Wall clock time and date at job start Tue Mar 31 2020 01:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.62722 * 2 1 4 4 C 1.53236 * 109.63127 * 239.40956 * 2 1 3 5 5 N 1.46900 * 109.33980 * 186.45589 * 4 2 1 6 6 C 1.39155 * 111.00195 * 187.25479 * 5 4 2 7 7 C 1.39206 * 120.06197 * 180.02562 * 6 5 4 8 8 N 1.32013 * 119.92881 * 180.02562 * 7 6 5 9 9 C 1.32397 * 120.05894 * 359.97438 * 8 7 6 10 10 F 1.35098 * 119.93881 * 180.02562 * 9 8 7 11 11 C 1.38472 * 120.12089 * 359.97438 * 9 8 7 12 12 N 1.32213 * 120.06800 * 359.72951 * 11 9 8 13 13 C 1.46906 * 111.26583 * 63.10729 * 5 4 2 14 14 C 1.53695 * 109.25637 * 296.75521 * 13 5 4 15 15 H 1.08998 * 109.79545 * 294.41976 * 14 13 5 16 16 C 1.53007 * 109.69801 * 173.68718 * 14 13 5 17 17 N 1.47078 * 108.27730 * 54.08198 * 14 13 5 18 18 C 1.36939 * 120.88149 * 128.75077 * 17 14 13 19 19 H 1.07998 * 120.00006 * 305.88109 * 18 17 14 20 20 C 1.38813 * 119.99748 * 125.87639 * 18 17 14 21 21 N 1.31619 * 120.00092 * 343.45086 * 20 18 17 22 22 Si 1.86802 * 119.99814 * 163.45197 * 20 18 17 23 23 H 1.48496 * 109.46983 * 180.02562 * 22 20 18 24 24 H 1.48502 * 109.47031 * 300.00101 * 22 20 18 25 25 H 1.48496 * 109.47186 * 60.00074 * 22 20 18 26 26 H 1.08992 * 109.47383 * 299.61798 * 1 2 3 27 27 H 1.08998 * 109.47157 * 59.61942 * 1 2 3 28 28 H 1.09007 * 109.46821 * 179.61754 * 1 2 3 29 29 H 1.09000 * 109.49561 * 306.42196 * 4 2 1 30 30 H 1.09003 * 109.49466 * 66.50459 * 4 2 1 31 31 H 1.07998 * 120.03783 * 359.97438 * 7 6 5 32 32 H 1.08001 * 119.96423 * 179.97438 * 11 9 8 33 33 H 1.09000 * 109.49056 * 56.85523 * 13 5 4 34 34 H 1.08999 * 109.49169 * 176.90754 * 13 5 4 35 35 H 1.08994 * 109.46971 * 300.49929 * 16 14 13 36 36 H 1.09000 * 109.47020 * 60.50809 * 16 14 13 37 37 H 1.09002 * 109.46676 * 180.49920 * 16 14 13 38 38 H 0.96997 * 119.99839 * 175.41010 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8962 1.0267 0.0000 4 6 2.0448 -0.7345 -1.2424 5 7 3.5055 -0.8663 -1.1592 6 6 4.0279 -1.3817 -2.3416 7 6 5.3993 -1.5850 -2.4678 8 7 5.8921 -2.0735 -3.5908 9 6 5.0833 -2.3704 -4.5961 10 9 5.5902 -2.8708 -5.7441 11 6 3.7187 -2.1701 -4.4726 12 7 3.2193 -1.6866 -3.3480 13 6 3.9017 -1.6870 -0.0069 14 6 3.4638 -0.9861 1.2889 15 1 4.0151 -0.0534 1.4086 16 6 3.7293 -1.9019 2.4856 17 7 2.0241 -0.7006 1.1951 18 6 1.1671 -1.0722 2.1965 19 1 1.1392 -2.0990 2.5300 20 6 0.3344 -0.1291 2.7830 21 7 0.5800 1.1544 2.6254 22 14 -1.1347 -0.6814 3.7959 23 1 -1.8585 0.5096 4.3085 24 1 -2.0477 -1.4868 2.9454 25 1 -0.6663 -1.5063 4.9384 26 1 -0.3634 0.5078 0.8933 27 1 -0.3633 0.5197 -0.8865 28 1 -0.3633 -1.0277 -0.0069 29 1 1.5925 -1.7249 -1.2930 30 1 1.7812 -0.1677 -2.1354 31 1 6.0594 -1.3425 -1.6482 32 1 3.0613 -2.4128 -5.2944 33 1 3.4234 -2.6641 -0.0748 34 1 4.9845 -1.8114 -0.0041 35 1 3.1726 -2.8308 2.3628 36 1 4.7952 -2.1221 2.5452 37 1 3.4094 -1.4048 3.4014 38 1 -0.0381 1.8133 2.9785 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882519105.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:40 Heat of formation + Delta-G solvation = 53.222771 kcal Electronic energy + Delta-G solvation = -22517.423644 eV Core-core repulsion = 19118.208271 eV Total energy + Delta-G solvation = -3399.215373 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.08034 -41.24934 -38.53826 -35.42185 -34.18069 -32.85292 -31.70406 -29.79157 -27.67007 -26.58183 -25.60116 -24.53505 -23.85990 -21.90355 -20.43422 -19.32780 -18.18554 -18.09870 -17.05310 -16.39694 -16.18119 -15.25504 -14.82335 -14.80010 -14.42201 -14.34266 -13.87066 -13.79718 -13.57919 -13.07367 -12.91869 -12.19513 -11.75197 -11.69242 -11.49239 -11.36412 -11.21499 -10.90428 -10.85112 -10.63345 -10.50098 -10.32002 -10.08894 -9.91274 -9.79009 -9.60253 -9.27956 -8.15903 -8.01111 -6.45498 -5.79712 -3.65054 0.59805 0.93366 3.26187 3.29316 3.36039 3.38116 3.39130 3.63775 4.14480 4.31179 4.37288 4.85512 4.94193 5.11912 5.21547 5.32135 5.53536 5.63358 5.84305 5.87750 6.08117 6.12382 6.25715 6.27422 6.31672 6.45741 6.59766 6.73941 6.80035 6.89220 7.00500 7.06682 7.16657 7.30170 7.46921 7.63256 7.67245 7.82294 8.53856 9.12020 9.63983 10.42383 11.10895 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.034909 B = 0.004519 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.898976 B = 6194.740855 C = 6628.187906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.195 3.805 3 H 0.039 0.961 4 C 0.052 3.948 5 N -0.459 5.459 6 C 0.271 3.729 7 C 0.071 3.929 8 N -0.448 5.448 9 C 0.201 3.799 10 F -0.111 7.111 11 C 0.075 3.925 12 N -0.456 5.456 13 C 0.048 3.952 14 C 0.171 3.829 15 H 0.039 0.961 16 C -0.130 4.130 17 N -0.579 5.579 18 C -0.264 4.264 19 H 0.053 0.947 20 C 0.037 3.963 21 N -0.874 5.874 22 Si 0.885 3.115 23 H -0.289 1.289 24 H -0.279 1.279 25 H -0.278 1.278 26 H 0.097 0.903 27 H 0.024 0.976 28 H 0.042 0.958 29 H 0.047 0.953 30 H 0.074 0.926 31 H 0.181 0.819 32 H 0.177 0.823 33 H 0.047 0.953 34 H 0.072 0.928 35 H 0.050 0.950 36 H 0.038 0.962 37 H 0.069 0.931 38 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.916 -5.092 -9.126 12.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.089 3.911 3 H 0.057 0.943 4 C -0.076 4.076 5 N -0.174 5.174 6 C 0.035 3.965 7 C -0.096 4.096 8 N -0.167 5.167 9 C 0.045 3.955 10 F -0.091 7.091 11 C -0.089 4.089 12 N -0.175 5.175 13 C -0.079 4.079 14 C 0.064 3.936 15 H 0.056 0.944 16 C -0.188 4.188 17 N -0.303 5.303 18 C -0.394 4.394 19 H 0.070 0.930 20 C -0.165 4.165 21 N -0.513 5.513 22 Si 0.713 3.287 23 H -0.215 1.215 24 H -0.205 1.205 25 H -0.204 1.204 26 H 0.115 0.885 27 H 0.043 0.957 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.197 0.803 32 H 0.194 0.806 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.088 0.912 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.017 -4.463 -8.890 11.626 hybrid contribution -0.922 -0.822 -0.057 1.237 sum 5.095 -5.285 -8.947 11.573 Atomic orbital electron populations 1.22016 0.95177 1.01012 1.02001 1.20394 0.93462 0.93861 0.83399 0.94344 1.22928 0.82287 1.01189 1.01236 1.59062 1.15155 1.43616 0.99550 1.21318 0.91722 0.90469 0.92958 1.23107 0.93094 0.98372 0.95024 1.67649 1.39406 1.09715 0.99904 1.18930 0.90172 1.01947 0.84476 1.91609 1.88380 1.84651 1.44414 1.23415 0.92096 0.96534 0.96812 1.68579 1.37525 1.10996 1.00418 1.23166 0.99591 0.94719 0.90408 1.20681 0.87914 0.95309 0.89658 0.94354 1.21684 0.98253 0.99615 0.99212 1.44077 1.00350 1.68297 1.17607 1.18625 1.16688 0.91788 1.12312 0.92976 1.25555 1.00104 0.95178 0.95713 1.70121 1.34929 0.99650 1.46648 0.86698 0.83386 0.77957 0.80675 1.21453 1.20453 1.20380 0.88454 0.95674 0.93872 0.93422 0.90806 0.80251 0.80565 0.93501 0.90943 0.93069 0.94330 0.91166 0.93381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.11 37.16 0.30 -2.84 16 2 C 0.20 4.27 3.12 -67.49 -0.21 4.06 16 3 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 4 C 0.05 0.97 4.12 -3.70 -0.02 0.95 16 5 N -0.46 -7.83 4.66 -172.47 -0.80 -8.64 16 6 C 0.27 4.18 6.40 -154.63 -0.99 3.19 16 7 C 0.07 0.97 10.32 -17.11 -0.18 0.79 16 8 N -0.45 -6.41 10.50 -13.24 -0.14 -6.55 16 9 C 0.20 2.67 8.43 -17.22 -0.15 2.52 16 10 F -0.11 -1.41 17.29 2.25 0.04 -1.37 16 11 C 0.07 0.93 11.20 -17.30 -0.19 0.74 16 12 N -0.46 -6.90 8.85 -12.16 -0.11 -7.01 16 13 C 0.05 0.79 4.74 -3.46 -0.02 0.77 16 14 C 0.17 3.34 3.68 -67.25 -0.25 3.09 16 15 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 16 C -0.13 -2.30 8.20 37.16 0.30 -2.00 16 17 N -0.58 -13.25 2.80 -156.73 -0.44 -13.69 16 18 C -0.26 -6.57 6.91 -15.06 -0.10 -6.67 16 19 H 0.05 1.32 7.18 -52.49 -0.38 0.94 16 20 C 0.04 0.93 3.34 -17.43 -0.06 0.87 16 21 N -0.87 -23.49 11.74 55.49 0.65 -22.84 16 22 Si 0.88 20.04 29.59 -169.99 -5.03 15.01 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 H 0.10 2.38 4.43 -51.93 -0.23 2.15 16 27 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.04 0.93 8.00 -51.93 -0.42 0.52 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.07 1.35 7.67 -51.93 -0.40 0.95 16 31 H 0.18 2.03 7.14 -52.49 -0.37 1.66 16 32 H 0.18 1.58 8.06 -52.49 -0.42 1.15 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.97 6.65 -51.93 -0.35 0.63 16 35 H 0.05 0.91 7.59 -51.93 -0.39 0.52 16 36 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 1.39 7.68 -51.93 -0.40 1.00 16 38 H 0.26 6.71 8.32 -40.82 -0.34 6.37 16 LS Contribution 306.89 15.07 4.62 4.62 Total: -1.00 -27.30 306.89 -7.78 -35.09 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -5.03 Total: -0.12 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: -1.55 Total: 5.49 kcal Atomic # 7 Polarization: -57.88 SS G_CDS: -0.84 Total: -58.72 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.04 Total: -1.37 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.03 Total: 15.01 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -27.30 -7.78 -35.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882519105.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.310 kcal (2) G-P(sol) polarization free energy of solvation -27.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds