Wall clock time and date at job start Tue Mar 31 2020 01:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.62987 * 2 1 4 4 C 1.53234 * 109.62584 * 239.61205 * 2 1 3 5 5 N 1.46901 * 109.34178 * 186.26487 * 4 2 1 6 6 C 1.39114 * 110.99958 * 187.25600 * 5 4 2 7 7 N 1.32565 * 120.11325 * 0.02562 * 6 5 4 8 8 C 1.32306 * 119.94088 * 179.69203 * 7 6 5 9 9 C 1.38062 * 120.16598 * 0.56506 * 8 7 6 10 10 N 1.32338 * 120.22184 * 359.43564 * 9 8 7 11 11 C 1.32069 * 120.05594 * 0.27619 * 10 9 8 12 12 F 1.35100 * 120.08296 * 179.97438 * 11 10 9 13 13 C 1.46898 * 111.26640 * 63.10583 * 5 4 2 14 14 C 1.53238 * 109.33968 * 296.89988 * 13 5 4 15 15 H 1.09007 * 109.62870 * 173.54331 * 14 13 5 16 16 C 1.53006 * 109.78842 * 294.01999 * 14 13 5 17 17 N 1.47077 * 109.78607 * 120.48958 * 2 1 3 18 18 C 1.36935 * 120.88759 * 350.96306 * 17 2 1 19 19 H 1.08001 * 119.99684 * 26.18090 * 18 17 2 20 20 C 1.38805 * 120.00431 * 206.18863 * 18 17 2 21 21 N 1.31615 * 120.00114 * 17.47743 * 20 18 17 22 22 Si 1.86803 * 120.00202 * 197.48583 * 20 18 17 23 23 H 1.48492 * 109.47489 * 89.99271 * 22 20 18 24 24 H 1.48493 * 109.47248 * 209.99696 * 22 20 18 25 25 H 1.48507 * 109.46745 * 329.99615 * 22 20 18 26 26 H 1.08998 * 109.47607 * 180.38623 * 1 2 3 27 27 H 1.09011 * 109.46765 * 300.38783 * 1 2 3 28 28 H 1.09001 * 109.46967 * 60.38200 * 1 2 3 29 29 H 1.09003 * 109.49396 * 66.31045 * 4 2 1 30 30 H 1.09004 * 109.49782 * 306.23144 * 4 2 1 31 31 H 1.08005 * 119.91529 * 180.30362 * 8 7 6 32 32 H 1.08007 * 119.88650 * 179.71049 * 9 8 7 33 33 H 1.09008 * 109.49176 * 56.85523 * 13 5 4 34 34 H 1.08993 * 109.49600 * 176.93338 * 13 5 4 35 35 H 1.08995 * 109.47029 * 179.13139 * 16 14 13 36 36 H 1.08997 * 109.46677 * 299.13478 * 16 14 13 37 37 H 1.09004 * 109.46277 * 59.12729 * 16 14 13 38 38 H 0.97003 * 120.00553 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8962 1.0266 0.0000 4 6 2.0447 -0.7301 -1.2450 5 7 3.5059 -0.8583 -1.1646 6 6 4.0274 -1.3692 -2.3488 7 7 3.2201 -1.6675 -3.3570 8 6 3.7203 -2.1475 -4.4839 9 6 5.0804 -2.3496 -4.6086 10 7 5.8924 -2.0542 -3.6062 11 6 5.4030 -1.5693 -2.4794 12 9 6.2314 -1.2679 -1.4556 13 6 3.9062 -1.6806 -0.0151 14 6 3.4677 -0.9895 1.2804 15 1 3.6589 -1.6466 2.1289 16 6 4.2428 0.3177 1.4582 17 7 2.0279 -0.7022 1.1926 18 6 1.1738 -1.0781 2.1948 19 1 0.1318 -1.2595 1.9764 20 6 1.6472 -1.2258 3.4912 21 7 2.7982 -0.6891 3.8367 22 14 0.6508 -2.1866 4.7456 23 1 1.0476 -3.6168 4.7026 24 1 0.9072 -1.6423 6.1033 25 1 -0.7948 -2.0642 4.4281 26 1 -0.3634 -1.0276 0.0069 27 1 -0.3633 0.5199 0.8866 28 1 -0.3633 0.5079 -0.8934 29 1 1.7780 -0.1619 -2.1362 30 1 1.5949 -1.7216 -1.2973 31 1 3.0627 -2.3857 -5.3068 32 1 5.4834 -2.7461 -5.5288 33 1 3.4304 -2.6589 -0.0844 34 1 4.9893 -1.8018 -0.0141 35 1 3.9160 0.8124 2.3728 36 1 5.3092 0.1017 1.5229 37 1 4.0553 0.9700 0.6052 38 1 3.1289 -0.7920 4.7428 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882518998.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:35 Heat of formation + Delta-G solvation = 57.291994 kcal Electronic energy + Delta-G solvation = -23070.514388 eV Core-core repulsion = 19671.475470 eV Total energy + Delta-G solvation = -3399.038918 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.96942 -41.09810 -38.67504 -35.43133 -33.76451 -32.69599 -31.53470 -29.93622 -27.82811 -26.59265 -25.33505 -24.39029 -23.66791 -22.24590 -20.90101 -18.74875 -18.13841 -17.94959 -17.23154 -16.41856 -15.94160 -15.19032 -14.92499 -14.67603 -14.30257 -13.95862 -13.85071 -13.65511 -13.35762 -13.18350 -12.92066 -11.95260 -11.74301 -11.66108 -11.39931 -11.28196 -11.08299 -10.97915 -10.76027 -10.61542 -10.52306 -10.10083 -10.08421 -9.71846 -9.56261 -9.40030 -9.21536 -8.51952 -7.95161 -6.72801 -5.80514 -3.22023 0.65495 0.97638 3.21740 3.36270 3.43558 3.44515 3.44715 3.79014 4.17186 4.33379 4.46328 4.92979 5.02858 5.20525 5.33521 5.39653 5.64903 5.70650 5.84242 6.00379 6.05201 6.15066 6.21640 6.26871 6.36174 6.52646 6.65176 6.82473 6.90386 6.96910 7.04041 7.13261 7.20197 7.29222 7.58094 7.68594 7.74764 7.89095 8.39653 9.18563 9.80400 10.37526 11.27348 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.026286 B = 0.005597 C = 0.005095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.938980 B = 5001.142337 C = 5494.270633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.167 3.833 3 H 0.035 0.965 4 C 0.059 3.941 5 N -0.453 5.453 6 C 0.270 3.730 7 N -0.460 5.460 8 C 0.071 3.929 9 C 0.029 3.971 10 N -0.450 5.450 11 C 0.238 3.762 12 F -0.094 7.094 13 C 0.031 3.969 14 C 0.199 3.801 15 H 0.105 0.895 16 C -0.138 4.138 17 N -0.585 5.585 18 C -0.251 4.251 19 H 0.073 0.927 20 C 0.003 3.997 21 N -0.898 5.898 22 Si 0.900 3.100 23 H -0.289 1.289 24 H -0.292 1.292 25 H -0.280 1.280 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.041 0.959 29 H 0.075 0.925 30 H 0.050 0.950 31 H 0.174 0.826 32 H 0.174 0.826 33 H 0.042 0.958 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.026 0.974 37 H 0.030 0.970 38 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.998 -2.299 -14.233 14.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.060 3.940 3 H 0.053 0.947 4 C -0.069 4.069 5 N -0.168 5.168 6 C 0.032 3.968 7 N -0.181 5.181 8 C -0.090 4.090 9 C -0.130 4.130 10 N -0.170 5.170 11 C 0.075 3.925 12 F -0.073 7.073 13 C -0.095 4.095 14 C 0.092 3.908 15 H 0.123 0.877 16 C -0.197 4.197 17 N -0.308 5.308 18 C -0.380 4.380 19 H 0.091 0.909 20 C -0.196 4.196 21 N -0.543 5.543 22 Si 0.730 3.270 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.206 1.206 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.060 0.940 29 H 0.094 0.906 30 H 0.068 0.932 31 H 0.191 0.809 32 H 0.191 0.809 33 H 0.061 0.939 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.045 0.955 37 H 0.049 0.951 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.218 -1.793 -13.827 14.118 hybrid contribution -0.391 -1.038 0.605 1.264 sum 1.827 -2.832 -13.221 13.644 Atomic orbital electron populations 1.21767 0.95395 1.01579 1.00607 1.20553 0.92916 0.94276 0.86269 0.94709 1.22722 0.82855 1.01056 1.00289 1.59019 1.14408 1.43823 0.99527 1.21080 0.89498 0.92122 0.94145 1.68598 1.36980 1.11713 1.00773 1.23625 0.94945 0.94920 0.95484 1.23255 0.90992 1.01214 0.97508 1.67644 1.40433 1.09539 0.99361 1.18545 0.85587 1.02080 0.86259 1.91613 1.71737 1.90069 1.53902 1.23381 1.00993 0.94399 0.90764 1.20455 0.83150 0.95665 0.91523 0.87718 1.21990 0.96988 0.99019 1.01672 1.44331 1.03329 1.65026 1.18133 1.19211 0.92919 1.39409 0.86496 0.90899 1.25001 0.97696 1.00139 0.96723 1.69996 1.21111 1.44874 1.18294 0.86325 0.79690 0.79985 0.80956 1.21633 1.21839 1.20558 0.92731 0.91609 0.93987 0.90620 0.93202 0.80858 0.80865 0.93921 0.89953 0.90335 0.95538 0.95057 0.93645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 7.94 37.16 0.29 -2.16 16 2 C 0.17 3.40 3.25 -67.49 -0.22 3.18 16 3 H 0.04 0.76 7.63 -51.93 -0.40 0.36 16 4 C 0.06 1.08 4.13 -3.70 -0.02 1.06 16 5 N -0.45 -8.41 4.11 -172.66 -0.71 -9.12 16 6 C 0.27 4.56 6.41 -154.59 -0.99 3.57 16 7 N -0.46 -6.86 8.85 -12.17 -0.11 -6.97 16 8 C 0.07 0.76 11.21 -17.41 -0.20 0.57 16 9 C 0.03 0.32 11.21 -17.40 -0.19 0.12 16 10 N -0.45 -6.59 10.50 -13.24 -0.14 -6.73 16 11 C 0.24 3.93 8.10 -16.93 -0.14 3.80 16 12 F -0.09 -1.64 14.80 2.25 0.03 -1.60 16 13 C 0.03 0.61 4.73 -3.70 -0.02 0.59 16 14 C 0.20 4.54 2.34 -67.49 -0.16 4.38 16 15 H 0.11 2.69 6.10 -51.92 -0.32 2.37 16 16 C -0.14 -3.08 8.97 37.16 0.33 -2.75 16 17 N -0.59 -13.82 2.73 -157.01 -0.43 -14.25 16 18 C -0.25 -6.45 8.74 -15.06 -0.13 -6.58 16 19 H 0.07 1.84 6.17 -52.49 -0.32 1.51 16 20 C 0.00 0.08 4.93 -17.43 -0.09 -0.01 16 21 N -0.90 -24.51 9.77 55.49 0.54 -23.97 16 22 Si 0.90 21.03 29.59 -169.99 -5.03 16.00 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H 0.05 1.00 7.56 -51.93 -0.39 0.61 16 27 H 0.06 1.27 7.58 -51.92 -0.39 0.88 16 28 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 1.29 7.66 -51.93 -0.40 0.89 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.17 1.15 8.06 -52.48 -0.42 0.72 16 32 H 0.17 1.12 8.06 -52.48 -0.42 0.70 16 33 H 0.04 0.86 8.14 -51.92 -0.42 0.44 16 34 H 0.08 1.55 5.53 -51.93 -0.29 1.26 16 35 H 0.08 1.98 6.89 -51.93 -0.36 1.62 16 36 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.03 0.68 7.10 -51.93 -0.37 0.31 16 38 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 302.85 15.07 4.56 4.56 Total: -1.00 -28.63 302.85 -7.70 -36.33 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -4.91 Total: -0.01 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: -1.52 Total: 5.76 kcal Atomic # 7 Polarization: -60.19 SS G_CDS: -0.84 Total: -61.04 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.03 Total: -1.60 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.03 Total: 16.00 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.63 -7.70 -36.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882518998.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.621 kcal (2) G-P(sol) polarization free energy of solvation -28.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds