Wall clock time and date at job start Tue Mar 31 2020 01:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00174 * 2 1 4 4 H 1.48501 * 109.46863 * 239.99762 * 3 2 1 5 5 H 1.48500 * 109.47325 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46840 * 120.00481 * 3 2 1 7 7 C 1.37884 * 119.99489 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99592 * 173.70641 * 7 2 1 9 9 C 1.50700 * 119.99771 * 353.70600 * 7 2 1 10 10 C 1.52991 * 115.55101 * 86.11566 * 9 7 2 11 11 O 1.45200 * 109.47759 * 65.10111 * 10 9 7 12 12 C 1.34228 * 117.00454 * 180.02562 * 11 10 9 13 13 O 1.20822 * 120.00019 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99804 * 179.97438 * 12 11 10 15 15 H 1.08998 * 109.69749 * 304.43295 * 14 12 11 16 16 O 1.42822 * 109.69708 * 183.94276 * 14 12 11 17 17 C 1.42883 * 110.66302 * 242.28106 * 16 14 12 18 18 C 1.54113 * 107.22067 * 341.92383 * 17 16 14 19 19 H 1.08997 * 112.58270 * 264.48891 * 18 17 16 20 20 C 1.53868 * 109.34559 * 138.67685 * 18 17 16 21 21 C 1.54198 * 106.79925 * 249.61295 * 20 18 17 22 22 C 1.55822 * 103.99078 * 24.08805 * 21 20 18 23 23 C 1.53548 * 109.70179 * 65.00156 * 14 12 11 24 24 H 1.09001 * 112.67722 * 256.71716 * 23 14 12 25 25 C 1.53005 * 117.49615 * 231.78039 * 9 7 2 26 26 C 1.52995 * 117.49861 * 300.43759 * 9 7 2 27 27 H 0.97003 * 119.99483 * 359.97438 * 1 2 3 28 28 H 1.09006 * 109.47053 * 185.10237 * 10 9 7 29 29 H 1.08997 * 109.47109 * 305.09697 * 10 9 7 30 30 H 1.08999 * 109.89072 * 222.51839 * 17 16 14 31 31 H 1.09008 * 109.88839 * 101.32386 * 17 16 14 32 32 H 1.09000 * 109.99284 * 8.94591 * 20 18 17 33 33 H 1.08995 * 109.99424 * 130.23395 * 20 18 17 34 34 H 1.08996 * 110.48715 * 142.35036 * 21 20 18 35 35 H 1.09006 * 110.48011 * 264.99043 * 21 20 18 36 36 H 1.09004 * 110.33276 * 203.24546 * 22 21 20 37 37 H 1.09000 * 111.56576 * 79.63208 * 22 21 20 38 38 H 1.08992 * 117.50112 * 215.00935 * 25 9 7 39 39 H 1.09005 * 117.49409 * 0.02700 * 25 9 7 40 40 H 1.09001 * 117.50343 * 359.97438 * 26 9 7 41 41 H 1.09004 * 117.49777 * 145.00387 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0795 -1.1970 -0.1031 9 6 1.2576 -2.4953 0.1420 10 6 0.7191 -3.0930 -1.1593 11 8 1.8299 -3.4642 -2.0177 12 6 1.5260 -4.0070 -3.2072 13 8 0.3702 -4.1671 -3.5206 14 6 2.6266 -4.4166 -4.1516 15 1 3.2789 -3.5655 -4.3468 16 8 2.0606 -4.8791 -5.3787 17 6 2.3929 -6.2507 -5.6019 18 6 3.5923 -6.5833 -4.6931 19 1 4.5473 -6.4930 -5.2107 20 6 3.3895 -7.9758 -4.0707 21 6 3.1242 -7.7576 -2.5674 22 6 2.5721 -6.3026 -2.4896 23 6 3.4408 -5.5616 -3.5322 24 1 4.3989 -5.2282 -3.1335 25 6 1.7337 -3.4684 1.2224 26 6 0.4251 -2.6968 1.4096 27 1 -0.4849 0.8401 0.0004 28 1 0.1230 -3.9773 -0.9337 29 1 0.0975 -2.3560 -1.6678 30 1 2.6660 -6.4009 -6.6463 31 1 1.5446 -6.8846 -5.3432 32 1 2.5343 -8.4694 -4.5323 33 1 4.2866 -8.5795 -4.2077 34 1 2.3772 -8.4640 -2.2055 35 1 4.0492 -7.8544 -1.9989 36 1 2.7298 -5.8905 -1.4929 37 1 1.5182 -6.2587 -2.7642 38 1 1.6633 -4.5343 1.0062 39 1 2.5868 -3.1672 1.8304 40 1 0.4178 -1.8884 2.1408 41 1 -0.5064 -3.2552 1.3165 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885272503.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:05 Heat of formation + Delta-G solvation = -130.569813 kcal Electronic energy + Delta-G solvation = -22990.187382 eV Core-core repulsion = 19641.876968 eV Total energy + Delta-G solvation = -3348.310414 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.26934 -40.53384 -38.54435 -37.20301 -36.70165 -34.03167 -32.38059 -30.49120 -28.83016 -27.72622 -27.19239 -24.77935 -23.00317 -22.34488 -21.21462 -21.17151 -20.90227 -18.72089 -18.36566 -18.10678 -17.37192 -17.19417 -16.62629 -16.37070 -15.74883 -15.56711 -15.22529 -14.98589 -14.61602 -14.32839 -13.89854 -13.76586 -13.58740 -13.23257 -12.93151 -12.80832 -12.62039 -12.41411 -12.14183 -12.09645 -11.98119 -11.93054 -11.75850 -11.63587 -11.60193 -11.41060 -11.29440 -10.79902 -10.66935 -10.48065 -10.08276 -8.14629 -6.26247 1.16458 1.42685 1.43413 1.51269 1.59096 2.41928 2.78348 3.11736 3.14584 3.34884 3.56941 3.61745 3.83986 4.02232 4.08856 4.11559 4.26152 4.33814 4.36347 4.42655 4.44254 4.47971 4.62061 4.63968 4.68009 4.76838 4.80845 4.92297 4.95872 5.05164 5.14586 5.16350 5.20295 5.28233 5.42956 5.43897 5.56659 5.65560 5.73784 5.83904 6.34327 6.79213 6.80765 7.42851 8.94228 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.023551 B = 0.004896 C = 0.004548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.618821 B = 5717.272454 C = 6154.605051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.021 3.979 3 Si 0.953 3.047 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.504 4.504 8 H 0.059 0.941 9 C 0.005 3.995 10 C 0.131 3.869 11 O -0.337 6.337 12 C 0.442 3.558 13 O -0.549 6.549 14 C 0.097 3.903 15 H 0.133 0.867 16 O -0.376 6.376 17 C 0.043 3.957 18 C -0.109 4.109 19 H 0.128 0.872 20 C -0.112 4.112 21 C -0.115 4.115 22 C -0.137 4.137 23 C -0.103 4.103 24 H 0.137 0.863 25 C -0.172 4.172 26 C -0.149 4.149 27 H 0.261 0.739 28 H 0.043 0.957 29 H 0.033 0.967 30 H 0.112 0.888 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.038 0.962 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.070 0.930 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.430 -15.811 -7.472 20.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.179 4.179 3 Si 0.779 3.221 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.542 4.542 8 H 0.077 0.923 9 C 0.005 3.995 10 C 0.057 3.943 11 O -0.252 6.252 12 C 0.286 3.714 13 O -0.440 6.440 14 C 0.038 3.962 15 H 0.150 0.850 16 O -0.295 6.295 17 C -0.032 4.032 18 C -0.128 4.128 19 H 0.146 0.854 20 C -0.150 4.150 21 C -0.152 4.152 22 C -0.175 4.175 23 C -0.121 4.121 24 H 0.155 0.845 25 C -0.209 4.209 26 C -0.186 4.186 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.051 0.949 30 H 0.130 0.870 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.114 0.886 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.086 0.914 37 H 0.057 0.943 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.089 0.911 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 9.780 -15.607 -7.661 19.948 hybrid contribution -0.701 1.309 0.213 1.500 sum 9.079 -14.298 -7.448 18.502 Atomic orbital electron populations 1.70116 1.07293 1.27390 1.50157 1.25763 0.95581 1.02313 0.94239 0.85684 0.78457 0.78933 0.79054 1.19726 1.21230 1.19057 1.20621 0.93049 0.89678 1.50813 0.92321 1.18847 1.00628 0.94880 0.85164 1.22475 0.85690 0.95797 0.90321 1.86519 1.40416 1.71108 1.27206 1.24884 0.91153 0.73300 0.82055 1.90590 1.23892 1.53128 1.76400 1.22274 0.89392 1.01270 0.83282 0.84954 1.88255 1.76694 1.28522 1.36011 1.23692 0.96725 0.80906 1.01880 1.23275 0.99778 0.95376 0.94335 0.85404 1.22181 1.03279 0.94927 0.94577 1.22517 1.01569 0.93864 0.97244 1.22853 0.97496 0.97953 0.99200 1.23318 0.99628 0.92231 0.96910 0.84532 1.23005 0.97480 0.96314 1.04104 1.22472 0.93698 1.01396 1.01042 0.93047 0.93878 0.94856 0.87018 0.92905 0.91197 0.88614 0.91401 0.89396 0.91353 0.94329 0.89097 0.89316 0.91105 0.90742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.05 12.88 21.45 0.28 -52.77 16 2 C 0.02 1.17 5.38 84.66 0.46 1.63 16 3 Si 0.95 43.48 29.54 68.60 2.03 45.50 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 5 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.50 -27.60 8.78 25.60 0.22 -27.38 16 8 H 0.06 3.17 7.82 -2.91 -0.02 3.15 16 9 C 0.01 0.26 1.62 -52.93 -0.09 0.18 16 10 C 0.13 6.49 5.29 71.98 0.38 6.87 16 11 O -0.34 -15.03 9.71 -51.40 -0.50 -15.53 16 12 C 0.44 18.21 5.01 71.24 0.36 18.56 16 13 O -0.55 -26.58 16.08 28.37 0.46 -26.12 16 14 C 0.10 2.94 3.98 30.03 0.12 3.06 16 15 H 0.13 3.55 8.14 -2.39 -0.02 3.53 16 16 O -0.38 -11.70 10.47 -130.04 -1.36 -13.06 16 17 C 0.04 0.92 7.16 72.36 0.52 1.44 16 18 C -0.11 -1.72 4.02 -9.30 -0.04 -1.76 16 19 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 20 C -0.11 -1.49 6.35 31.29 0.20 -1.29 16 21 C -0.11 -1.93 6.86 31.98 0.22 -1.72 16 22 C -0.14 -3.47 4.96 32.12 0.16 -3.31 16 23 C -0.10 -2.25 3.81 -9.24 -0.04 -2.29 16 24 H 0.14 2.41 8.14 -2.39 -0.02 2.39 16 25 C -0.17 -7.16 9.96 30.62 0.30 -6.85 16 26 C -0.15 -6.91 9.37 30.62 0.29 -6.63 16 27 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 28 H 0.04 2.03 8.09 -2.38 -0.02 2.01 16 29 H 0.03 1.89 8.13 -2.39 -0.02 1.87 16 30 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.05 1.21 7.30 -2.38 -0.02 1.19 16 32 H 0.07 0.94 7.24 -2.39 -0.02 0.92 16 33 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 36 H 0.07 1.90 7.96 -2.39 -0.02 1.89 16 37 H 0.04 1.23 6.65 -2.39 -0.02 1.21 16 38 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 39 H 0.09 3.55 8.14 -2.38 -0.02 3.53 16 40 H 0.07 3.50 8.14 -2.39 -0.02 3.48 16 41 H 0.07 3.26 8.14 -2.39 -0.02 3.24 16 Total: -1.00 -69.41 333.61 4.97 -64.44 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: 1.01 Total: 17.03 kcal Atomic # 6 Polarization: -22.55 SS G_CDS: 3.07 Total: -19.49 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: 0.28 Total: -52.77 kcal Atomic # 8 Polarization: -53.31 SS G_CDS: -1.40 Total: -54.71 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Total: -69.41 4.97 -64.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885272503.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.128 kcal (2) G-P(sol) polarization free energy of solvation -69.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds