Wall clock time and date at job start Tue Mar 31 2020 01:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09010 * 109.62426 * 2 1 4 4 C 1.53235 * 109.62948 * 120.38413 * 2 1 3 5 5 N 1.46893 * 109.34162 * 66.07701 * 4 2 1 6 6 C 1.39162 * 111.00220 * 187.25187 * 5 4 2 7 7 C 1.39203 * 120.06029 * 179.97438 * 6 5 4 8 8 N 1.32012 * 119.93045 * 179.97438 * 7 6 5 9 9 C 1.32399 * 120.05339 * 359.97438 * 8 7 6 10 10 F 1.35103 * 119.93442 * 180.02562 * 9 8 7 11 11 C 1.38465 * 120.12645 * 359.97438 * 9 8 7 12 12 N 1.32219 * 120.06656 * 359.78466 * 11 9 8 13 13 C 1.46901 * 111.27021 * 63.10393 * 5 4 2 14 14 C 1.53242 * 109.33831 * 296.89779 * 13 5 4 15 15 H 1.09007 * 109.62517 * 294.11966 * 14 13 5 16 16 C 1.52996 * 109.78902 * 173.63416 * 14 13 5 17 17 N 1.47075 * 108.52125 * 53.82891 * 14 13 5 18 18 C 1.36936 * 120.88323 * 128.79407 * 17 14 13 19 19 H 1.08001 * 120.00045 * 231.71261 * 18 17 14 20 20 C 1.38814 * 119.99866 * 51.71170 * 18 17 14 21 21 N 1.31619 * 119.99822 * 205.82521 * 20 18 17 22 22 Si 1.86798 * 120.00079 * 25.82015 * 20 18 17 23 23 H 1.48499 * 109.47150 * 94.76437 * 22 20 18 24 24 H 1.48500 * 109.47127 * 214.76661 * 22 20 18 25 25 H 1.48499 * 109.47173 * 334.76635 * 22 20 18 26 26 H 1.09002 * 109.46852 * 299.61317 * 1 2 3 27 27 H 1.08998 * 109.47130 * 59.61464 * 1 2 3 28 28 H 1.09002 * 109.47189 * 179.61566 * 1 2 3 29 29 H 1.09001 * 109.49332 * 306.11423 * 4 2 1 30 30 H 1.09002 * 109.49496 * 186.03537 * 4 2 1 31 31 H 1.08001 * 120.03600 * 359.95501 * 7 6 5 32 32 H 1.07995 * 119.96894 * 180.02562 * 11 9 8 33 33 H 1.08996 * 109.49106 * 56.85650 * 13 5 4 34 34 H 1.09003 * 109.49199 * 176.94019 * 13 5 4 35 35 H 1.08996 * 109.47047 * 293.07378 * 16 14 13 36 36 H 1.08999 * 109.47391 * 53.07151 * 16 14 13 37 37 H 1.08995 * 109.46940 * 173.07235 * 16 14 13 38 38 H 0.97006 * 119.99896 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0268 0.0000 4 6 2.0448 -0.7300 1.2451 5 7 1.6788 -2.1502 1.1624 6 6 1.9849 -2.8139 2.3467 7 6 1.7145 -4.1734 2.4740 8 7 2.0064 -4.8006 3.5984 9 6 2.5562 -4.1376 4.6040 10 9 2.8544 -4.7819 5.7534 11 6 2.8271 -2.7854 4.4794 12 7 2.5411 -2.1535 3.3537 13 6 2.3225 -2.8004 0.0131 14 6 1.8191 -2.1552 -1.2825 15 1 0.7568 -2.3654 -1.4075 16 6 2.5974 -2.7135 -2.4756 17 7 2.0280 -0.7021 -1.1926 18 6 2.6694 -0.0210 -2.1925 19 1 3.4990 0.6291 -1.9570 20 6 2.2533 -0.1663 -3.5088 21 7 3.1028 0.0359 -4.4936 22 14 0.4879 -0.6489 -3.8825 23 1 -0.3177 0.5738 -4.1300 24 1 0.4561 -1.5151 -5.0883 25 1 -0.0783 -1.3890 -2.7263 26 1 -0.3633 0.5078 0.8935 27 1 -0.3633 0.5198 -0.8865 28 1 -0.3634 -1.0277 -0.0069 29 1 1.5965 -0.2901 2.1360 30 1 3.1294 -0.6365 1.2991 31 1 1.2662 -4.7146 1.6540 32 1 3.2759 -2.2472 5.3011 33 1 3.4033 -2.6780 0.0844 34 1 2.0756 -3.8621 0.0106 35 1 3.6364 -2.3896 -2.4152 36 1 2.5548 -3.8025 -2.4597 37 1 2.1554 -2.3460 -3.4016 38 1 2.8122 -0.0659 -5.4135 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882519107.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:45 Heat of formation + Delta-G solvation = 38.671713 kcal Electronic energy + Delta-G solvation = -22703.155623 eV Core-core repulsion = 19303.309269 eV Total energy + Delta-G solvation = -3399.846354 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.09780 -42.39910 -40.19012 -36.95391 -35.27054 -34.50966 -33.62195 -31.27780 -29.79865 -28.09535 -26.95637 -25.78689 -25.17828 -23.51349 -22.69388 -20.39622 -19.27457 -19.12527 -18.79837 -18.16810 -17.39148 -17.00620 -16.31820 -16.14534 -15.88458 -15.47404 -15.29168 -15.03151 -14.86211 -14.60285 -14.51034 -14.12990 -13.81990 -13.31401 -13.09497 -12.92543 -12.65772 -12.52349 -12.43582 -12.31770 -12.28009 -11.81932 -11.75894 -11.58533 -11.24841 -11.04121 -10.40509 -10.37396 -9.24430 -8.41619 -8.19906 -5.68619 -0.45291 -0.13860 1.37644 1.46966 1.56477 2.12296 2.33979 2.45655 2.51042 3.03514 3.10159 3.22685 3.35015 3.73104 3.93401 4.05865 4.10956 4.28035 4.39498 4.44878 4.48502 4.55332 4.73287 4.73870 4.81437 4.89039 4.96732 5.07807 5.16291 5.29593 5.31580 5.41036 5.61000 5.67198 5.82338 6.00642 6.12380 6.33962 6.52172 7.11190 7.63868 8.22217 8.98013 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.034772 B = 0.004823 C = 0.004663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.055915 B = 5803.969767 C = 6003.689286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.156 3.844 3 H 0.066 0.934 4 C 0.074 3.926 5 N -0.459 5.459 6 C 0.257 3.743 7 C 0.079 3.921 8 N -0.465 5.465 9 C 0.205 3.795 10 F -0.108 7.108 11 C 0.083 3.917 12 N -0.470 5.470 13 C 0.058 3.942 14 C 0.163 3.837 15 H 0.048 0.952 16 C -0.131 4.131 17 N -0.604 5.604 18 C -0.268 4.268 19 H 0.026 0.974 20 C 0.026 3.974 21 N -0.932 5.932 22 Si 0.911 3.089 23 H -0.304 1.304 24 H -0.300 1.300 25 H -0.230 1.230 26 H 0.067 0.933 27 H 0.030 0.970 28 H 0.055 0.945 29 H 0.093 0.907 30 H 0.034 0.966 31 H 0.203 0.797 32 H 0.212 0.788 33 H 0.038 0.962 34 H 0.111 0.889 35 H 0.044 0.956 36 H 0.078 0.922 37 H 0.037 0.963 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.688 -8.093 15.736 18.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.050 3.950 3 H 0.084 0.916 4 C -0.054 4.054 5 N -0.175 5.175 6 C 0.022 3.978 7 C -0.086 4.086 8 N -0.184 5.184 9 C 0.049 3.951 10 F -0.087 7.087 11 C -0.080 4.080 12 N -0.190 5.190 13 C -0.069 4.069 14 C 0.058 3.942 15 H 0.065 0.935 16 C -0.189 4.189 17 N -0.329 5.329 18 C -0.398 4.398 19 H 0.044 0.956 20 C -0.174 4.174 21 N -0.573 5.573 22 Si 0.739 3.261 23 H -0.232 1.232 24 H -0.227 1.227 25 H -0.153 1.153 26 H 0.086 0.914 27 H 0.049 0.951 28 H 0.074 0.926 29 H 0.112 0.888 30 H 0.053 0.947 31 H 0.219 0.781 32 H 0.229 0.771 33 H 0.056 0.944 34 H 0.129 0.871 35 H 0.063 0.937 36 H 0.096 0.904 37 H 0.056 0.944 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.113 -8.091 15.475 17.940 hybrid contribution 0.173 0.188 -0.505 0.566 sum -3.940 -7.903 14.970 17.380 Atomic orbital electron populations 1.22047 0.96617 1.01501 1.00353 1.20977 0.93236 0.95193 0.85576 0.91612 1.22350 0.98549 0.85287 0.99200 1.59022 1.53573 1.04714 1.00196 1.21196 0.92129 0.92094 0.92356 1.23358 0.99099 0.90868 0.95281 1.67699 1.10282 1.40006 1.00411 1.19134 1.01774 0.89971 0.84257 1.91630 1.90533 1.82450 1.44074 1.23864 0.97041 0.90265 0.96801 1.68539 1.10724 1.38684 1.01015 1.22874 0.96270 0.99192 0.88552 1.20965 0.97326 0.83605 0.92320 0.93486 1.21785 1.00322 0.99648 0.97140 1.44517 1.66789 1.02006 1.19607 1.18191 1.09575 1.25878 0.86120 0.95623 1.26216 0.99306 0.96212 0.95668 1.70048 1.35563 1.51902 0.99803 0.86434 0.84016 0.77470 0.78221 1.23230 1.22734 1.15277 0.91362 0.95091 0.92621 0.88842 0.94719 0.78090 0.77134 0.94357 0.87067 0.93721 0.90369 0.94408 0.92788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.82 9.22 71.98 0.66 -4.15 16 2 C 0.16 5.70 3.31 44.96 0.15 5.85 16 3 H 0.07 2.54 7.95 -2.38 -0.02 2.52 16 4 C 0.07 2.31 4.22 86.38 0.36 2.67 16 5 N -0.46 -12.98 4.17 -700.49 -2.92 -15.90 16 6 C 0.26 6.52 6.40 132.95 0.85 7.38 16 7 C 0.08 1.77 10.32 84.90 0.88 2.64 16 8 N -0.46 -11.25 10.50 -195.82 -2.06 -13.30 16 9 C 0.20 4.52 8.43 84.66 0.71 5.23 16 10 F -0.11 -2.29 17.29 44.97 0.78 -1.51 16 11 C 0.08 1.64 11.20 84.69 0.95 2.59 16 12 N -0.47 -11.67 8.85 -192.40 -1.70 -13.37 16 13 C 0.06 1.69 4.72 86.38 0.41 2.10 16 14 C 0.16 6.02 2.05 44.96 0.09 6.11 16 15 H 0.05 1.76 5.98 -2.38 -0.01 1.74 16 16 C -0.13 -5.09 7.84 71.98 0.56 -4.52 16 17 N -0.60 -25.95 1.98 -650.65 -1.29 -27.23 16 18 C -0.27 -14.20 8.71 84.03 0.73 -13.46 16 19 H 0.03 1.57 8.06 -2.91 -0.02 1.55 16 20 C 0.03 1.39 3.76 84.86 0.32 1.71 16 21 N -0.93 -54.79 13.97 21.65 0.30 -54.49 16 22 Si 0.91 42.93 25.42 68.60 1.74 44.67 16 23 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16 24 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 25 H -0.23 -9.84 5.18 99.48 0.52 -9.33 16 26 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.05 1.82 7.09 -2.39 -0.02 1.80 16 29 H 0.09 2.65 7.67 -2.39 -0.02 2.63 16 30 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.20 3.43 7.15 -2.91 -0.02 3.41 16 32 H 0.21 2.55 8.06 -2.91 -0.02 2.52 16 33 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.11 2.45 6.65 -2.39 -0.02 2.43 16 35 H 0.04 1.95 7.68 -2.39 -0.02 1.93 16 36 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.04 1.66 3.78 -2.39 -0.01 1.65 16 38 H 0.26 14.77 8.31 -92.70 -0.77 14.00 16 Total: -1.00 -62.54 300.83 2.42 -60.12 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: 0.88 Total: 6.88 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: 6.68 Total: 14.14 kcal Atomic # 7 Polarization: -116.63 SS G_CDS: -7.67 Total: -124.30 kcal Atomic # 9 Polarization: -2.29 SS G_CDS: 0.78 Total: -1.51 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 1.74 Total: 44.67 kcal Total: -62.54 2.42 -60.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882519107.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.793 kcal (2) G-P(sol) polarization free energy of solvation -62.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds