Wall clock time and date at job start Tue Mar 31 2020 01:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.62722 * 2 1 4 4 C 1.53236 * 109.63127 * 239.40956 * 2 1 3 5 5 N 1.46900 * 109.33980 * 186.45589 * 4 2 1 6 6 C 1.39155 * 111.00195 * 187.25479 * 5 4 2 7 7 C 1.39206 * 120.06197 * 180.02562 * 6 5 4 8 8 N 1.32013 * 119.92881 * 180.02562 * 7 6 5 9 9 C 1.32397 * 120.05894 * 359.97438 * 8 7 6 10 10 F 1.35098 * 119.93881 * 180.02562 * 9 8 7 11 11 C 1.38472 * 120.12089 * 359.97438 * 9 8 7 12 12 N 1.32213 * 120.06800 * 359.72951 * 11 9 8 13 13 C 1.46906 * 111.26583 * 63.10729 * 5 4 2 14 14 C 1.53695 * 109.25637 * 296.75521 * 13 5 4 15 15 H 1.08998 * 109.79545 * 294.41976 * 14 13 5 16 16 C 1.53007 * 109.69801 * 173.68718 * 14 13 5 17 17 N 1.47078 * 108.27730 * 54.08198 * 14 13 5 18 18 C 1.36939 * 120.88149 * 128.75077 * 17 14 13 19 19 H 1.07998 * 120.00006 * 305.88109 * 18 17 14 20 20 C 1.38813 * 119.99748 * 125.87639 * 18 17 14 21 21 N 1.31619 * 120.00092 * 343.45086 * 20 18 17 22 22 Si 1.86802 * 119.99814 * 163.45197 * 20 18 17 23 23 H 1.48496 * 109.46983 * 180.02562 * 22 20 18 24 24 H 1.48502 * 109.47031 * 300.00101 * 22 20 18 25 25 H 1.48496 * 109.47186 * 60.00074 * 22 20 18 26 26 H 1.08992 * 109.47383 * 299.61798 * 1 2 3 27 27 H 1.08998 * 109.47157 * 59.61942 * 1 2 3 28 28 H 1.09007 * 109.46821 * 179.61754 * 1 2 3 29 29 H 1.09000 * 109.49561 * 306.42196 * 4 2 1 30 30 H 1.09003 * 109.49466 * 66.50459 * 4 2 1 31 31 H 1.07998 * 120.03783 * 359.97438 * 7 6 5 32 32 H 1.08001 * 119.96423 * 179.97438 * 11 9 8 33 33 H 1.09000 * 109.49056 * 56.85523 * 13 5 4 34 34 H 1.08999 * 109.49169 * 176.90754 * 13 5 4 35 35 H 1.08994 * 109.46971 * 300.49929 * 16 14 13 36 36 H 1.09000 * 109.47020 * 60.50809 * 16 14 13 37 37 H 1.09002 * 109.46676 * 180.49920 * 16 14 13 38 38 H 0.96997 * 119.99839 * 175.41010 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8962 1.0267 0.0000 4 6 2.0448 -0.7345 -1.2424 5 7 3.5055 -0.8663 -1.1592 6 6 4.0279 -1.3817 -2.3416 7 6 5.3993 -1.5850 -2.4678 8 7 5.8921 -2.0735 -3.5908 9 6 5.0833 -2.3704 -4.5961 10 9 5.5902 -2.8708 -5.7441 11 6 3.7187 -2.1701 -4.4726 12 7 3.2193 -1.6866 -3.3480 13 6 3.9017 -1.6870 -0.0069 14 6 3.4638 -0.9861 1.2889 15 1 4.0151 -0.0534 1.4086 16 6 3.7293 -1.9019 2.4856 17 7 2.0241 -0.7006 1.1951 18 6 1.1671 -1.0722 2.1965 19 1 1.1392 -2.0990 2.5300 20 6 0.3344 -0.1291 2.7830 21 7 0.5800 1.1544 2.6254 22 14 -1.1347 -0.6814 3.7959 23 1 -1.8585 0.5096 4.3085 24 1 -2.0477 -1.4868 2.9454 25 1 -0.6663 -1.5063 4.9384 26 1 -0.3634 0.5078 0.8933 27 1 -0.3633 0.5197 -0.8865 28 1 -0.3633 -1.0277 -0.0069 29 1 1.5925 -1.7249 -1.2930 30 1 1.7812 -0.1677 -2.1354 31 1 6.0594 -1.3425 -1.6482 32 1 3.0613 -2.4128 -5.2944 33 1 3.4234 -2.6641 -0.0748 34 1 4.9845 -1.8114 -0.0041 35 1 3.1726 -2.8308 2.3628 36 1 4.7952 -2.1221 2.5452 37 1 3.4094 -1.4048 3.4014 38 1 -0.0381 1.8133 2.9785 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882519105.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:39 Heat of formation + Delta-G solvation = 36.184415 kcal Electronic energy + Delta-G solvation = -22518.162483 eV Core-core repulsion = 19118.208271 eV Total energy + Delta-G solvation = -3399.954211 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.09963 -42.37720 -39.98229 -36.92783 -35.37095 -34.39477 -33.45489 -31.07540 -29.34108 -27.95618 -27.14981 -25.75849 -25.34039 -23.25534 -22.00852 -21.00248 -19.33443 -19.13856 -18.31331 -17.98766 -17.39074 -16.87408 -16.18150 -16.14783 -16.02370 -15.50664 -15.34335 -15.08995 -14.78614 -14.57536 -14.35866 -13.72229 -13.34903 -13.22660 -12.91837 -12.80232 -12.61423 -12.49010 -12.41470 -12.32108 -12.19119 -12.05090 -11.67175 -11.58072 -11.34767 -11.01476 -10.38709 -10.06524 -9.22827 -8.35586 -7.68022 -5.60311 -0.45255 -0.14179 1.47491 1.51010 1.55453 2.14923 2.33458 2.49912 2.51623 3.09869 3.22985 3.27881 3.54295 3.74477 3.95067 4.12441 4.21000 4.32806 4.42661 4.50133 4.56374 4.68193 4.79044 4.81699 4.91796 4.96324 5.01024 5.13385 5.23809 5.40146 5.48696 5.67451 5.69811 5.74391 5.81013 5.96852 6.13668 6.52933 6.60115 7.26032 7.80714 8.54849 9.16557 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.034909 B = 0.004519 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.898976 B = 6194.740855 C = 6628.187906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.195 3.805 3 H 0.006 0.994 4 C 0.073 3.927 5 N -0.468 5.468 6 C 0.256 3.744 7 C 0.079 3.921 8 N -0.463 5.463 9 C 0.204 3.796 10 F -0.106 7.106 11 C 0.083 3.917 12 N -0.474 5.474 13 C 0.059 3.941 14 C 0.163 3.837 15 H 0.021 0.979 16 C -0.120 4.120 17 N -0.595 5.595 18 C -0.261 4.261 19 H 0.048 0.952 20 C 0.000 4.000 21 N -0.906 5.906 22 Si 0.935 3.065 23 H -0.295 1.295 24 H -0.276 1.276 25 H -0.274 1.274 26 H 0.071 0.929 27 H 0.045 0.955 28 H 0.039 0.961 29 H 0.039 0.961 30 H 0.078 0.922 31 H 0.203 0.797 32 H 0.212 0.788 33 H 0.041 0.959 34 H 0.110 0.890 35 H 0.047 0.953 36 H 0.077 0.923 37 H 0.041 0.959 38 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.928 -6.520 -10.464 14.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.089 3.911 3 H 0.024 0.976 4 C -0.055 4.055 5 N -0.184 5.184 6 C 0.021 3.979 7 C -0.087 4.087 8 N -0.182 5.182 9 C 0.048 3.952 10 F -0.086 7.086 11 C -0.080 4.080 12 N -0.194 5.194 13 C -0.067 4.067 14 C 0.057 3.943 15 H 0.039 0.961 16 C -0.178 4.178 17 N -0.320 5.320 18 C -0.392 4.392 19 H 0.065 0.935 20 C -0.200 4.200 21 N -0.548 5.548 22 Si 0.763 3.237 23 H -0.221 1.221 24 H -0.201 1.201 25 H -0.200 1.200 26 H 0.090 0.910 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.096 0.904 31 H 0.220 0.780 32 H 0.229 0.771 33 H 0.059 0.941 34 H 0.128 0.872 35 H 0.066 0.934 36 H 0.096 0.904 37 H 0.060 0.940 38 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 7.053 -5.916 -10.238 13.768 hybrid contribution -1.158 -0.418 0.241 1.254 sum 5.895 -6.334 -9.997 13.222 Atomic orbital electron populations 1.21900 0.95424 1.00546 1.01746 1.20280 0.93425 0.92622 0.84793 0.97591 1.22488 0.83737 0.99997 0.99306 1.59020 1.13844 1.44882 1.00634 1.21259 0.92435 0.91774 0.92408 1.23333 0.92500 0.97432 0.95390 1.67697 1.39856 1.10273 1.00344 1.19105 0.90545 1.01198 0.84337 1.91627 1.88362 1.84465 1.44122 1.23879 0.92264 0.95100 0.96726 1.68543 1.38247 1.11447 1.01149 1.22998 1.01626 0.93545 0.88542 1.20835 0.85787 0.95339 0.92339 0.96128 1.21579 1.00688 0.98488 0.97002 1.44328 1.01782 1.68260 1.17630 1.18745 1.16815 0.91474 1.12125 0.93467 1.26041 1.02073 0.95089 0.96755 1.70226 1.35703 1.00489 1.48370 0.85892 0.81025 0.77238 0.79563 1.22070 1.20129 1.19994 0.91014 0.93599 0.94229 0.94292 0.90391 0.78042 0.77116 0.94077 0.87233 0.93382 0.90435 0.93993 0.93967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.10 8.11 71.98 0.58 -5.51 16 2 C 0.20 8.66 3.12 44.96 0.14 8.80 16 3 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 4 C 0.07 2.70 4.12 86.38 0.36 3.05 16 5 N -0.47 -15.31 4.66 -699.57 -3.26 -18.56 16 6 C 0.26 7.32 6.40 132.95 0.85 8.17 16 7 C 0.08 1.93 10.32 84.90 0.88 2.80 16 8 N -0.46 -11.92 10.50 -195.82 -2.06 -13.98 16 9 C 0.20 4.83 8.43 84.66 0.71 5.54 16 10 F -0.11 -2.38 17.29 44.97 0.78 -1.61 16 11 C 0.08 1.82 11.20 84.69 0.95 2.77 16 12 N -0.47 -13.23 8.85 -192.40 -1.70 -14.93 16 13 C 0.06 1.83 4.74 86.54 0.41 2.24 16 14 C 0.16 6.29 3.68 45.12 0.17 6.45 16 15 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 16 C -0.12 -4.12 8.20 71.98 0.59 -3.53 16 17 N -0.59 -27.54 2.80 -649.79 -1.82 -29.36 16 18 C -0.26 -13.14 6.91 84.03 0.58 -12.56 16 19 H 0.05 2.41 7.18 -2.91 -0.02 2.39 16 20 C 0.00 -0.02 3.34 84.86 0.28 0.26 16 21 N -0.91 -50.17 11.74 21.65 0.25 -49.91 16 22 Si 0.94 41.75 29.59 68.60 2.03 43.78 16 23 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 24 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 25 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 26 H 0.07 3.59 4.43 -2.39 -0.01 3.58 16 27 H 0.05 1.76 8.14 -2.39 -0.02 1.75 16 28 H 0.04 1.72 8.00 -2.38 -0.02 1.70 16 29 H 0.04 1.49 8.14 -2.39 -0.02 1.48 16 30 H 0.08 2.78 7.67 -2.39 -0.02 2.76 16 31 H 0.20 3.85 7.14 -2.91 -0.02 3.83 16 32 H 0.21 2.95 8.06 -2.91 -0.02 2.93 16 33 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.11 2.55 6.65 -2.39 -0.02 2.54 16 35 H 0.05 1.66 7.59 -2.39 -0.02 1.64 16 36 H 0.08 2.03 8.14 -2.39 -0.02 2.02 16 37 H 0.04 1.66 7.68 -2.39 -0.02 1.64 16 38 H 0.25 13.60 8.32 -92.71 -0.77 12.82 16 Total: -1.00 -59.58 306.89 1.79 -57.79 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: 1.07 Total: 8.30 kcal Atomic # 6 Polarization: 11.98 SS G_CDS: 6.50 Total: 18.48 kcal Atomic # 7 Polarization: -118.17 SS G_CDS: -8.58 Total: -126.75 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.78 Total: -1.61 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Total: -59.58 1.79 -57.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882519105.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.975 kcal (2) G-P(sol) polarization free energy of solvation -59.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds