Wall clock time and date at job start Tue Mar 31 2020 01:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38114 * 120.38437 * 2 1 4 4 C 1.39614 * 118.39702 * 179.97438 * 3 2 1 5 5 N 1.38534 * 120.51958 * 180.02562 * 4 3 2 6 6 C 1.46957 * 110.99783 * 303.79684 * 5 4 3 7 7 C 1.53046 * 109.36587 * 176.80970 * 6 5 4 8 8 N 1.46963 * 109.36295 * 58.40046 * 7 6 5 9 9 C 1.46901 * 110.99812 * 176.81344 * 8 7 6 10 10 C 1.50695 * 109.47243 * 58.97702 * 9 8 7 11 11 H 1.07999 * 120.00072 * 5.00932 * 10 9 8 12 12 C 1.37884 * 119.99870 * 185.00932 * 10 9 8 13 13 N 1.31516 * 119.99788 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 119.99795 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47509 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47163 * 119.99938 * 14 12 10 17 17 H 1.48498 * 109.47099 * 239.99928 * 14 12 10 18 18 C 1.46952 * 110.87915 * 300.67762 * 8 7 6 19 19 C 1.46949 * 111.00225 * 179.97438 * 5 4 3 20 20 N 1.32985 * 118.96736 * 359.74599 * 4 3 2 21 21 C 1.31997 * 120.66122 * 0.50291 * 20 4 3 22 22 F 1.35095 * 119.12126 * 179.75842 * 21 20 4 23 23 N 1.32046 * 121.75942 * 359.49014 * 21 20 4 24 24 H 1.09007 * 109.47024 * 270.02711 * 1 2 3 25 25 H 1.09004 * 109.47162 * 30.01947 * 1 2 3 26 26 H 1.08999 * 109.47065 * 150.02457 * 1 2 3 27 27 H 1.08008 * 120.79869 * 0.02562 * 3 2 1 28 28 H 1.09004 * 109.48787 * 296.77860 * 6 5 4 29 29 H 1.08998 * 109.48958 * 56.84267 * 6 5 4 30 30 H 1.08996 * 109.49292 * 298.43459 * 7 6 5 31 31 H 1.08995 * 109.48897 * 178.36380 * 7 6 5 32 32 H 1.08994 * 109.46895 * 178.98053 * 9 8 7 33 33 H 1.09005 * 109.46807 * 298.97445 * 9 8 7 34 34 H 0.97005 * 119.99304 * 179.97438 * 13 12 10 35 35 H 1.08997 * 109.49522 * 299.35272 * 18 8 7 36 36 H 1.09004 * 109.48918 * 179.28430 * 18 8 7 37 37 H 1.09000 * 109.48976 * 303.15574 * 19 5 4 38 38 H 1.09000 * 109.49304 * 63.19776 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2055 1.1914 0.0000 4 6 3.6008 1.1430 0.0005 5 7 4.3453 2.3113 0.0011 6 6 3.9852 3.1658 -1.1390 7 6 4.7699 4.4773 -1.0581 8 7 6.2100 4.1841 -1.0575 9 6 6.9994 5.4230 -1.0570 10 6 6.6512 6.2399 0.1606 11 1 5.9784 5.8402 0.9047 12 6 7.1918 7.4978 0.3245 13 7 8.0116 7.9843 -0.5815 14 14 6.7608 8.5100 1.8340 15 1 5.8258 7.7419 2.6948 16 1 7.9987 8.8147 2.5957 17 1 6.1148 9.7786 1.4114 18 6 6.5701 3.3297 0.0826 19 6 5.7853 2.0182 0.0022 20 7 4.2042 -0.0421 0.0062 21 6 3.4977 -1.1571 0.0013 22 9 4.1428 -2.3441 0.0023 23 7 2.1773 -1.1433 0.0006 24 1 -0.3633 0.0005 1.0277 25 1 -0.3634 0.8898 -0.5142 26 1 -0.3633 -0.8902 -0.5134 27 1 1.6849 2.1378 0.0004 28 1 4.2291 2.6528 -2.0693 29 1 2.9167 3.3791 -1.1104 30 1 4.5056 5.0033 -0.1409 31 1 4.5261 5.1005 -1.9184 32 1 8.0611 5.1773 -1.0382 33 1 6.7751 5.9971 -1.9561 34 1 8.3916 8.8694 -0.4663 35 1 6.3262 3.8427 1.0129 36 1 7.6387 3.1164 0.0539 37 1 6.0289 1.3950 0.8627 38 1 6.0500 1.4916 -0.9147 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884574486.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:50 Heat of formation + Delta-G solvation = 10.884542 kcal Electronic energy + Delta-G solvation = -21805.701116 eV Core-core repulsion = 18404.649820 eV Total energy + Delta-G solvation = -3401.051296 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.31159 -42.41771 -40.22755 -37.33171 -35.24789 -34.47784 -32.73429 -32.04559 -30.06828 -28.99565 -26.97619 -25.48286 -24.17279 -23.97903 -22.97614 -20.96925 -19.45141 -18.97874 -18.44896 -17.77645 -17.58640 -16.73626 -16.51697 -16.08723 -15.93068 -15.75611 -15.44506 -15.08767 -14.97993 -14.81896 -14.33546 -13.90749 -13.65954 -13.56526 -13.14129 -12.98450 -12.83994 -12.53891 -12.40245 -12.34043 -12.25513 -11.93668 -11.77156 -11.74457 -11.53422 -10.81884 -10.60877 -10.55830 -9.64061 -9.08168 -8.15875 -6.34701 -0.34974 -0.15759 1.36961 1.39463 1.50288 1.75277 2.23351 2.37981 2.47199 2.91005 3.10113 3.28813 3.54499 3.85112 3.93990 4.06644 4.09052 4.22873 4.34859 4.39714 4.49496 4.58144 4.73882 4.78065 4.82266 4.84639 4.99505 5.02317 5.15052 5.19935 5.31024 5.33730 5.37937 5.72761 5.80842 5.93473 6.01381 6.21455 6.44025 6.67181 6.85330 7.37088 8.87285 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.028887 B = 0.003837 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.066308 B = 7295.237989 C = 7701.558544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.219 3.781 3 C -0.244 4.244 4 C 0.381 3.619 5 N -0.474 5.474 6 C 0.074 3.926 7 C 0.063 3.937 8 N -0.545 5.545 9 C 0.200 3.800 10 C -0.554 4.554 11 H 0.058 0.942 12 C 0.014 3.986 13 N -0.926 5.926 14 Si 0.956 3.044 15 H -0.267 1.267 16 H -0.281 1.281 17 H -0.277 1.277 18 C 0.064 3.936 19 C 0.083 3.917 20 N -0.603 5.603 21 C 0.509 3.491 22 F -0.088 7.088 23 N -0.575 5.575 24 H 0.105 0.895 25 H 0.114 0.886 26 H 0.087 0.913 27 H 0.188 0.812 28 H 0.056 0.944 29 H 0.123 0.877 30 H 0.037 0.963 31 H 0.082 0.918 32 H 0.003 0.997 33 H 0.013 0.987 34 H 0.265 0.735 35 H 0.030 0.970 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.316 -13.599 0.561 21.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.077 3.923 3 C -0.269 4.269 4 C 0.142 3.858 5 N -0.190 5.190 6 C -0.051 4.051 7 C -0.066 4.066 8 N -0.269 5.269 9 C 0.074 3.926 10 C -0.593 4.593 11 H 0.076 0.924 12 C -0.186 4.186 13 N -0.566 5.566 14 Si 0.782 3.218 15 H -0.192 1.192 16 H -0.207 1.207 17 H -0.202 1.202 18 C -0.064 4.064 19 C -0.044 4.044 20 N -0.332 5.332 21 C 0.227 3.773 22 F -0.067 7.067 23 N -0.300 5.300 24 H 0.123 0.877 25 H 0.132 0.868 26 H 0.106 0.894 27 H 0.205 0.795 28 H 0.074 0.926 29 H 0.141 0.859 30 H 0.055 0.945 31 H 0.100 0.900 32 H 0.021 0.979 33 H 0.031 0.969 34 H 0.074 0.926 35 H 0.048 0.952 36 H 0.090 0.910 37 H 0.104 0.896 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.668 -14.256 0.491 21.189 hybrid contribution 0.603 1.243 0.937 1.669 sum -15.065 -13.014 1.428 19.958 Atomic orbital electron populations 1.20998 0.83477 1.05939 1.05447 1.22061 0.99216 0.85190 0.85854 1.22537 0.92222 1.02705 1.09412 1.20107 0.91499 0.86544 0.87622 1.59093 1.07339 1.11198 1.41360 1.22505 1.01882 0.91988 0.88730 1.22011 0.87779 0.95214 1.01562 1.62658 1.05314 1.17885 1.41034 1.19403 0.92147 0.85752 0.95303 1.21982 1.28201 1.01482 1.07639 0.92362 1.25779 0.94717 0.98954 0.99131 1.70069 1.32036 1.18236 1.36224 0.85535 0.78080 0.78665 0.79562 1.19159 1.20739 1.20241 1.21990 0.99064 0.92404 0.92990 1.21989 0.83779 0.96241 1.02350 1.67581 1.43060 0.98569 1.23950 1.18778 0.84588 0.80725 0.93176 1.91685 1.80654 1.41575 1.92811 1.67734 1.06732 1.33547 1.21984 0.87671 0.86762 0.89380 0.79465 0.92610 0.85914 0.94482 0.89960 0.97900 0.96863 0.92620 0.95218 0.90998 0.89621 0.92799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.86 10.21 71.23 0.73 -0.14 16 2 C 0.22 3.98 6.81 42.42 0.29 4.26 16 3 C -0.24 -4.62 8.97 22.57 0.20 -4.42 16 4 C 0.38 10.03 6.41 133.16 0.85 10.89 16 5 N -0.47 -13.59 4.73 -700.86 -3.32 -16.91 16 6 C 0.07 1.92 5.37 86.31 0.46 2.39 16 7 C 0.06 2.19 5.24 86.31 0.45 2.64 16 8 N -0.54 -22.42 4.92 -900.30 -4.43 -26.84 16 9 C 0.20 10.20 5.14 85.56 0.44 10.64 16 10 C -0.55 -29.64 7.66 25.60 0.20 -29.44 16 11 H 0.06 3.08 5.82 -2.91 -0.02 3.07 16 12 C 0.01 0.75 5.46 84.66 0.46 1.21 16 13 N -0.93 -53.90 13.29 21.45 0.28 -53.62 16 14 Si 0.96 42.87 29.54 68.60 2.03 44.89 16 15 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 16 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 17 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 18 C 0.06 2.45 5.32 86.31 0.46 2.91 16 19 C 0.08 2.67 4.80 86.31 0.41 3.09 16 20 N -0.60 -17.92 8.88 -198.74 -1.77 -19.68 16 21 C 0.51 14.41 9.46 180.75 1.71 16.12 16 22 F -0.09 -2.47 17.32 44.97 0.78 -1.69 16 23 N -0.57 -14.17 10.38 -189.45 -1.97 -16.14 16 24 H 0.11 0.65 8.14 -2.38 -0.02 0.63 16 25 H 0.11 0.39 8.09 -2.38 -0.02 0.37 16 26 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.19 2.31 7.26 -2.91 -0.02 2.29 16 28 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.12 2.25 6.86 -2.39 -0.02 2.24 16 30 H 0.04 1.43 6.61 -2.39 -0.02 1.42 16 31 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 32 H 0.00 0.16 8.12 -2.39 -0.02 0.14 16 33 H 0.01 0.73 8.14 -2.38 -0.02 0.71 16 34 H 0.26 14.52 8.31 -92.70 -0.77 13.75 16 35 H 0.03 1.25 6.78 -2.39 -0.02 1.23 16 36 H 0.07 2.76 8.12 -2.38 -0.02 2.74 16 37 H 0.09 2.71 7.84 -2.39 -0.02 2.69 16 38 H 0.05 1.78 8.07 -2.39 -0.02 1.76 16 Total: -1.00 -65.21 313.83 -0.65 -65.86 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: 1.07 Total: 3.97 kcal Atomic # 6 Polarization: 13.49 SS G_CDS: 6.67 Total: 20.16 kcal Atomic # 7 Polarization: -122.00 SS G_CDS: -11.19 Total: -133.19 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.78 Total: -1.69 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Total: -65.21 -0.65 -65.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884574486.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.743 kcal (2) G-P(sol) polarization free energy of solvation -65.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds