3.4042 38 1 2.4765 0.5079 4.6783 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882518997.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:31 Heat of formation + Delta-G solvation = 36.512847 kcal Electronic energy + Delta-G solvation = -22972.644703 eV Core-core repulsion = 19572.704734 eV Total energy + Delta-G solvation = -3399.939969 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.21176 -42.22607 -40.11475 -37.06315 -34.99953 -34.60967 -33.34452 -31.27683 -29.41471 -27.95001 -27.23525 -25.74070 -25.12143 -23.43820 -22.09479 -21.03215 -19.30475 -19.09545 -18.41733 -18.06222 -17.43569 -16.87809 -16.22231 -16.19937 -15.90496 -15.73189 -15.36875 -15.08523 -14.74210 -14.51107 -14.30374 -13.73954 -13.38637 -13.27557 -12.86854 -12.83227 -12.69178 -12.56705 -12.40555 -12.27070 -12.20166 -12.04432 -11.69177 -11.63717 -11.35461 -10.98832 -10.33950 -10.15535 -9.26482 -8.40059 -7.73479 -5.60142 -0.40947 -0.09565 1.43593 1.49251 1.57314 2.04936 2.36169 2.49151 2.63959 3.17057 3.21056 3.24366 3.48864 3.93300 4.02466 4.09831 4.24938 4.28847 4.39533 4.47400 4.54398 4.59459 4.78315 4.80430 4.85523 4.90358 4.94469 5.14567 5.20874 5.35422 5.45724 5.60207 5.62814 5.73249 5.84704 5.91269 6.12064 6.57012 6.58233 7.21361 7.76674 8.52290 9.14838 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.029066 B = 0.005423 C = 0.004888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.096581 B = 5161.516335 C = 5726.618812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.159 3.841 3 H 0.009 0.991 4 C 0.079 3.921 5 N -0.476 5.476 6 C 0.246 3.754 7 N -0.473 5.473 8 C 0.086 3.914 9 C 0.056 3.944 10 N -0.466 5.466 11 C 0.211 3.789 12 F -0.111 7.111 13 C 0.052 3.948 14 C 0.200 3.800 15 H 0.006 0.994 16 C -0.134 4.134 17 N -0.593 5.593 18 C -0.263 4.263 19 H 0.050 0.950 20 C -0.002 4.002 21 N -0.907 5.907 22 Si 0.939 3.061 23 H -0.266 1.266 24 H -0.285 1.285 25 H -0.291 1.291 26 H 0.050 0.950 27 H 0.043 0.957 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.043 0.957 31 H 0.227 0.773 32 H 0.227 0.773 33 H 0.040 0.960 34 H 0.088 0.912 35 H 0.045 0.955 36 H 0.049 0.951 37 H 0.066 0.934 38 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.589 -6.233 -16.504 17.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.053 3.947 3 H 0.026 0.974 4 C -0.049 4.049 5 N -0.192 5.192 6 C 0.011 3.989 7 N -0.193 5.193 8 C -0.076 4.076 9 C -0.105 4.105 10 N -0.186 5.186 11 C 0.051 3.949 12 F -0.090 7.090 13 C -0.075 4.075 14 C 0.093 3.907 15 H 0.024 0.976 16 C -0.192 4.192 17 N -0.318 5.318 18 C -0.393 4.393 19 H 0.067 0.933 20 C -0.201 4.201 21 N -0.548 5.548 22 Si 0.766 3.234 23 H -0.190 1.190 24 H -0.211 1.211 25 H -0.218 1.218 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.090 0.910 29 H 0.108 0.892 30 H 0.062 0.938 31 H 0.243 0.757 32 H 0.244 0.756 33 H 0.058 0.942 34 H 0.106 0.894 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.085 0.915 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.792 -5.603 -16.097 17.271 hybrid contribution -0.151 -0.491 1.381 1.473 sum 2.641 -6.093 -14.716 16.145 Atomic orbital electron populations 1.21536 0.93566 1.01358 1.00885 1.20796 0.94557 0.92943 0.86404 0.97363 1.22436 0.82840 1.00283 0.99311 1.58909 1.14666 1.45158 1.00426 1.20804 0.89753 0.94460 0.93901 1.68590 1.37366 1.11796 1.01562 1.24557 0.96026 0.92003 0.95037 1.24271 0.90881 0.97731 0.97640 1.67760 1.41454 1.09862 0.99494 1.18594 0.85335 1.03986 0.86968 1.91552 1.72121 1.90515 1.54842 1.22971 1.01034 0.93817 0.89691 1.20199 0.85323 0.94204 0.90943 0.97589 1.21846 0.98590 0.99042 0.99762 1.44335 1.02810 1.65671 1.19003 1.18821 1.06314 1.27738 0.86439 0.93257 1.26076 0.98086 0.95223 1.00729 1.70265 1.38559 1.26937 1.19079 0.85703 0.78513 0.78905 0.80303 1.19003 1.21100 1.21825 0.93080 0.93830 0.90986 0.89195 0.93836 0.75708 0.75637 0.94176 0.89381 0.93557 0.93174 0.91526 0.93905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.40 8.19 71.98 0.59 -3.82 16 2 C 0.16 6.88 3.66 44.96 0.16 7.04 16 3 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 4 C 0.08 2.93 4.13 86.38 0.36 3.28 16 5 N -0.48 -18.06 4.61 -700.16 -3.23 -21.28 16 6 C 0.25 8.06 6.41 133.09 0.85 8.91 16 7 N -0.47 -12.76 8.85 -192.42 -1.70 -14.46 16 8 C 0.09 1.41 11.21 84.58 0.95 2.36 16 9 C 0.06 0.90 11.21 84.57 0.95 1.85 16 10 N -0.47 -12.26 10.50 -195.79 -2.06 -14.32 16 11 C 0.21 6.73 8.10 84.99 0.69 7.42 16 12 F -0.11 -3.89 14.80 44.97 0.67 -3.23 16 13 C 0.05 2.06 4.63 86.39 0.40 2.46 16 14 C 0.20 9.39 3.14 44.96 0.14 9.53 16 15 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 16 C -0.13 -6.11 7.96 71.98 0.57 -5.54 16 17 N -0.59 -29.22 2.81 -650.64 -1.83 -31.05 16 18 C -0.26 -13.75 6.78 84.03 0.57 -13.18 16 19 H 0.05 2.60 7.14 -2.91 -0.02 2.58 16 20 C 0.00 -0.09 3.36 84.86 0.29 0.19 16 21 N -0.91 -51.72 11.71 21.65 0.25 -51.47 16 22 Si 0.94 42.67 29.59 68.60 2.03 44.70 16 23 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 24 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 25 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 26 H 0.05 1.92 7.56 -2.39 -0.02 1.91 16 27 H 0.04 1.84 7.69 -2.39 -0.02 1.83 16 28 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.09 3.03 7.66 -2.38 -0.02 3.01 16 30 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.23 1.33 8.06 -2.91 -0.02 1.31 16 32 H 0.23 1.23 8.06 -2.91 -0.02 1.21 16 33 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 34 H 0.09 3.33 5.53 -2.39 -0.01 3.32 16 35 H 0.05 2.08 7.68 -2.38 -0.02 2.06 16 36 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.07 3.41 4.94 -2.39 -0.01 3.40 16 38 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 Total: -1.00 -66.26 304.44 1.71 -64.55 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: 1.07 Total: 6.05 kcal Atomic # 6 Polarization: 14.00 SS G_CDS: 6.52 Total: 20.52 kcal Atomic # 7 Polarization: -124.02 SS G_CDS: -8.57 Total: -132.59 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.67 Total: -3.23 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -66.26 1.71 -64.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882518997.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.059 kcal (2) G-P(sol) polarization free energy of solvation -66.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds