Wall clock time and date at job start Tue Mar 31 2020 01:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47129 * 2 1 4 4 C 1.52997 * 109.47239 * 120.00344 * 2 1 3 5 5 H 1.09003 * 109.46620 * 184.99847 * 4 2 1 6 6 O 1.42898 * 109.47177 * 305.00089 * 4 2 1 7 7 C 1.53003 * 109.47420 * 65.00185 * 4 2 1 8 8 C 1.52994 * 109.47436 * 174.99995 * 7 4 2 9 9 O 1.42895 * 109.47410 * 179.97438 * 8 7 4 10 10 C 1.35893 * 117.00423 * 179.97438 * 9 8 7 11 11 C 1.38828 * 120.01698 * 359.97438 * 10 9 8 12 12 C 1.38197 * 120.08074 * 180.02562 * 11 10 9 13 13 C 1.38159 * 120.12241 * 359.74570 * 12 11 10 14 14 C 1.38895 * 120.03923 * 0.50298 * 13 12 11 15 15 O 1.35750 * 120.04082 * 179.76935 * 14 13 12 16 16 C 1.34837 * 117.00113 * 174.18912 * 15 14 13 17 17 H 1.07997 * 119.99599 * 5.05344 * 16 15 14 18 18 C 1.38644 * 119.99958 * 185.05785 * 16 15 14 19 19 N 1.31560 * 120.00349 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00131 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46872 * 89.99682 * 20 18 16 22 22 H 1.48493 * 109.47580 * 210.00125 * 20 18 16 23 23 H 1.48505 * 109.46911 * 330.00443 * 20 18 16 24 24 C 1.38574 * 120.02538 * 179.97438 * 10 9 8 25 25 H 1.09002 * 109.46870 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46950 * 299.99127 * 1 2 3 27 27 H 1.08999 * 109.47363 * 59.99628 * 1 2 3 28 28 H 1.09003 * 109.46760 * 240.00393 * 2 1 3 29 29 H 1.09000 * 109.47224 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.47302 * 300.00410 * 3 2 1 31 31 H 1.08999 * 109.46491 * 60.00592 * 3 2 1 32 32 H 0.96696 * 114.00264 * 59.99967 * 6 4 2 33 33 H 1.08997 * 109.46831 * 54.99553 * 7 4 2 34 34 H 1.09000 * 109.46833 * 295.00321 * 7 4 2 35 35 H 1.09000 * 109.47187 * 59.99509 * 8 7 4 36 36 H 1.09002 * 109.46788 * 299.99523 * 8 7 4 37 37 H 1.07996 * 119.96124 * 0.04140 * 11 10 9 38 38 H 1.07994 * 119.93785 * 179.97438 * 12 11 10 39 39 H 1.07998 * 119.98058 * 180.27983 * 13 12 11 40 40 H 0.96997 * 119.99954 * 180.02562 * 19 18 16 41 41 H 1.08000 * 120.05694 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1264 -0.6444 1.2950 6 8 1.4702 -0.1190 2.4130 7 6 1.6353 -2.1956 1.1879 8 6 2.2503 -2.9430 2.3727 9 8 1.8719 -4.3198 2.3158 10 6 2.3385 -5.1293 3.3025 11 6 3.1451 -4.6081 4.3051 12 6 3.6208 -5.4302 5.3089 13 6 3.2910 -6.7718 5.3209 14 6 2.4887 -7.2996 4.3175 15 8 2.1685 -8.6188 4.3267 16 6 1.2906 -9.0422 3.3950 17 1 0.9388 -8.3601 2.6352 18 6 0.8394 -10.3531 3.4126 19 7 1.2675 -11.1838 4.3386 20 14 -0.3774 -10.9395 2.1223 21 1 0.3624 -11.4715 0.9498 22 1 -1.2306 -12.0104 2.6968 23 1 -1.2314 -9.8024 1.6943 24 6 2.0096 -6.4754 3.3087 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9562 0.8901 32 1 0.5042 -0.1510 2.4395 33 1 1.9949 -2.6326 0.2563 34 1 0.5492 -2.2763 1.2315 35 1 1.8907 -2.5059 3.3042 36 1 3.3365 -2.8623 2.3289 37 1 3.4009 -3.5589 4.3007 38 1 4.2484 -5.0225 6.0874 39 1 3.6604 -7.4113 6.1090 40 1 0.9522 -12.1010 4.3506 41 1 1.3826 -6.8826 2.5293 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882994306.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:02 Heat of formation + Delta-G solvation = -132.852553 kcal Electronic energy + Delta-G solvation = -21311.343427 eV Core-core repulsion = 17962.934026 eV Total energy + Delta-G solvation = -3348.409401 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.23643 -40.06642 -39.35373 -37.31200 -34.69401 -34.29885 -33.05029 -31.01524 -30.27662 -28.11322 -27.36077 -26.85879 -23.75031 -23.34504 -22.18734 -21.01467 -19.95655 -19.46633 -17.54329 -17.47460 -17.29148 -16.82937 -16.67879 -16.34927 -16.04509 -15.62348 -15.37721 -15.25930 -14.68974 -14.58531 -14.07641 -13.95945 -13.56146 -13.48040 -12.98501 -12.92808 -12.83298 -12.78252 -12.63300 -12.40171 -12.17093 -12.12140 -11.94894 -11.76079 -11.55765 -11.42487 -11.35723 -10.81313 -10.79268 -9.39904 -8.96787 -8.49885 -6.19208 0.56354 0.66429 1.33933 1.43334 1.51807 2.14577 2.20970 2.78899 3.12469 3.43970 3.50232 3.74704 3.84088 3.97089 4.03570 4.08686 4.17993 4.25879 4.36934 4.43108 4.45989 4.56757 4.62065 4.75215 4.79213 4.83243 4.97154 5.00082 5.01452 5.08507 5.09332 5.12207 5.22121 5.40814 5.43877 5.47079 5.60245 5.63794 5.93260 6.00269 6.56312 6.79009 6.94495 7.71613 8.72828 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.021517 B = 0.003300 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.962886 B = 8483.126238 C = 9612.899986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.124 4.124 3 C -0.142 4.142 4 C 0.121 3.879 5 H 0.102 0.898 6 O -0.571 6.571 7 C -0.146 4.146 8 C 0.057 3.943 9 O -0.334 6.334 10 C 0.168 3.832 11 C -0.275 4.275 12 C -0.028 4.028 13 C -0.237 4.237 14 C 0.150 3.850 15 O -0.222 6.222 16 C -0.417 4.417 17 H 0.098 0.902 18 C -0.019 4.019 19 N -0.917 5.917 20 Si 1.018 2.982 21 H -0.261 1.261 22 H -0.267 1.267 23 H -0.256 1.256 24 C -0.285 4.285 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.083 0.917 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.383 0.617 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.151 0.849 38 H 0.163 0.837 39 H 0.120 0.880 40 H 0.275 0.725 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.120 23.745 -8.234 25.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.143 4.143 3 C -0.199 4.199 4 C 0.062 3.938 5 H 0.120 0.880 6 O -0.380 6.380 7 C -0.184 4.184 8 C -0.017 4.017 9 O -0.249 6.249 10 C 0.122 3.878 11 C -0.294 4.294 12 C -0.046 4.046 13 C -0.256 4.256 14 C 0.099 3.901 15 O -0.128 6.128 16 C -0.493 4.493 17 H 0.115 0.885 18 C -0.217 4.217 19 N -0.555 5.555 20 Si 0.837 3.163 21 H -0.186 1.186 22 H -0.191 1.191 23 H -0.180 1.180 24 C -0.305 4.305 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.101 0.899 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.233 0.767 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.169 0.831 38 H 0.180 0.820 39 H 0.139 0.861 40 H 0.084 0.916 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 0.420 23.423 -8.053 24.773 hybrid contribution -0.936 -0.835 -0.476 1.341 sum -0.516 22.589 -8.529 24.151 Atomic orbital electron populations 1.21929 0.94513 1.02230 1.02825 1.21745 0.97017 0.97365 0.98131 1.21754 1.00983 0.95167 1.02043 1.21855 0.98601 0.88101 0.85232 0.87994 1.86553 1.26605 1.81493 1.43300 1.22323 1.02408 0.95896 0.97747 1.22949 1.00167 0.77788 1.00812 1.85983 1.70803 1.21606 1.46462 1.18678 0.92297 0.88980 0.87844 1.21166 1.07780 1.01634 0.98840 1.20937 0.95763 0.90795 0.97108 1.20466 1.07210 0.97173 1.00751 1.19571 0.93084 0.84022 0.93453 1.83964 1.56777 1.19456 1.52618 1.21802 1.22076 0.97146 1.08304 0.88511 1.26578 0.99937 0.94608 1.00550 1.70173 1.44289 1.06138 1.34865 0.84603 0.76760 0.78562 0.76380 1.18616 1.19150 1.17993 1.20317 1.12919 0.92802 1.04438 0.92414 0.91727 0.91741 0.89876 0.92672 0.92073 0.92564 0.76655 0.89786 0.90175 0.91206 0.91406 0.83118 0.81955 0.86146 0.91636 0.86589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 8.52 71.98 0.61 -1.02 16 2 C -0.12 -1.41 2.75 -10.79 -0.03 -1.44 16 3 C -0.14 -1.58 9.09 71.98 0.65 -0.92 16 4 C 0.12 1.71 2.72 30.59 0.08 1.79 16 5 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 6 O -0.57 -8.99 12.31 -148.98 -1.83 -10.83 16 7 C -0.15 -2.58 4.89 30.59 0.15 -2.43 16 8 C 0.06 1.36 4.64 71.98 0.33 1.70 16 9 O -0.33 -11.51 10.13 -92.35 -0.94 -12.45 16 10 C 0.17 6.63 6.68 22.49 0.15 6.78 16 11 C -0.28 -9.21 9.04 22.40 0.20 -9.00 16 12 C -0.03 -0.96 10.03 22.24 0.22 -0.74 16 13 C -0.24 -10.31 9.99 22.41 0.22 -10.09 16 14 C 0.15 7.82 6.65 22.56 0.15 7.97 16 15 O -0.22 -13.74 9.76 -22.81 -0.22 -13.96 16 16 C -0.42 -25.12 9.49 67.92 0.64 -24.48 16 17 H 0.10 5.49 5.20 -2.91 -0.02 5.48 16 18 C -0.02 -1.09 5.49 84.83 0.47 -0.62 16 19 N -0.92 -56.79 13.67 21.61 0.30 -56.49 16 20 Si 1.02 43.78 29.55 68.60 2.03 45.80 16 21 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 22 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 23 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 24 C -0.28 -13.69 9.10 22.49 0.20 -13.49 16 25 H 0.06 0.65 6.68 -2.39 -0.02 0.63 16 26 H 0.06 0.58 6.72 -2.39 -0.02 0.56 16 27 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.05 0.60 8.14 -2.39 -0.02 0.59 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.06 0.69 7.82 -2.39 -0.02 0.67 16 32 H 0.38 4.19 7.19 -74.06 -0.53 3.66 16 33 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.08 1.40 6.81 -2.39 -0.02 1.38 16 35 H 0.07 1.62 7.34 -2.39 -0.02 1.60 16 36 H 0.07 1.48 7.66 -2.39 -0.02 1.46 16 37 H 0.15 3.91 6.29 -2.91 -0.02 3.90 16 38 H 0.16 4.01 8.06 -2.91 -0.02 3.99 16 39 H 0.12 5.08 8.06 -2.91 -0.02 5.06 16 40 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 41 H 0.12 5.85 5.64 -2.91 -0.02 5.83 16 Total: -1.00 -73.19 336.46 3.90 -69.29 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: 0.50 Total: 24.63 kcal Atomic # 6 Polarization: -50.06 SS G_CDS: 4.07 Total: -45.99 kcal Atomic # 7 Polarization: -56.79 SS G_CDS: 0.30 Total: -56.49 kcal Atomic # 8 Polarization: -34.24 SS G_CDS: -2.99 Total: -37.24 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -73.19 3.90 -69.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882994306.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.567 kcal (2) G-P(sol) polarization free energy of solvation -73.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds