Wall clock time and date at job start Tue Mar 31 2020 01:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38114 * 120.38437 * 2 1 4 4 C 1.39614 * 118.39702 * 179.97438 * 3 2 1 5 5 N 1.38534 * 120.51958 * 180.02562 * 4 3 2 6 6 C 1.46957 * 110.99783 * 303.79684 * 5 4 3 7 7 C 1.53046 * 109.36587 * 176.80970 * 6 5 4 8 8 N 1.46963 * 109.36295 * 58.40046 * 7 6 5 9 9 C 1.46901 * 110.99812 * 176.81344 * 8 7 6 10 10 C 1.50695 * 109.47243 * 58.97702 * 9 8 7 11 11 H 1.07999 * 120.00072 * 5.00932 * 10 9 8 12 12 C 1.37884 * 119.99870 * 185.00932 * 10 9 8 13 13 N 1.31516 * 119.99788 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 119.99795 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47509 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47163 * 119.99938 * 14 12 10 17 17 H 1.48498 * 109.47099 * 239.99928 * 14 12 10 18 18 C 1.46952 * 110.87915 * 300.67762 * 8 7 6 19 19 C 1.46949 * 111.00225 * 179.97438 * 5 4 3 20 20 N 1.32985 * 118.96736 * 359.74599 * 4 3 2 21 21 C 1.31997 * 120.66122 * 0.50291 * 20 4 3 22 22 F 1.35095 * 119.12126 * 179.75842 * 21 20 4 23 23 N 1.32046 * 121.75942 * 359.49014 * 21 20 4 24 24 H 1.09007 * 109.47024 * 270.02711 * 1 2 3 25 25 H 1.09004 * 109.47162 * 30.01947 * 1 2 3 26 26 H 1.08999 * 109.47065 * 150.02457 * 1 2 3 27 27 H 1.08008 * 120.79869 * 0.02562 * 3 2 1 28 28 H 1.09004 * 109.48787 * 296.77860 * 6 5 4 29 29 H 1.08998 * 109.48958 * 56.84267 * 6 5 4 30 30 H 1.08996 * 109.49292 * 298.43459 * 7 6 5 31 31 H 1.08995 * 109.48897 * 178.36380 * 7 6 5 32 32 H 1.08994 * 109.46895 * 178.98053 * 9 8 7 33 33 H 1.09005 * 109.46807 * 298.97445 * 9 8 7 34 34 H 0.97005 * 119.99304 * 179.97438 * 13 12 10 35 35 H 1.08997 * 109.49522 * 299.35272 * 18 8 7 36 36 H 1.09004 * 109.48918 * 179.28430 * 18 8 7 37 37 H 1.09000 * 109.48976 * 303.15574 * 19 5 4 38 38 H 1.09000 * 109.49304 * 63.19776 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2055 1.1914 0.0000 4 6 3.6008 1.1430 0.0005 5 7 4.3453 2.3113 0.0011 6 6 3.9852 3.1658 -1.1390 7 6 4.7699 4.4773 -1.0581 8 7 6.2100 4.1841 -1.0575 9 6 6.9994 5.4230 -1.0570 10 6 6.6512 6.2399 0.1606 11 1 5.9784 5.8402 0.9047 12 6 7.1918 7.4978 0.3245 13 7 8.0116 7.9843 -0.5815 14 14 6.7608 8.5100 1.8340 15 1 5.8258 7.7419 2.6948 16 1 7.9987 8.8147 2.5957 17 1 6.1148 9.7786 1.4114 18 6 6.5701 3.3297 0.0826 19 6 5.7853 2.0182 0.0022 20 7 4.2042 -0.0421 0.0062 21 6 3.4977 -1.1571 0.0013 22 9 4.1428 -2.3441 0.0023 23 7 2.1773 -1.1433 0.0006 24 1 -0.3633 0.0005 1.0277 25 1 -0.3634 0.8898 -0.5142 26 1 -0.3633 -0.8902 -0.5134 27 1 1.6849 2.1378 0.0004 28 1 4.2291 2.6528 -2.0693 29 1 2.9167 3.3791 -1.1104 30 1 4.5056 5.0033 -0.1409 31 1 4.5261 5.1005 -1.9184 32 1 8.0611 5.1773 -1.0382 33 1 6.7751 5.9971 -1.9561 34 1 8.3916 8.8694 -0.4663 35 1 6.3262 3.8427 1.0129 36 1 7.6387 3.1164 0.0539 37 1 6.0289 1.3950 0.8627 38 1 6.0500 1.4916 -0.9147 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884574486.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:50 Heat of formation + Delta-G solvation = 30.755167 kcal Electronic energy + Delta-G solvation = -21804.839461 eV Core-core repulsion = 18404.649820 eV Total energy + Delta-G solvation = -3400.189641 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.25093 -41.38773 -38.92593 -35.90099 -34.15637 -32.65195 -31.55011 -30.73072 -28.94970 -27.63850 -25.29918 -24.32807 -22.81394 -22.66373 -21.59327 -19.50290 -18.30545 -17.95819 -16.77058 -16.54935 -16.35096 -15.52396 -14.96555 -14.84180 -14.53227 -14.38664 -14.21247 -14.03393 -13.71084 -13.43095 -13.24158 -12.72422 -12.64068 -12.19764 -12.02010 -11.38860 -11.23929 -11.10665 -10.92089 -10.84406 -10.66675 -10.56143 -10.25361 -9.94008 -9.83275 -9.64725 -9.53190 -8.54259 -8.50000 -7.32361 -6.09712 -4.19022 0.63402 0.80259 2.76993 3.22318 3.25824 3.31109 3.34393 3.49032 3.83877 4.35369 4.50024 4.75394 4.86325 4.92753 5.10095 5.19806 5.20583 5.22083 5.35746 5.39518 5.55266 5.59229 5.60983 5.83090 5.86251 6.06064 6.08332 6.43257 6.47086 6.60273 6.66861 6.92728 6.96443 7.16458 7.44625 7.67615 7.81813 7.90783 8.12744 8.20116 8.91019 9.48501 10.95654 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.028887 B = 0.003837 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.066308 B = 7295.237989 C = 7701.558544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.218 3.782 3 C -0.258 4.258 4 C 0.400 3.600 5 N -0.466 5.466 6 C 0.064 3.936 7 C 0.062 3.938 8 N -0.544 5.544 9 C 0.187 3.813 10 C -0.552 4.552 11 H 0.059 0.941 12 C 0.066 3.934 13 N -0.890 5.890 14 Si 0.889 3.111 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.283 1.283 18 C 0.059 3.941 19 C 0.067 3.933 20 N -0.580 5.580 21 C 0.525 3.475 22 F -0.082 7.082 23 N -0.567 5.567 24 H 0.089 0.911 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.157 0.843 28 H 0.055 0.945 29 H 0.083 0.917 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.030 0.970 33 H 0.036 0.964 34 H 0.262 0.738 35 H 0.050 0.950 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.403 -13.371 -0.125 18.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.075 3.925 3 C -0.284 4.284 4 C 0.160 3.840 5 N -0.182 5.182 6 C -0.061 4.061 7 C -0.067 4.067 8 N -0.268 5.268 9 C 0.062 3.938 10 C -0.591 4.591 11 H 0.077 0.923 12 C -0.137 4.137 13 N -0.528 5.528 14 Si 0.717 3.283 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.209 1.209 18 C -0.070 4.070 19 C -0.059 4.059 20 N -0.308 5.308 21 C 0.243 3.757 22 F -0.062 7.062 23 N -0.292 5.292 24 H 0.107 0.893 25 H 0.105 0.895 26 H 0.103 0.897 27 H 0.174 0.826 28 H 0.073 0.927 29 H 0.102 0.898 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.048 0.952 33 H 0.055 0.945 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.729 -14.007 -0.196 18.928 hybrid contribution -0.243 1.241 1.180 1.729 sum -12.972 -12.766 0.984 18.227 Atomic orbital electron populations 1.20809 0.86956 1.04374 1.04047 1.21268 0.97284 0.86176 0.87723 1.22205 0.93647 1.01127 1.11384 1.19977 0.90396 0.87378 0.86230 1.59048 1.08243 1.10259 1.40617 1.22557 1.00464 0.94274 0.88855 1.21982 0.89284 0.92927 1.02461 1.62746 1.03933 1.19872 1.40278 1.19754 0.92958 0.84330 0.96788 1.21771 1.28668 1.01242 1.07374 0.92277 1.24960 0.94797 0.97666 0.96282 1.69954 1.30858 1.17694 1.34309 0.86588 0.78332 0.80233 0.83174 1.19809 1.20921 1.20924 1.22054 0.98730 0.91591 0.94660 1.22288 0.82786 0.98330 1.02543 1.67712 1.41975 0.97893 1.23223 1.18665 0.84021 0.80923 0.92083 1.91709 1.80409 1.41391 1.92656 1.67614 1.07422 1.32156 1.22055 0.89271 0.89548 0.89696 0.82554 0.92704 0.89823 0.92621 0.90142 0.95232 0.94546 0.92797 0.93208 0.90407 0.89825 0.92288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.68 10.21 36.00 0.37 -0.31 16 2 C 0.22 2.35 6.81 -82.34 -0.56 1.79 16 3 C -0.26 -2.92 8.97 -39.11 -0.35 -3.27 16 4 C 0.40 5.69 6.41 -154.79 -0.99 4.70 16 5 N -0.47 -7.06 4.73 -172.88 -0.82 -7.88 16 6 C 0.06 0.90 5.37 -3.77 -0.02 0.88 16 7 C 0.06 1.11 5.24 -3.77 -0.02 1.09 16 8 N -0.54 -10.99 4.92 -235.92 -1.16 -12.15 16 9 C 0.19 4.59 5.14 -4.98 -0.03 4.57 16 10 C -0.55 -14.51 7.66 -34.44 -0.26 -14.78 16 11 H 0.06 1.55 5.82 -52.49 -0.31 1.25 16 12 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 13 N -0.89 -25.45 13.29 55.43 0.74 -24.71 16 14 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 15 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 C 0.06 1.10 5.32 -3.77 -0.02 1.08 16 19 C 0.07 1.08 4.80 -3.77 -0.02 1.06 16 20 N -0.58 -8.89 8.88 -14.17 -0.13 -9.01 16 21 C 0.52 7.66 9.46 -91.76 -0.87 6.79 16 22 F -0.08 -1.16 17.32 2.25 0.04 -1.12 16 23 N -0.57 -7.56 10.38 -11.23 -0.12 -7.68 16 24 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.09 0.39 8.09 -51.93 -0.42 -0.03 16 26 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.16 1.39 7.26 -52.48 -0.38 1.01 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.08 0.94 6.86 -51.93 -0.36 0.59 16 30 H 0.06 1.09 6.61 -51.93 -0.34 0.75 16 31 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.03 0.78 8.12 -51.93 -0.42 0.36 16 33 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.05 1.03 6.78 -51.93 -0.35 0.67 16 36 H 0.08 1.44 8.12 -51.93 -0.42 1.02 16 37 H 0.08 1.32 7.84 -51.93 -0.41 0.92 16 38 H 0.06 0.98 8.07 -51.93 -0.42 0.56 16 LS Contribution 313.83 15.07 4.73 4.73 Total: -1.00 -29.52 313.83 -9.68 -39.20 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: -5.08 Total: -2.49 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: -2.87 Total: 5.29 kcal Atomic # 7 Polarization: -59.95 SS G_CDS: -1.48 Total: -61.44 kcal Atomic # 9 Polarization: -1.16 SS G_CDS: 0.04 Total: -1.12 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.52 -9.68 -39.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884574486.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.953 kcal (2) G-P(sol) polarization free energy of solvation -29.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds