Wall clock time and date at job start Tue Mar 31 2020 01:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09010 * 109.62426 * 2 1 4 4 C 1.53235 * 109.62948 * 120.38413 * 2 1 3 5 5 N 1.46893 * 109.34162 * 66.07701 * 4 2 1 6 6 C 1.39162 * 111.00220 * 187.25187 * 5 4 2 7 7 C 1.39203 * 120.06029 * 179.97438 * 6 5 4 8 8 N 1.32012 * 119.93045 * 179.97438 * 7 6 5 9 9 C 1.32399 * 120.05339 * 359.97438 * 8 7 6 10 10 F 1.35103 * 119.93442 * 180.02562 * 9 8 7 11 11 C 1.38465 * 120.12645 * 359.97438 * 9 8 7 12 12 N 1.32219 * 120.06656 * 359.78466 * 11 9 8 13 13 C 1.46901 * 111.27021 * 63.10393 * 5 4 2 14 14 C 1.53242 * 109.33831 * 296.89779 * 13 5 4 15 15 H 1.09007 * 109.62517 * 294.11966 * 14 13 5 16 16 C 1.52996 * 109.78902 * 173.63416 * 14 13 5 17 17 N 1.47075 * 108.52125 * 53.82891 * 14 13 5 18 18 C 1.36936 * 120.88323 * 128.79407 * 17 14 13 19 19 H 1.08001 * 120.00045 * 231.71261 * 18 17 14 20 20 C 1.38814 * 119.99866 * 51.71170 * 18 17 14 21 21 N 1.31619 * 119.99822 * 205.82521 * 20 18 17 22 22 Si 1.86798 * 120.00079 * 25.82015 * 20 18 17 23 23 H 1.48499 * 109.47150 * 94.76437 * 22 20 18 24 24 H 1.48500 * 109.47127 * 214.76661 * 22 20 18 25 25 H 1.48499 * 109.47173 * 334.76635 * 22 20 18 26 26 H 1.09002 * 109.46852 * 299.61317 * 1 2 3 27 27 H 1.08998 * 109.47130 * 59.61464 * 1 2 3 28 28 H 1.09002 * 109.47189 * 179.61566 * 1 2 3 29 29 H 1.09001 * 109.49332 * 306.11423 * 4 2 1 30 30 H 1.09002 * 109.49496 * 186.03537 * 4 2 1 31 31 H 1.08001 * 120.03600 * 359.95501 * 7 6 5 32 32 H 1.07995 * 119.96894 * 180.02562 * 11 9 8 33 33 H 1.08996 * 109.49106 * 56.85650 * 13 5 4 34 34 H 1.09003 * 109.49199 * 176.94019 * 13 5 4 35 35 H 1.08996 * 109.47047 * 293.07378 * 16 14 13 36 36 H 1.08999 * 109.47391 * 53.07151 * 16 14 13 37 37 H 1.08995 * 109.46940 * 173.07235 * 16 14 13 38 38 H 0.97006 * 119.99896 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0268 0.0000 4 6 2.0448 -0.7300 1.2451 5 7 1.6788 -2.1502 1.1624 6 6 1.9849 -2.8139 2.3467 7 6 1.7145 -4.1734 2.4740 8 7 2.0064 -4.8006 3.5984 9 6 2.5562 -4.1376 4.6040 10 9 2.8544 -4.7819 5.7534 11 6 2.8271 -2.7854 4.4794 12 7 2.5411 -2.1535 3.3537 13 6 2.3225 -2.8004 0.0131 14 6 1.8191 -2.1552 -1.2825 15 1 0.7568 -2.3654 -1.4075 16 6 2.5974 -2.7135 -2.4756 17 7 2.0280 -0.7021 -1.1926 18 6 2.6694 -0.0210 -2.1925 19 1 3.4990 0.6291 -1.9570 20 6 2.2533 -0.1663 -3.5088 21 7 3.1028 0.0359 -4.4936 22 14 0.4879 -0.6489 -3.8825 23 1 -0.3177 0.5738 -4.1300 24 1 0.4561 -1.5151 -5.0883 25 1 -0.0783 -1.3890 -2.7263 26 1 -0.3633 0.5078 0.8935 27 1 -0.3633 0.5198 -0.8865 28 1 -0.3634 -1.0277 -0.0069 29 1 1.5965 -0.2901 2.1360 30 1 3.1294 -0.6365 1.2991 31 1 1.2662 -4.7146 1.6540 32 1 3.2759 -2.2472 5.3011 33 1 3.4033 -2.6780 0.0844 34 1 2.0756 -3.8621 0.0106 35 1 3.6364 -2.3896 -2.4152 36 1 2.5548 -3.8025 -2.4597 37 1 2.1554 -2.3460 -3.4016 38 1 2.8122 -0.0659 -5.4135 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882519107.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:45 Heat of formation + Delta-G solvation = 57.163267 kcal Electronic energy + Delta-G solvation = -22702.353769 eV Core-core repulsion = 19303.309269 eV Total energy + Delta-G solvation = -3399.044500 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.14116 -41.35131 -38.83200 -35.53110 -34.18709 -32.97102 -31.82889 -30.04064 -28.23969 -26.77341 -25.56184 -24.71242 -23.60064 -22.24358 -21.20248 -18.84385 -18.20506 -18.07104 -17.43785 -16.65997 -16.36012 -15.38148 -15.07043 -14.78720 -14.61848 -14.23342 -14.06271 -13.68934 -13.65876 -13.17974 -12.98754 -12.35699 -12.29910 -11.84208 -11.75554 -11.53117 -11.38148 -11.27543 -10.87540 -10.77811 -10.62031 -10.16289 -10.11425 -9.96697 -9.82143 -9.53803 -9.36016 -8.40887 -8.11114 -6.62777 -6.13983 -3.65775 0.52162 0.85588 3.17347 3.31036 3.31511 3.43340 3.49205 3.54865 4.06268 4.22447 4.44574 4.76786 4.79358 4.86682 5.12571 5.24795 5.40048 5.51248 5.63012 5.80422 5.88888 5.90508 6.05018 6.16535 6.18547 6.28248 6.38178 6.43481 6.56953 6.68180 6.74544 6.86985 6.99332 7.03442 7.20270 7.28855 7.54798 7.99341 8.42610 8.92598 9.59364 10.14573 10.99642 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.034772 B = 0.004823 C = 0.004663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.055915 B = 5803.969767 C = 6003.689286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.162 3.838 3 H 0.079 0.921 4 C 0.058 3.942 5 N -0.458 5.458 6 C 0.270 3.730 7 C 0.073 3.927 8 N -0.448 5.448 9 C 0.204 3.796 10 F -0.110 7.110 11 C 0.074 3.926 12 N -0.455 5.455 13 C 0.048 3.952 14 C 0.167 3.833 15 H 0.045 0.955 16 C -0.135 4.135 17 N -0.592 5.592 18 C -0.283 4.283 19 H 0.070 0.930 20 C 0.064 3.936 21 N -0.886 5.886 22 Si 0.856 3.144 23 H -0.292 1.292 24 H -0.297 1.297 25 H -0.252 1.252 26 H 0.040 0.960 27 H 0.048 0.952 28 H 0.053 0.947 29 H 0.079 0.921 30 H 0.052 0.948 31 H 0.180 0.820 32 H 0.178 0.822 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.036 0.964 37 H 0.064 0.936 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.282 -6.355 13.451 15.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.056 3.944 3 H 0.097 0.903 4 C -0.070 4.070 5 N -0.174 5.174 6 C 0.035 3.965 7 C -0.094 4.094 8 N -0.166 5.166 9 C 0.048 3.952 10 F -0.090 7.090 11 C -0.089 4.089 12 N -0.175 5.175 13 C -0.079 4.079 14 C 0.061 3.939 15 H 0.063 0.937 16 C -0.193 4.193 17 N -0.317 5.317 18 C -0.411 4.411 19 H 0.087 0.913 20 C -0.140 4.140 21 N -0.524 5.524 22 Si 0.684 3.316 23 H -0.219 1.219 24 H -0.224 1.224 25 H -0.176 1.176 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.097 0.903 30 H 0.070 0.930 31 H 0.197 0.803 32 H 0.195 0.805 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.055 0.945 37 H 0.082 0.918 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.688 -6.327 13.140 14.830 hybrid contribution -0.375 -0.338 0.040 0.507 sum -3.063 -6.664 13.180 15.083 Atomic orbital electron populations 1.22176 0.98145 1.01376 0.99892 1.20892 0.92147 0.95623 0.85785 0.90257 1.22643 0.99725 0.84381 1.00227 1.59050 1.53169 1.05475 0.99676 1.21246 0.90985 0.91505 0.92797 1.23110 0.99821 0.91474 0.94994 1.67665 1.09612 1.39475 0.99889 1.18942 1.02351 0.89526 0.84411 1.91617 1.90653 1.82442 1.44251 1.23410 0.98083 0.90576 0.96799 1.68559 1.10493 1.38016 1.00383 1.23070 0.97251 0.97552 0.90013 1.20914 0.97337 0.85042 0.90651 0.93705 1.21856 1.02357 0.97031 0.98044 1.44423 1.66669 1.00749 1.19813 1.18452 1.10886 1.26797 0.84954 0.91285 1.25817 0.96657 0.95568 0.95955 1.69948 1.33904 1.49009 0.99503 0.87310 0.88144 0.78238 0.77914 1.21915 1.22362 1.17619 0.94103 0.93252 0.92753 0.90283 0.93004 0.80262 0.80489 0.92920 0.90745 0.90932 0.94457 0.91779 0.92576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 9.22 37.16 0.34 -2.41 16 2 C 0.16 3.03 3.31 -67.49 -0.22 2.80 16 3 H 0.08 1.51 7.95 -51.92 -0.41 1.10 16 4 C 0.06 0.95 4.22 -3.71 -0.02 0.93 16 5 N -0.46 -7.10 4.17 -172.76 -0.72 -7.83 16 6 C 0.27 3.85 6.40 -154.62 -0.99 2.86 16 7 C 0.07 0.94 10.32 -17.12 -0.18 0.76 16 8 N -0.45 -6.12 10.50 -13.24 -0.14 -6.26 16 9 C 0.20 2.56 8.43 -17.22 -0.15 2.42 16 10 F -0.11 -1.33 17.29 2.25 0.04 -1.29 16 11 C 0.07 0.86 11.20 -17.30 -0.19 0.66 16 12 N -0.45 -6.31 8.85 -12.17 -0.11 -6.42 16 13 C 0.05 0.76 4.72 -3.70 -0.02 0.74 16 14 C 0.17 3.22 2.05 -67.49 -0.14 3.08 16 15 H 0.05 0.91 5.98 -51.93 -0.31 0.60 16 16 C -0.14 -2.68 7.84 37.16 0.29 -2.39 16 17 N -0.59 -12.76 1.98 -157.01 -0.31 -13.07 16 18 C -0.28 -7.24 8.71 -15.06 -0.13 -7.37 16 19 H 0.07 1.97 8.06 -52.49 -0.42 1.54 16 20 C 0.06 1.68 3.76 -17.43 -0.07 1.61 16 21 N -0.89 -25.05 13.97 55.49 0.78 -24.28 16 22 Si 0.86 20.54 25.42 -169.99 -4.32 16.22 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.30 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.25 -5.73 5.18 56.52 0.29 -5.44 16 26 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.05 0.97 7.09 -51.93 -0.37 0.60 16 29 H 0.08 1.22 7.67 -51.93 -0.40 0.82 16 30 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.18 1.92 7.15 -52.49 -0.38 1.55 16 32 H 0.18 1.43 8.06 -52.49 -0.42 1.00 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 0.98 6.65 -51.93 -0.35 0.63 16 35 H 0.07 1.57 7.68 -51.93 -0.40 1.17 16 36 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 1.43 3.78 -51.93 -0.20 1.24 16 38 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 300.83 15.07 4.53 4.53 Total: -1.00 -28.15 300.83 -6.72 -34.87 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -5.01 Total: -0.18 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: -1.46 Total: 3.70 kcal Atomic # 7 Polarization: -57.35 SS G_CDS: -0.50 Total: -57.85 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.32 Total: 16.22 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.15 -6.72 -34.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882519107.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.034 kcal (2) G-P(sol) polarization free energy of solvation -28.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds