Wall clock time and date at job start Tue Mar 31 2020 02:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99696 * 2 1 4 4 H 1.48497 * 109.47052 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47156 * 299.99764 * 3 2 1 6 6 H 1.48498 * 109.47200 * 59.99749 * 3 2 1 7 7 C 1.37869 * 120.00194 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00285 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00278 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47491 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47159 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00262 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99928 * 179.72352 * 11 10 9 14 14 C 1.46499 * 120.00199 * 180.27479 * 13 11 10 15 15 H 1.09001 * 110.85718 * 322.67178 * 14 13 11 16 16 C 1.54632 * 110.96962 * 86.45510 * 14 13 11 17 17 C 1.51278 * 104.19463 * 142.91861 * 16 14 13 18 18 O 1.21286 * 124.93949 * 163.78904 * 17 16 14 19 19 N 1.34412 * 110.11694 * 343.74777 * 17 16 14 20 20 C 1.46503 * 124.34978 * 179.57404 * 19 17 16 21 21 C 1.53000 * 109.47670 * 89.97655 * 20 19 17 22 22 C 1.52996 * 117.49969 * 243.62716 * 21 20 19 23 23 C 1.52992 * 117.50296 * 174.99910 * 21 20 19 24 24 C 1.46764 * 111.30359 * 359.59513 * 19 17 16 25 25 H 0.97004 * 120.00291 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46801 * 59.99998 * 9 7 2 27 27 H 1.09000 * 109.47461 * 300.00530 * 9 7 2 28 28 H 1.09004 * 109.47066 * 60.00201 * 10 9 7 29 29 H 1.08994 * 109.47405 * 300.00031 * 10 9 7 30 30 H 0.97000 * 120.00317 * 0.28382 * 13 11 10 31 31 H 1.09002 * 110.48765 * 261.60135 * 16 14 13 32 32 H 1.08999 * 110.48131 * 24.23880 * 16 14 13 33 33 H 1.09000 * 109.47407 * 209.97720 * 20 19 17 34 34 H 1.09002 * 109.46838 * 329.97167 * 20 19 17 35 35 H 1.09002 * 115.54529 * 29.32704 * 21 20 19 36 36 H 1.09011 * 117.50021 * 359.97438 * 22 21 20 37 37 H 1.08998 * 117.49979 * 145.01417 * 22 21 20 38 38 H 1.08992 * 117.50362 * 214.97891 * 23 21 20 39 39 H 1.08998 * 117.49763 * 359.97438 * 23 21 20 40 40 H 1.08997 * 110.24337 * 258.01476 * 24 19 17 41 41 H 1.08996 * 110.24586 * 136.01735 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 6 1.4919 -4.9671 0.0033 12 8 0.2791 -4.9672 0.0041 13 7 2.1658 -6.1343 -0.0023 14 6 1.4334 -7.4030 -0.0066 15 1 0.5386 -7.3367 0.6123 16 6 1.0778 -7.8318 -1.4491 17 6 1.2334 -9.3365 -1.4379 18 8 0.7873 -10.0873 -2.2795 19 7 1.9388 -9.7203 -0.3600 20 6 2.2651 -11.1117 -0.0381 21 6 3.5995 -11.4859 -0.6863 22 6 3.5839 -12.5827 -1.7529 23 6 4.1753 -12.8678 -0.3709 24 6 2.3398 -8.5663 0.4533 25 1 -0.4851 0.8401 -0.0004 26 1 0.6241 -2.5574 -0.8880 27 1 0.6247 -2.5563 0.8919 28 1 2.8727 -3.6038 0.8910 29 1 2.8713 -3.6047 -0.8890 30 1 3.1358 -6.1343 -0.0032 31 1 0.0502 -7.5563 -1.6866 32 1 1.7688 -7.3820 -2.1620 33 1 2.3417 -11.2263 1.0431 34 1 1.4804 -11.7661 -0.4181 35 1 4.3045 -10.6651 -0.8183 36 1 2.6229 -13.0380 -1.9926 37 1 4.2786 -12.4835 -2.5869 38 1 5.2590 -12.9564 -0.2957 39 1 3.6036 -13.5103 0.2987 40 1 3.3867 -8.3229 0.2724 41 1 2.1777 -8.7755 1.5107 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882930446.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:03:59 Heat of formation + Delta-G solvation = -79.112163 kcal Electronic energy + Delta-G solvation = -21233.862380 eV Core-core repulsion = 17920.076088 eV Total energy + Delta-G solvation = -3313.786292 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.77742 -40.41861 -38.34741 -37.67435 -35.56081 -35.24362 -33.13854 -32.01702 -28.70609 -28.07155 -27.13429 -24.07284 -23.23697 -22.47258 -21.96673 -21.31900 -20.45677 -18.82801 -18.11404 -17.86133 -17.25657 -16.73124 -16.45133 -16.37188 -16.04203 -15.92438 -15.15139 -14.98513 -14.64140 -14.53979 -14.15620 -14.12500 -13.91910 -13.47859 -13.19564 -12.89885 -12.79824 -12.62163 -12.42105 -12.39403 -12.31723 -11.87081 -11.59812 -11.49032 -11.24945 -11.17008 -10.87270 -10.68354 -10.55410 -10.10416 -9.81843 -8.15833 -6.29196 1.42822 1.44287 1.45129 1.58261 1.71365 1.81658 2.22203 2.45890 2.88444 3.17762 3.28835 3.47449 3.73992 3.79109 3.95517 3.98596 4.10407 4.14207 4.31470 4.48038 4.51935 4.56430 4.57298 4.63265 4.71007 4.79133 4.80388 4.87602 5.01769 5.15808 5.19991 5.25426 5.45435 5.51256 5.55230 5.68644 5.89684 5.97592 6.20865 6.62410 6.90615 7.03064 7.37641 7.41465 8.96886 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.042018 B = 0.002638 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.221082 B =10612.022237 C =10903.604626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.009 4.009 3 Si 0.972 3.028 4 H -0.251 1.251 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.539 4.539 8 H 0.077 0.923 9 C 0.039 3.961 10 C -0.119 4.119 11 C 0.517 3.483 12 O -0.583 6.583 13 N -0.705 5.705 14 C 0.138 3.862 15 H 0.093 0.907 16 C -0.168 4.168 17 C 0.520 3.480 18 O -0.574 6.574 19 N -0.608 5.608 20 C 0.153 3.847 21 C -0.178 4.178 22 C -0.195 4.195 23 C -0.154 4.154 24 C 0.108 3.892 25 H 0.262 0.738 26 H -0.019 1.019 27 H -0.017 1.017 28 H 0.110 0.890 29 H 0.106 0.894 30 H 0.422 0.578 31 H 0.086 0.914 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.068 0.932 35 H 0.109 0.891 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.373 -24.249 3.225 27.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.796 3.204 4 H -0.175 1.175 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.577 4.577 8 H 0.096 0.904 9 C 0.001 3.999 10 C -0.159 4.159 11 C 0.305 3.695 12 O -0.462 6.462 13 N -0.360 5.360 14 C 0.032 3.968 15 H 0.111 0.889 16 C -0.210 4.210 17 C 0.308 3.692 18 O -0.454 6.454 19 N -0.341 5.341 20 C 0.032 3.968 21 C -0.197 4.197 22 C -0.233 4.233 23 C -0.191 4.191 24 C -0.014 4.014 25 H 0.070 0.930 26 H -0.001 1.001 27 H 0.002 0.998 28 H 0.128 0.872 29 H 0.124 0.876 30 H 0.261 0.739 31 H 0.105 0.895 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.086 0.914 35 H 0.127 0.873 36 H 0.102 0.898 37 H 0.109 0.891 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 12.177 -24.617 2.841 27.611 hybrid contribution -0.064 1.036 -0.436 1.126 sum 12.113 -23.581 2.405 26.619 Atomic orbital electron populations 1.70183 1.08298 1.27641 1.51771 1.26127 0.95693 1.03934 0.94856 0.85303 0.79420 0.78294 0.77400 1.17460 1.20923 1.20771 1.21768 0.94062 0.91616 1.50248 0.90449 1.18714 0.93836 0.92583 0.94725 1.21636 0.99240 0.89787 1.05190 1.21327 0.87795 0.86632 0.73707 1.90688 1.16762 1.88254 1.50517 1.45729 1.10913 1.03443 1.75877 1.21631 0.96607 0.83854 0.94708 0.88871 1.22807 1.05133 0.92635 1.00391 1.20980 0.76756 0.90731 0.80729 1.90691 1.52249 1.60675 1.41755 1.48290 1.53338 1.07802 1.24631 1.21135 0.94559 0.79501 1.01565 1.22745 0.99135 0.93692 1.04120 1.23048 1.02791 1.03767 0.93645 1.23028 1.01580 0.96781 0.97702 1.22440 0.99476 0.82414 0.97088 0.92969 1.00086 0.99821 0.87223 0.87609 0.73886 0.89541 0.86724 0.86610 0.91388 0.87338 0.89784 0.89133 0.87436 0.87461 0.87417 0.86522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.96 13.29 21.44 0.28 -58.67 16 2 C -0.01 -0.51 5.46 84.65 0.46 -0.05 16 3 Si 0.97 43.57 29.54 68.60 2.03 45.60 16 4 H -0.25 -10.29 7.11 99.48 0.71 -9.59 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 6 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.54 -29.75 9.11 25.60 0.23 -29.51 16 8 H 0.08 3.86 7.74 -2.91 -0.02 3.83 16 9 C 0.04 2.09 4.26 29.85 0.13 2.22 16 10 C -0.12 -4.30 5.64 29.85 0.17 -4.13 16 11 C 0.52 17.50 7.83 87.66 0.69 18.19 16 12 O -0.58 -26.39 15.73 -3.04 -0.05 -26.44 16 13 N -0.70 -14.50 5.18 -437.53 -2.27 -16.77 16 14 C 0.14 2.67 3.43 46.05 0.16 2.82 16 15 H 0.09 2.19 7.73 -2.39 -0.02 2.17 16 16 C -0.17 -3.92 6.59 30.59 0.20 -3.71 16 17 C 0.52 12.83 8.02 87.90 0.71 13.53 16 18 O -0.57 -19.17 17.60 -3.05 -0.05 -19.22 16 19 N -0.61 -9.90 2.93 -818.00 -2.40 -12.30 16 20 C 0.15 2.01 6.21 86.38 0.54 2.55 16 21 C -0.18 -2.22 6.01 -10.80 -0.06 -2.28 16 22 C -0.20 -2.85 10.18 30.59 0.31 -2.54 16 23 C -0.15 -1.43 10.25 30.59 0.31 -1.12 16 24 C 0.11 1.16 7.07 86.83 0.61 1.78 16 25 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 26 H -0.02 -1.18 8.10 -2.38 -0.02 -1.20 16 27 H -0.02 -1.01 8.10 -2.39 -0.02 -1.03 16 28 H 0.11 3.35 8.14 -2.38 -0.02 3.33 16 29 H 0.11 3.31 8.14 -2.39 -0.02 3.30 16 30 H 0.42 5.14 8.37 -92.71 -0.78 4.36 16 31 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.11 2.51 8.08 -2.39 -0.02 2.49 16 33 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.07 1.15 7.67 -2.39 -0.02 1.13 16 35 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.08 1.42 8.03 -2.38 -0.02 1.40 16 37 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.11 0.62 7.77 -2.39 -0.02 0.60 16 41 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -82.47 348.80 2.24 -80.23 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: 0.24 Total: 9.84 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: 4.45 Total: -2.26 kcal Atomic # 7 Polarization: -83.36 SS G_CDS: -4.38 Total: -87.74 kcal Atomic # 8 Polarization: -45.56 SS G_CDS: -0.10 Total: -45.66 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -82.47 2.24 -80.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882930446.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.114 kcal (2) G-P(sol) polarization free energy of solvation -82.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds