Wall clock time and date at job start Tue Mar 31 2020 01:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00174 * 2 1 4 4 H 1.48501 * 109.46863 * 239.99762 * 3 2 1 5 5 H 1.48500 * 109.47325 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46840 * 120.00481 * 3 2 1 7 7 C 1.37884 * 119.99489 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99592 * 173.70641 * 7 2 1 9 9 C 1.50700 * 119.99771 * 353.70600 * 7 2 1 10 10 C 1.52991 * 115.55101 * 86.11566 * 9 7 2 11 11 O 1.45200 * 109.47759 * 65.10111 * 10 9 7 12 12 C 1.34228 * 117.00454 * 180.02562 * 11 10 9 13 13 O 1.20822 * 120.00019 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99804 * 179.97438 * 12 11 10 15 15 H 1.08998 * 109.69749 * 304.43295 * 14 12 11 16 16 O 1.42822 * 109.69708 * 183.94276 * 14 12 11 17 17 C 1.42883 * 110.66302 * 242.28106 * 16 14 12 18 18 C 1.54113 * 107.22067 * 341.92383 * 17 16 14 19 19 H 1.08997 * 112.58270 * 264.48891 * 18 17 16 20 20 C 1.53868 * 109.34559 * 138.67685 * 18 17 16 21 21 C 1.54198 * 106.79925 * 249.61295 * 20 18 17 22 22 C 1.55822 * 103.99078 * 24.08805 * 21 20 18 23 23 C 1.53548 * 109.70179 * 65.00156 * 14 12 11 24 24 H 1.09001 * 112.67722 * 256.71716 * 23 14 12 25 25 C 1.53005 * 117.49615 * 231.78039 * 9 7 2 26 26 C 1.52995 * 117.49861 * 300.43759 * 9 7 2 27 27 H 0.97003 * 119.99483 * 359.97438 * 1 2 3 28 28 H 1.09006 * 109.47053 * 185.10237 * 10 9 7 29 29 H 1.08997 * 109.47109 * 305.09697 * 10 9 7 30 30 H 1.08999 * 109.89072 * 222.51839 * 17 16 14 31 31 H 1.09008 * 109.88839 * 101.32386 * 17 16 14 32 32 H 1.09000 * 109.99284 * 8.94591 * 20 18 17 33 33 H 1.08995 * 109.99424 * 130.23395 * 20 18 17 34 34 H 1.08996 * 110.48715 * 142.35036 * 21 20 18 35 35 H 1.09006 * 110.48011 * 264.99043 * 21 20 18 36 36 H 1.09004 * 110.33276 * 203.24546 * 22 21 20 37 37 H 1.09000 * 111.56576 * 79.63208 * 22 21 20 38 38 H 1.08992 * 117.50112 * 215.00935 * 25 9 7 39 39 H 1.09005 * 117.49409 * 0.02700 * 25 9 7 40 40 H 1.09001 * 117.50343 * 359.97438 * 26 9 7 41 41 H 1.09004 * 117.49777 * 145.00387 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0795 -1.1970 -0.1031 9 6 1.2576 -2.4953 0.1420 10 6 0.7191 -3.0930 -1.1593 11 8 1.8299 -3.4642 -2.0177 12 6 1.5260 -4.0070 -3.2072 13 8 0.3702 -4.1671 -3.5206 14 6 2.6266 -4.4166 -4.1516 15 1 3.2789 -3.5655 -4.3468 16 8 2.0606 -4.8791 -5.3787 17 6 2.3929 -6.2507 -5.6019 18 6 3.5923 -6.5833 -4.6931 19 1 4.5473 -6.4930 -5.2107 20 6 3.3895 -7.9758 -4.0707 21 6 3.1242 -7.7576 -2.5674 22 6 2.5721 -6.3026 -2.4896 23 6 3.4408 -5.5616 -3.5322 24 1 4.3989 -5.2282 -3.1335 25 6 1.7337 -3.4684 1.2224 26 6 0.4251 -2.6968 1.4096 27 1 -0.4849 0.8401 0.0004 28 1 0.1230 -3.9773 -0.9337 29 1 0.0975 -2.3560 -1.6678 30 1 2.6660 -6.4009 -6.6463 31 1 1.5446 -6.8846 -5.3432 32 1 2.5343 -8.4694 -4.5323 33 1 4.2866 -8.5795 -4.2077 34 1 2.3772 -8.4640 -2.2055 35 1 4.0492 -7.8544 -1.9989 36 1 2.7298 -5.8905 -1.4929 37 1 1.5182 -6.2587 -2.7642 38 1 1.6633 -4.5343 1.0062 39 1 2.5868 -3.1672 1.8304 40 1 0.4178 -1.8884 2.1408 41 1 -0.5064 -3.2552 1.3165 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885272503.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:06 Heat of formation + Delta-G solvation = -114.030072 kcal Electronic energy + Delta-G solvation = -22989.470165 eV Core-core repulsion = 19641.876968 eV Total energy + Delta-G solvation = -3347.593197 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.03610 -39.05973 -36.74852 -36.02671 -35.08253 -31.96030 -31.30693 -29.59431 -27.22912 -26.44267 -25.26347 -23.56047 -21.35870 -21.16955 -20.06061 -19.80819 -19.25456 -17.35521 -16.86506 -16.51094 -16.04191 -15.47684 -15.14217 -14.68311 -14.54017 -14.26435 -14.00502 -13.71732 -13.14290 -12.98173 -12.62084 -12.10829 -12.01237 -11.64536 -11.49192 -11.24749 -11.15843 -10.96881 -10.95743 -10.87687 -10.77659 -10.59424 -10.54747 -10.29825 -10.15525 -9.82521 -9.69125 -9.29282 -8.83433 -8.46462 -8.21148 -6.06788 -4.12304 2.74267 3.08737 3.30712 3.35656 3.37809 3.84208 4.02919 4.39008 4.41466 4.63437 4.90307 5.00614 5.07250 5.10228 5.22296 5.23890 5.26518 5.30683 5.44739 5.50743 5.62425 5.62631 5.70521 5.83046 5.88953 5.98222 6.06097 6.13541 6.20982 6.23769 6.33019 6.52870 6.63264 6.71364 6.90626 7.02236 7.26805 7.35714 7.47340 7.86255 8.36247 8.48400 8.89095 9.53622 11.02591 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.023551 B = 0.004896 C = 0.004548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.618821 B = 5717.272454 C = 6154.605051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.069 3.931 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.491 4.491 8 H 0.063 0.937 9 C 0.039 3.961 10 C 0.117 3.883 11 O -0.335 6.335 12 C 0.445 3.555 13 O -0.510 6.510 14 C 0.096 3.904 15 H 0.117 0.883 16 O -0.349 6.349 17 C 0.055 3.945 18 C -0.124 4.124 19 H 0.097 0.903 20 C -0.116 4.116 21 C -0.121 4.121 22 C -0.132 4.132 23 C -0.105 4.105 24 H 0.114 0.886 25 C -0.205 4.205 26 C -0.145 4.145 27 H 0.262 0.738 28 H 0.037 0.963 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.674 -14.298 -6.967 17.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.134 4.134 3 Si 0.720 3.280 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.528 4.528 8 H 0.081 0.919 9 C 0.038 3.962 10 C 0.044 3.956 11 O -0.250 6.250 12 C 0.287 3.713 13 O -0.399 6.399 14 C 0.036 3.964 15 H 0.134 0.866 16 O -0.268 6.268 17 C -0.021 4.021 18 C -0.143 4.143 19 H 0.115 0.885 20 C -0.154 4.154 21 C -0.158 4.158 22 C -0.169 4.169 23 C -0.123 4.123 24 H 0.132 0.868 25 C -0.242 4.242 26 C -0.182 4.182 27 H 0.072 0.928 28 H 0.055 0.945 29 H 0.093 0.907 30 H 0.103 0.897 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.002 -14.075 -7.155 17.272 hybrid contribution 0.207 0.891 0.099 0.920 sum 7.209 -13.184 -7.055 16.601 Atomic orbital electron populations 1.69993 1.05928 1.26843 1.48999 1.25018 0.94848 0.99092 0.94472 0.86648 0.79651 0.82928 0.78745 1.20117 1.21274 1.20135 1.20338 0.93047 0.88324 1.51135 0.91910 1.18760 0.98904 0.94167 0.84324 1.22889 0.85482 0.96808 0.90453 1.86511 1.41372 1.70775 1.26361 1.23716 0.90195 0.74902 0.82479 1.90622 1.21845 1.51565 1.75853 1.22033 0.91058 0.99194 0.84065 0.86571 1.88273 1.76027 1.26118 1.36339 1.23374 0.95990 0.83057 0.99694 1.23231 0.99420 0.95761 0.95859 0.88515 1.22163 1.01858 0.95327 0.96010 1.22515 1.01055 0.96521 0.95729 1.22903 0.99073 0.95067 0.99849 1.23175 0.99761 0.93054 0.96352 0.86820 1.23003 0.98553 0.95634 1.07024 1.22533 0.92274 1.01213 1.02218 0.92828 0.94480 0.90732 0.89749 0.91849 0.91291 0.91418 0.91459 0.91077 0.89726 0.90882 0.91624 0.90090 0.89412 0.91691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.98 12.88 55.43 0.71 -24.26 16 2 C 0.07 1.88 5.38 -17.82 -0.10 1.79 16 3 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.49 -13.31 8.78 -34.44 -0.30 -13.61 16 8 H 0.06 1.70 7.82 -52.49 -0.41 1.29 16 9 C 0.04 0.96 1.62 -155.67 -0.25 0.71 16 10 C 0.12 2.79 5.29 37.15 0.20 2.99 16 11 O -0.33 -7.29 9.71 -39.25 -0.38 -7.67 16 12 C 0.45 8.92 5.01 36.01 0.18 9.10 16 13 O -0.51 -11.76 16.08 -25.43 -0.41 -12.17 16 14 C 0.10 1.48 3.98 -27.60 -0.11 1.37 16 15 H 0.12 1.63 8.14 -51.93 -0.42 1.21 16 16 O -0.35 -5.54 10.47 -55.04 -0.58 -6.11 16 17 C 0.06 0.64 7.16 37.74 0.27 0.91 16 18 C -0.12 -1.20 4.02 -88.32 -0.36 -1.55 16 19 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 20 C -0.12 -0.98 6.35 -25.65 -0.16 -1.15 16 21 C -0.12 -1.18 6.86 -24.60 -0.17 -1.35 16 22 C -0.13 -1.72 4.96 -24.37 -0.12 -1.84 16 23 C -0.10 -1.27 3.81 -88.22 -0.34 -1.60 16 24 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 25 C -0.20 -4.38 9.96 -26.69 -0.27 -4.65 16 26 C -0.14 -3.35 9.37 -26.70 -0.25 -3.60 16 27 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.04 0.84 8.09 -51.93 -0.42 0.42 16 29 H 0.07 2.00 8.13 -51.93 -0.42 1.58 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.75 7.30 -51.92 -0.38 0.37 16 32 H 0.07 0.56 7.24 -51.93 -0.38 0.19 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 1.20 7.96 -51.93 -0.41 0.78 16 37 H 0.07 1.14 6.65 -51.93 -0.35 0.79 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 40 H 0.09 2.14 8.14 -51.93 -0.42 1.71 16 41 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 333.61 15.07 5.03 5.03 Total: -1.00 -30.91 333.61 -8.97 -39.88 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -6.55 Total: 1.74 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -1.77 Total: -12.48 kcal Atomic # 7 Polarization: -24.98 SS G_CDS: 0.71 Total: -24.26 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -1.37 Total: -25.95 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.91 -8.97 -39.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885272503.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.150 kcal (2) G-P(sol) polarization free energy of solvation -30.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds