Wall clock time and date at job start Tue Mar 31 2020 02:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99696 * 2 1 4 4 H 1.48497 * 109.47052 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47156 * 299.99764 * 3 2 1 6 6 H 1.48498 * 109.47200 * 59.99749 * 3 2 1 7 7 C 1.37869 * 120.00194 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00285 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00278 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47491 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47159 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00262 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99928 * 179.72352 * 11 10 9 14 14 C 1.46499 * 120.00199 * 180.27479 * 13 11 10 15 15 H 1.09001 * 110.85718 * 322.67178 * 14 13 11 16 16 C 1.54632 * 110.96962 * 86.45510 * 14 13 11 17 17 C 1.51278 * 104.19463 * 142.91861 * 16 14 13 18 18 O 1.21286 * 124.93949 * 163.78904 * 17 16 14 19 19 N 1.34412 * 110.11694 * 343.74777 * 17 16 14 20 20 C 1.46503 * 124.34978 * 179.57404 * 19 17 16 21 21 C 1.53000 * 109.47670 * 89.97655 * 20 19 17 22 22 C 1.52996 * 117.49969 * 243.62716 * 21 20 19 23 23 C 1.52992 * 117.50296 * 174.99910 * 21 20 19 24 24 C 1.46764 * 111.30359 * 359.59513 * 19 17 16 25 25 H 0.97004 * 120.00291 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46801 * 59.99998 * 9 7 2 27 27 H 1.09000 * 109.47461 * 300.00530 * 9 7 2 28 28 H 1.09004 * 109.47066 * 60.00201 * 10 9 7 29 29 H 1.08994 * 109.47405 * 300.00031 * 10 9 7 30 30 H 0.97000 * 120.00317 * 0.28382 * 13 11 10 31 31 H 1.09002 * 110.48765 * 261.60135 * 16 14 13 32 32 H 1.08999 * 110.48131 * 24.23880 * 16 14 13 33 33 H 1.09000 * 109.47407 * 209.97720 * 20 19 17 34 34 H 1.09002 * 109.46838 * 329.97167 * 20 19 17 35 35 H 1.09002 * 115.54529 * 29.32704 * 21 20 19 36 36 H 1.09011 * 117.50021 * 359.97438 * 22 21 20 37 37 H 1.08998 * 117.49979 * 145.01417 * 22 21 20 38 38 H 1.08992 * 117.50362 * 214.97891 * 23 21 20 39 39 H 1.08998 * 117.49763 * 359.97438 * 23 21 20 40 40 H 1.08997 * 110.24337 * 258.01476 * 24 19 17 41 41 H 1.08996 * 110.24586 * 136.01735 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 6 1.4919 -4.9671 0.0033 12 8 0.2791 -4.9672 0.0041 13 7 2.1658 -6.1343 -0.0023 14 6 1.4334 -7.4030 -0.0066 15 1 0.5386 -7.3367 0.6123 16 6 1.0778 -7.8318 -1.4491 17 6 1.2334 -9.3365 -1.4379 18 8 0.7873 -10.0873 -2.2795 19 7 1.9388 -9.7203 -0.3600 20 6 2.2651 -11.1117 -0.0381 21 6 3.5995 -11.4859 -0.6863 22 6 3.5839 -12.5827 -1.7529 23 6 4.1753 -12.8678 -0.3709 24 6 2.3398 -8.5663 0.4533 25 1 -0.4851 0.8401 -0.0004 26 1 0.6241 -2.5574 -0.8880 27 1 0.6247 -2.5563 0.8919 28 1 2.8727 -3.6038 0.8910 29 1 2.8713 -3.6047 -0.8890 30 1 3.1358 -6.1343 -0.0032 31 1 0.0502 -7.5563 -1.6866 32 1 1.7688 -7.3820 -2.1620 33 1 2.3417 -11.2263 1.0431 34 1 1.4804 -11.7661 -0.4181 35 1 4.3045 -10.6651 -0.8183 36 1 2.6229 -13.0380 -1.9926 37 1 4.2786 -12.4835 -2.5869 38 1 5.2590 -12.9564 -0.2957 39 1 3.6036 -13.5103 0.2987 40 1 3.3867 -8.3229 0.2724 41 1 2.1777 -8.7755 1.5107 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882930446.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:03:59 Heat of formation + Delta-G solvation = -54.507251 kcal Electronic energy + Delta-G solvation = -21232.795431 eV Core-core repulsion = 17920.076088 eV Total energy + Delta-G solvation = -3312.719343 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.84268 -39.09994 -37.71220 -36.62874 -34.23240 -33.48892 -31.62077 -30.64186 -27.80580 -27.02879 -25.55280 -22.77512 -22.49380 -21.45423 -21.05951 -20.08393 -19.47525 -17.30466 -17.09807 -16.66766 -15.89204 -15.67426 -15.31028 -15.17569 -14.88893 -14.46951 -14.27646 -13.90397 -13.72236 -13.23153 -13.15863 -12.84193 -12.47974 -12.18767 -12.03090 -11.88904 -11.81391 -11.39678 -11.19663 -10.96820 -10.87068 -10.60408 -10.43158 -10.06453 -10.00462 -9.71731 -9.24824 -9.07014 -9.05419 -8.96972 -8.34910 -5.98667 -4.03244 2.40471 2.57425 3.11457 3.30601 3.31003 3.38737 3.41599 3.42885 4.11793 4.27995 4.35318 4.45467 4.53851 4.59075 4.70282 4.75169 4.92526 5.10275 5.15167 5.19550 5.26718 5.35906 5.36551 5.42861 5.54640 5.73119 5.76419 5.79438 5.82822 6.16567 6.17649 6.22658 6.53200 6.82106 6.83525 7.70617 7.73098 7.82274 7.95993 8.03885 8.34970 8.65688 9.05406 9.60682 11.12241 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.042018 B = 0.002638 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.221082 B =10612.022237 C =10903.604626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.129 4.129 11 C 0.513 3.487 12 O -0.528 6.528 13 N -0.736 5.736 14 C 0.138 3.862 15 H 0.109 0.891 16 C -0.169 4.169 17 C 0.524 3.476 18 O -0.528 6.528 19 N -0.618 5.618 20 C 0.157 3.843 21 C -0.174 4.174 22 C -0.173 4.173 23 C -0.175 4.175 24 C 0.099 3.901 25 H 0.261 0.739 26 H 0.024 0.976 27 H 0.024 0.976 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.400 0.600 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.106 0.894 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.077 0.923 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.730 -23.671 1.827 25.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.565 4.565 8 H 0.075 0.925 9 C -0.002 4.002 10 C -0.169 4.169 11 C 0.301 3.699 12 O -0.402 6.402 13 N -0.391 5.391 14 C 0.031 3.969 15 H 0.127 0.873 16 C -0.210 4.210 17 C 0.312 3.688 18 O -0.404 6.404 19 N -0.353 5.353 20 C 0.035 3.965 21 C -0.194 4.194 22 C -0.210 4.210 23 C -0.213 4.213 24 C -0.024 4.024 25 H 0.070 0.930 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.235 0.765 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.124 0.876 36 H 0.115 0.885 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.095 0.905 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.435 -23.995 1.406 25.473 hybrid contribution 1.081 0.927 0.000 1.424 sum 9.516 -23.068 1.406 24.993 Atomic orbital electron populations 1.70005 1.06054 1.26519 1.50196 1.25028 0.94829 0.99268 0.95295 0.86537 0.79982 0.83840 0.77602 1.19760 1.21011 1.21022 1.21244 0.92956 0.90980 1.51365 0.92545 1.18913 0.93182 0.89384 0.98683 1.21880 1.00757 0.91645 1.02637 1.21649 0.88723 0.85480 0.74005 1.90691 1.14426 1.87466 1.47605 1.46182 1.09924 1.04671 1.78286 1.21622 0.96147 0.83460 0.95654 0.87324 1.22877 1.06214 0.92585 0.99371 1.20928 0.76625 0.90901 0.80381 1.90717 1.50072 1.59779 1.39786 1.48225 1.54786 1.06441 1.25820 1.20948 0.94844 0.80943 0.99732 1.22758 0.99292 0.93064 1.04243 1.23025 1.02998 1.02436 0.92529 1.22953 1.00828 0.98078 0.99440 1.22301 0.98974 0.84996 0.96157 0.92973 0.95778 0.95782 0.90081 0.90084 0.76536 0.87259 0.87280 0.89789 0.89753 0.87598 0.88490 0.88896 0.88660 0.88613 0.90522 0.89419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.06 13.29 55.43 0.74 -26.33 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.53 -14.59 9.11 -34.44 -0.31 -14.91 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.04 0.93 4.26 -27.89 -0.12 0.81 16 10 C -0.13 -2.43 5.64 -27.88 -0.16 -2.58 16 11 C 0.51 8.85 7.83 -10.98 -0.09 8.77 16 12 O -0.53 -11.51 15.73 5.55 0.09 -11.42 16 13 N -0.74 -8.50 5.18 -52.22 -0.27 -8.77 16 14 C 0.14 1.45 3.43 -66.30 -0.23 1.22 16 15 H 0.11 1.31 7.73 -51.93 -0.40 0.91 16 16 C -0.17 -1.98 6.59 -26.74 -0.18 -2.15 16 17 C 0.52 6.53 8.02 -10.87 -0.09 6.44 16 18 O -0.53 -8.53 17.60 5.55 0.10 -8.43 16 19 N -0.62 -5.72 2.93 -172.42 -0.51 -6.23 16 20 C 0.16 1.22 6.21 -4.04 -0.03 1.19 16 21 C -0.17 -1.29 6.01 -90.63 -0.54 -1.84 16 22 C -0.17 -1.33 10.18 -26.73 -0.27 -1.61 16 23 C -0.18 -1.05 10.25 -26.73 -0.27 -1.33 16 24 C 0.10 0.73 7.07 -3.12 -0.02 0.71 16 25 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 26 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 27 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 28 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 29 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 30 H 0.40 3.32 8.37 -40.82 -0.34 2.98 16 31 H 0.11 1.43 8.14 -51.93 -0.42 1.01 16 32 H 0.11 1.23 8.08 -51.93 -0.42 0.81 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.75 7.67 -51.93 -0.40 0.35 16 35 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.10 0.80 8.03 -51.92 -0.42 0.38 16 37 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.44 7.77 -51.93 -0.40 0.04 16 41 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 348.80 15.07 5.26 5.26 Total: -1.00 -35.33 348.80 -8.59 -43.91 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -6.57 Total: -0.59 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: -2.40 Total: -3.73 kcal Atomic # 7 Polarization: -41.28 SS G_CDS: -0.04 Total: -41.32 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: 0.19 Total: -19.85 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.33 -8.59 -43.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882930446.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.593 kcal (2) G-P(sol) polarization free energy of solvation -35.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds