Wall clock time and date at job start Tue Mar 31 2020 01:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.62987 * 2 1 4 4 C 1.53234 * 109.62584 * 239.61205 * 2 1 3 5 5 N 1.46901 * 109.34178 * 186.26487 * 4 2 1 6 6 C 1.39114 * 110.99958 * 187.25600 * 5 4 2 7 7 N 1.32565 * 120.11325 * 0.02562 * 6 5 4 8 8 C 1.32306 * 119.94088 * 179.69203 * 7 6 5 9 9 C 1.38062 * 120.16598 * 0.56506 * 8 7 6 10 10 N 1.32338 * 120.22184 * 359.43564 * 9 8 7 11 11 C 1.32069 * 120.05594 * 0.27619 * 10 9 8 12 12 F 1.35100 * 120.08296 * 179.97438 * 11 10 9 13 13 C 1.46898 * 111.26640 * 63.10583 * 5 4 2 14 14 C 1.53238 * 109.33968 * 296.89988 * 13 5 4 15 15 H 1.09007 * 109.62870 * 173.54331 * 14 13 5 16 16 C 1.53006 * 109.78842 * 294.01999 * 14 13 5 17 17 N 1.47077 * 109.78607 * 120.48958 * 2 1 3 18 18 C 1.36935 * 120.88759 * 350.96306 * 17 2 1 19 19 H 1.08001 * 119.99684 * 26.18090 * 18 17 2 20 20 C 1.38805 * 120.00431 * 206.18863 * 18 17 2 21 21 N 1.31615 * 120.00114 * 17.47743 * 20 18 17 22 22 Si 1.86803 * 120.00202 * 197.48583 * 20 18 17 23 23 H 1.48492 * 109.47489 * 89.99271 * 22 20 18 24 24 H 1.48493 * 109.47248 * 209.99696 * 22 20 18 25 25 H 1.48507 * 109.46745 * 329.99615 * 22 20 18 26 26 H 1.08998 * 109.47607 * 180.38623 * 1 2 3 27 27 H 1.09011 * 109.46765 * 300.38783 * 1 2 3 28 28 H 1.09001 * 109.46967 * 60.38200 * 1 2 3 29 29 H 1.09003 * 109.49396 * 66.31045 * 4 2 1 30 30 H 1.09004 * 109.49782 * 306.23144 * 4 2 1 31 31 H 1.08005 * 119.91529 * 180.30362 * 8 7 6 32 32 H 1.08007 * 119.88650 * 179.71049 * 9 8 7 33 33 H 1.09008 * 109.49176 * 56.85523 * 13 5 4 34 34 H 1.08993 * 109.49600 * 176.93338 * 13 5 4 35 35 H 1.08995 * 109.47029 * 179.13139 * 16 14 13 36 36 H 1.08997 * 109.46677 * 299.13478 * 16 14 13 37 37 H 1.09004 * 109.46277 * 59.12729 * 16 14 13 38 38 H 0.97003 * 120.00553 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8962 1.0266 0.0000 4 6 2.0447 -0.7301 -1.2450 5 7 3.5059 -0.8583 -1.1646 6 6 4.0274 -1.3692 -2.3488 7 7 3.2201 -1.6675 -3.3570 8 6 3.7203 -2.1475 -4.4839 9 6 5.0804 -2.3496 -4.6086 10 7 5.8924 -2.0542 -3.6062 11 6 5.4030 -1.5693 -2.4794 12 9 6.2314 -1.2679 -1.4556 13 6 3.9062 -1.6806 -0.0151 14 6 3.4677 -0.9895 1.2804 15 1 3.6589 -1.6466 2.1289 16 6 4.2428 0.3177 1.4582 17 7 2.0279 -0.7022 1.1926 18 6 1.1738 -1.0781 2.1948 19 1 0.1318 -1.2595 1.9764 20 6 1.6472 -1.2258 3.4912 21 7 2.7982 -0.6891 3.8367 22 14 0.6508 -2.1866 4.7456 23 1 1.0476 -3.6168 4.7026 24 1 0.9072 -1.6423 6.1033 25 1 -0.7948 -2.0642 4.4281 26 1 -0.3634 -1.0276 0.0069 27 1 -0.3633 0.5199 0.8866 28 1 -0.3633 0.5079 -0.8934 29 1 1.7780 -0.1619 -2.1362 30 1 1.5949 -1.7216 -1.2973 31 1 3.0627 -2.3857 -5.3068 32 1 5.4834 -2.7461 -5.5288 33 1 3.4304 -2.6589 -0.0844 34 1 4.9893 -1.8018 -0.0141 35 1 3.9160 0.8124 2.3728 36 1 5.3092 0.1017 1.5229 37 1 4.0553 0.9700 0.6052 38 1 3.1289 -0.7920 4.7428 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882518998.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:34 Heat of formation + Delta-G solvation = 38.903938 kcal Electronic energy + Delta-G solvation = -23071.311753 eV Core-core repulsion = 19671.475470 eV Total energy + Delta-G solvation = -3399.836284 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.19056 -42.21934 -40.16974 -36.93913 -34.97233 -34.38741 -33.25959 -31.22359 -29.59015 -28.04360 -26.86097 -25.82853 -25.06510 -23.64510 -22.52857 -20.51507 -19.29510 -19.07429 -18.58289 -17.95193 -17.33102 -16.91095 -16.13712 -16.00930 -15.72807 -15.68766 -15.26637 -15.12675 -14.78861 -14.50533 -14.36923 -13.62418 -13.39839 -13.01815 -12.84282 -12.81238 -12.78635 -12.59116 -12.36027 -12.29595 -12.21587 -11.92197 -11.75907 -11.38256 -11.21423 -10.92381 -10.48095 -10.32360 -9.23309 -8.63281 -7.79634 -5.22357 -0.39589 -0.08315 1.48718 1.51260 1.58197 2.06980 2.38095 2.54336 2.65707 3.18587 3.22624 3.34626 3.51633 3.94765 4.02031 4.12664 4.28489 4.30075 4.40436 4.48526 4.51554 4.63745 4.78266 4.82072 4.88118 5.01625 5.10822 5.16718 5.24831 5.39045 5.39817 5.56910 5.70683 5.77576 5.87531 5.99148 6.13208 6.44511 6.59272 7.21337 7.89899 8.43912 9.26340 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.026286 B = 0.005597 C = 0.005095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.938980 B = 5001.142337 C = 5494.270633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.161 3.839 3 H 0.020 0.980 4 C 0.076 3.924 5 N -0.466 5.466 6 C 0.246 3.754 7 N -0.473 5.473 8 C 0.085 3.915 9 C 0.054 3.946 10 N -0.467 5.467 11 C 0.211 3.789 12 F -0.110 7.110 13 C 0.049 3.951 14 C 0.199 3.801 15 H 0.071 0.929 16 C -0.119 4.119 17 N -0.599 5.599 18 C -0.252 4.252 19 H 0.077 0.923 20 C -0.047 4.047 21 N -0.923 5.923 22 Si 0.958 3.042 23 H -0.292 1.292 24 H -0.300 1.300 25 H -0.271 1.271 26 H 0.051 0.949 27 H 0.047 0.953 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.041 0.959 31 H 0.226 0.774 32 H 0.226 0.774 33 H 0.031 0.969 34 H 0.087 0.913 35 H 0.046 0.954 36 H 0.036 0.964 37 H 0.032 0.968 38 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.329 -3.248 -17.752 18.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.054 3.946 3 H 0.038 0.962 4 C -0.052 4.052 5 N -0.182 5.182 6 C 0.010 3.990 7 N -0.193 5.193 8 C -0.077 4.077 9 C -0.106 4.106 10 N -0.187 5.187 11 C 0.051 3.949 12 F -0.090 7.090 13 C -0.078 4.078 14 C 0.092 3.908 15 H 0.089 0.911 16 C -0.178 4.178 17 N -0.322 5.322 18 C -0.382 4.382 19 H 0.094 0.906 20 C -0.243 4.243 21 N -0.569 5.569 22 Si 0.787 3.213 23 H -0.219 1.219 24 H -0.227 1.227 25 H -0.195 1.195 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.095 0.905 29 H 0.111 0.889 30 H 0.059 0.941 31 H 0.242 0.758 32 H 0.243 0.757 33 H 0.049 0.951 34 H 0.105 0.895 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.052 0.948 38 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.550 -2.723 -17.338 17.619 hybrid contribution -0.168 -0.815 1.384 1.615 sum 1.382 -3.539 -15.954 16.400 Atomic orbital electron populations 1.21674 0.93639 1.01572 1.01489 1.20734 0.94435 0.93438 0.85964 0.96185 1.22462 0.83007 1.00289 0.99404 1.58941 1.14331 1.44838 1.00042 1.20844 0.89729 0.94415 0.94015 1.68592 1.37317 1.11848 1.01504 1.24543 0.95980 0.92119 0.95047 1.24253 0.90913 0.97801 0.97668 1.67746 1.41521 1.09903 0.99542 1.18611 0.85413 1.03936 0.86902 1.91555 1.72087 1.90496 1.54843 1.22967 1.00993 0.93541 0.90272 1.20277 0.83256 0.95176 0.92092 0.91133 1.21760 0.97464 0.98713 0.99900 1.44536 1.03421 1.65596 1.18696 1.19491 0.93361 1.38369 0.87018 0.90562 1.25643 0.98815 1.01429 0.98382 1.70158 1.22488 1.46261 1.18040 0.85410 0.78939 0.78385 0.78539 1.21893 1.22660 1.19549 0.93035 0.93347 0.90500 0.88909 0.94089 0.75758 0.75745 0.95067 0.89459 0.93540 0.94510 0.94844 0.94428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.45 7.94 71.98 0.57 -3.88 16 2 C 0.16 6.55 3.25 44.96 0.15 6.69 16 3 H 0.02 0.89 7.63 -2.39 -0.02 0.87 16 4 C 0.08 2.73 4.13 86.38 0.36 3.08 16 5 N -0.47 -17.23 4.11 -700.17 -2.88 -20.11 16 6 C 0.25 7.96 6.41 133.09 0.85 8.82 16 7 N -0.47 -12.61 8.85 -192.42 -1.70 -14.31 16 8 C 0.08 1.40 11.21 84.58 0.95 2.34 16 9 C 0.05 0.89 11.21 84.57 0.95 1.84 16 10 N -0.47 -12.41 10.50 -195.80 -2.06 -14.47 16 11 C 0.21 6.76 8.10 84.99 0.69 7.45 16 12 F -0.11 -3.90 14.80 44.97 0.67 -3.24 16 13 C 0.05 1.99 4.73 86.38 0.41 2.40 16 14 C 0.20 9.44 2.34 44.96 0.11 9.55 16 15 H 0.07 3.83 6.10 -2.38 -0.01 3.81 16 16 C -0.12 -5.57 8.97 71.98 0.65 -4.92 16 17 N -0.60 -29.02 2.73 -650.65 -1.78 -30.80 16 18 C -0.25 -13.24 8.74 84.03 0.73 -12.50 16 19 H 0.08 3.87 6.17 -2.91 -0.02 3.86 16 20 C -0.05 -2.54 4.93 84.86 0.42 -2.12 16 21 N -0.92 -52.52 9.77 21.65 0.21 -52.31 16 22 Si 0.96 44.25 29.59 68.60 2.03 46.28 16 23 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 24 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 25 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 26 H 0.05 1.83 7.56 -2.39 -0.02 1.82 16 27 H 0.05 1.86 7.58 -2.38 -0.02 1.84 16 28 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.09 2.97 7.66 -2.39 -0.02 2.96 16 30 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 31 H 0.23 1.33 8.06 -2.91 -0.02 1.31 16 32 H 0.23 1.30 8.06 -2.91 -0.02 1.27 16 33 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 34 H 0.09 3.41 5.53 -2.39 -0.01 3.40 16 35 H 0.05 2.45 6.89 -2.39 -0.02 2.43 16 36 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.03 1.50 7.10 -2.39 -0.02 1.48 16 38 H 0.25 13.80 8.31 -92.71 -0.77 13.03 16 Total: -1.00 -65.47 302.85 2.39 -63.09 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: 1.07 Total: 7.14 kcal Atomic # 6 Polarization: 11.92 SS G_CDS: 6.82 Total: 18.74 kcal Atomic # 7 Polarization: -123.80 SS G_CDS: -8.21 Total: -132.01 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.67 Total: -3.24 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -65.47 2.39 -63.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882518998.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.991 kcal (2) G-P(sol) polarization free energy of solvation -65.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds