Wall clock time and date at job start Tue Mar 31 2020 01:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47129 * 2 1 4 4 C 1.52997 * 109.47239 * 120.00344 * 2 1 3 5 5 H 1.09003 * 109.46620 * 184.99847 * 4 2 1 6 6 O 1.42898 * 109.47177 * 305.00089 * 4 2 1 7 7 C 1.53003 * 109.47420 * 65.00185 * 4 2 1 8 8 C 1.52994 * 109.47436 * 174.99995 * 7 4 2 9 9 O 1.42895 * 109.47410 * 179.97438 * 8 7 4 10 10 C 1.35893 * 117.00423 * 179.97438 * 9 8 7 11 11 C 1.38828 * 120.01698 * 359.97438 * 10 9 8 12 12 C 1.38197 * 120.08074 * 180.02562 * 11 10 9 13 13 C 1.38159 * 120.12241 * 359.74570 * 12 11 10 14 14 C 1.38895 * 120.03923 * 0.50298 * 13 12 11 15 15 O 1.35750 * 120.04082 * 179.76935 * 14 13 12 16 16 C 1.34837 * 117.00113 * 174.18912 * 15 14 13 17 17 H 1.07997 * 119.99599 * 5.05344 * 16 15 14 18 18 C 1.38644 * 119.99958 * 185.05785 * 16 15 14 19 19 N 1.31560 * 120.00349 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00131 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46872 * 89.99682 * 20 18 16 22 22 H 1.48493 * 109.47580 * 210.00125 * 20 18 16 23 23 H 1.48505 * 109.46911 * 330.00443 * 20 18 16 24 24 C 1.38574 * 120.02538 * 179.97438 * 10 9 8 25 25 H 1.09002 * 109.46870 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46950 * 299.99127 * 1 2 3 27 27 H 1.08999 * 109.47363 * 59.99628 * 1 2 3 28 28 H 1.09003 * 109.46760 * 240.00393 * 2 1 3 29 29 H 1.09000 * 109.47224 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.47302 * 300.00410 * 3 2 1 31 31 H 1.08999 * 109.46491 * 60.00592 * 3 2 1 32 32 H 0.96696 * 114.00264 * 59.99967 * 6 4 2 33 33 H 1.08997 * 109.46831 * 54.99553 * 7 4 2 34 34 H 1.09000 * 109.46833 * 295.00321 * 7 4 2 35 35 H 1.09000 * 109.47187 * 59.99509 * 8 7 4 36 36 H 1.09002 * 109.46788 * 299.99523 * 8 7 4 37 37 H 1.07996 * 119.96124 * 0.04140 * 11 10 9 38 38 H 1.07994 * 119.93785 * 179.97438 * 12 11 10 39 39 H 1.07998 * 119.98058 * 180.27983 * 13 12 11 40 40 H 0.96997 * 119.99954 * 180.02562 * 19 18 16 41 41 H 1.08000 * 120.05694 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1264 -0.6444 1.2950 6 8 1.4702 -0.1190 2.4130 7 6 1.6353 -2.1956 1.1879 8 6 2.2503 -2.9430 2.3727 9 8 1.8719 -4.3198 2.3158 10 6 2.3385 -5.1293 3.3025 11 6 3.1451 -4.6081 4.3051 12 6 3.6208 -5.4302 5.3089 13 6 3.2910 -6.7718 5.3209 14 6 2.4887 -7.2996 4.3175 15 8 2.1685 -8.6188 4.3267 16 6 1.2906 -9.0422 3.3950 17 1 0.9388 -8.3601 2.6352 18 6 0.8394 -10.3531 3.4126 19 7 1.2675 -11.1838 4.3386 20 14 -0.3774 -10.9395 2.1223 21 1 0.3624 -11.4715 0.9498 22 1 -1.2306 -12.0104 2.6968 23 1 -1.2314 -9.8024 1.6943 24 6 2.0096 -6.4754 3.3087 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9562 0.8901 32 1 0.5042 -0.1510 2.4395 33 1 1.9949 -2.6326 0.2563 34 1 0.5492 -2.2763 1.2315 35 1 1.8907 -2.5059 3.3042 36 1 3.3365 -2.8623 2.3289 37 1 3.4009 -3.5589 4.3007 38 1 4.2484 -5.0225 6.0874 39 1 3.6604 -7.4113 6.1090 40 1 0.9522 -12.1010 4.3506 41 1 1.3826 -6.8826 2.5293 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882994306.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:02 Heat of formation + Delta-G solvation = -111.566601 kcal Electronic energy + Delta-G solvation = -21310.420399 eV Core-core repulsion = 17962.934026 eV Total energy + Delta-G solvation = -3347.486373 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.71250 -38.96545 -37.95233 -35.64016 -34.09597 -32.28293 -32.02336 -29.42710 -28.57357 -27.61183 -25.94696 -25.32310 -22.53894 -21.77426 -20.76207 -20.36835 -18.23088 -17.64998 -16.76373 -16.44726 -15.88484 -15.39048 -15.19602 -15.03746 -14.71628 -14.25085 -14.24546 -13.61694 -13.41924 -13.20823 -12.95815 -12.57360 -12.45414 -12.35056 -12.21575 -11.81274 -11.62063 -11.52165 -11.24302 -11.21534 -10.98515 -10.92818 -10.81903 -10.50215 -10.33370 -10.22900 -10.11127 -9.42164 -8.82280 -7.68349 -7.22819 -6.44364 -4.03751 2.24314 2.36910 3.14684 3.15577 3.20713 3.44932 3.98366 4.13580 4.42693 4.49420 4.58270 4.61888 4.84771 4.97301 5.07412 5.11092 5.27591 5.29446 5.31075 5.36717 5.41736 5.51689 5.58116 5.60473 5.71888 5.77731 5.80817 5.89428 5.97057 6.03102 6.15270 6.30164 6.44428 6.69813 7.05316 7.11431 7.25787 7.35496 7.44251 7.59689 8.01298 8.08837 9.01402 9.69690 10.73447 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.021517 B = 0.003300 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.962886 B = 8483.126238 C = 9612.899986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.127 4.127 3 C -0.144 4.144 4 C 0.114 3.886 5 H 0.101 0.899 6 O -0.559 6.559 7 C -0.153 4.153 8 C 0.067 3.933 9 O -0.323 6.323 10 C 0.167 3.833 11 C -0.296 4.296 12 C -0.044 4.044 13 C -0.221 4.221 14 C 0.183 3.817 15 O -0.172 6.172 16 C -0.392 4.392 17 H 0.094 0.906 18 C 0.040 3.960 19 N -0.862 5.862 20 Si 0.941 3.059 21 H -0.273 1.273 22 H -0.277 1.277 23 H -0.267 1.267 24 C -0.265 4.265 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.079 0.921 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.374 0.626 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.118 0.882 40 H 0.270 0.730 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.207 20.777 -7.403 22.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.146 4.146 3 C -0.201 4.201 4 C 0.055 3.945 5 H 0.119 0.881 6 O -0.365 6.365 7 C -0.190 4.190 8 C -0.009 4.009 9 O -0.237 6.237 10 C 0.122 3.878 11 C -0.316 4.316 12 C -0.063 4.063 13 C -0.241 4.241 14 C 0.129 3.871 15 O -0.075 6.075 16 C -0.468 4.468 17 H 0.111 0.889 18 C -0.164 4.164 19 N -0.497 5.497 20 Si 0.766 3.234 21 H -0.198 1.198 22 H -0.202 1.202 23 H -0.191 1.191 24 C -0.285 4.285 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.098 0.902 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.222 0.778 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.129 0.871 38 H 0.132 0.868 39 H 0.136 0.864 40 H 0.080 0.920 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.320 20.387 -7.220 21.630 hybrid contribution -1.029 -0.285 -0.769 1.316 sum -0.709 20.102 -7.989 21.643 Atomic orbital electron populations 1.21923 0.94962 1.02345 1.02227 1.21781 0.96649 0.97375 0.98816 1.21771 1.00957 0.95434 1.01952 1.21897 0.98503 0.89368 0.84724 0.88123 1.86577 1.25519 1.81514 1.42925 1.22311 1.02450 0.95201 0.99084 1.22562 0.99090 0.80231 0.99023 1.85974 1.70905 1.19494 1.47327 1.18634 0.92552 0.89685 0.86907 1.20668 1.10420 0.99819 1.00653 1.20413 0.96835 0.92546 0.96462 1.20162 1.07277 0.95381 1.01238 1.19026 0.91706 0.84661 0.91736 1.84002 1.54969 1.17185 1.51311 1.21376 1.21376 0.96328 1.07766 0.88879 1.25296 0.98076 0.94964 0.98107 1.70042 1.41933 1.05526 1.32220 0.85705 0.79438 0.78865 0.79410 1.19841 1.20238 1.19111 1.20323 1.12312 0.91091 1.04823 0.91975 0.92352 0.92216 0.90225 0.92701 0.92824 0.91992 0.77812 0.89992 0.90360 0.91707 0.92530 0.87052 0.86755 0.86369 0.91993 0.84859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.99 8.52 37.16 0.32 -0.68 16 2 C -0.13 -0.88 2.75 -90.62 -0.25 -1.13 16 3 C -0.14 -0.96 9.09 37.16 0.34 -0.63 16 4 C 0.11 0.96 2.72 -26.73 -0.07 0.89 16 5 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 6 O -0.56 -5.17 12.31 -35.23 -0.43 -5.60 16 7 C -0.15 -1.54 4.89 -26.73 -0.13 -1.67 16 8 C 0.07 0.89 4.64 37.15 0.17 1.06 16 9 O -0.32 -5.84 10.13 -19.40 -0.20 -6.03 16 10 C 0.17 3.42 6.68 -39.24 -0.26 3.15 16 11 C -0.30 -5.49 9.04 -39.38 -0.36 -5.85 16 12 C -0.04 -0.82 10.03 -39.63 -0.40 -1.22 16 13 C -0.22 -4.83 9.99 -39.37 -0.39 -5.23 16 14 C 0.18 4.60 6.65 -39.13 -0.26 4.34 16 15 O -0.17 -5.00 9.76 0.03 0.00 -5.00 16 16 C -0.39 -11.19 9.49 30.88 0.29 -10.90 16 17 H 0.09 2.49 5.20 -52.49 -0.27 2.22 16 18 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 19 N -0.86 -25.48 13.67 55.48 0.76 -24.72 16 20 Si 0.94 20.81 29.55 -169.99 -5.02 15.78 16 21 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 22 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 23 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 24 C -0.27 -6.22 9.10 -39.25 -0.36 -6.58 16 25 H 0.06 0.41 6.68 -51.93 -0.35 0.07 16 26 H 0.06 0.33 6.72 -51.93 -0.35 -0.02 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.45 7.82 -51.93 -0.41 0.04 16 32 H 0.37 2.52 7.19 45.56 0.33 2.85 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 0.77 6.81 -51.93 -0.35 0.42 16 35 H 0.06 0.87 7.34 -51.93 -0.38 0.49 16 36 H 0.06 0.73 7.66 -51.93 -0.40 0.33 16 37 H 0.11 1.76 6.29 -52.49 -0.33 1.43 16 38 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 39 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 40 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.13 3.19 5.64 -52.49 -0.30 2.89 16 LS Contribution 336.46 15.07 5.07 5.07 Total: -1.00 -31.93 336.46 -6.60 -38.54 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -5.32 Total: 5.39 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: -1.46 Total: -23.42 kcal Atomic # 7 Polarization: -25.48 SS G_CDS: 0.76 Total: -24.72 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -0.63 Total: -16.63 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.93 -6.60 -38.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882994306.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.029 kcal (2) G-P(sol) polarization free energy of solvation -31.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds