Wall clock time and date at job start Tue Mar 31 2020 02:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86805 * 119.99905 * 2 1 4 4 H 1.48500 * 109.46817 * 269.99980 * 3 2 1 5 5 H 1.48501 * 109.46871 * 29.99804 * 3 2 1 6 6 H 1.48495 * 109.47197 * 149.99939 * 3 2 1 7 7 C 1.38946 * 120.00312 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99954 * 199.39997 * 7 2 1 9 9 N 1.37105 * 119.99896 * 19.40495 * 7 2 1 10 10 C 1.34767 * 120.00180 * 42.44193 * 9 7 2 11 11 O 1.21300 * 120.00381 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00131 * 180.02562 * 10 9 7 13 13 C 1.53002 * 109.47348 * 180.02562 * 12 10 9 14 14 H 1.09003 * 110.43496 * 303.91409 * 13 12 10 15 15 C 1.54629 * 110.60199 * 181.29909 * 13 12 10 16 16 C 1.54482 * 101.76426 * 216.47025 * 15 13 12 17 17 N 1.46768 * 105.47579 * 25.40805 * 16 15 13 18 18 C 1.34420 * 111.29791 * 342.98827 * 17 16 15 19 19 O 1.21281 * 124.93782 * 180.66627 * 18 17 16 20 20 C 1.46498 * 119.99665 * 222.44641 * 9 7 2 21 21 C 1.54269 * 110.03365 * 54.32370 * 20 9 7 22 22 C 1.54886 * 104.19457 * 217.10218 * 21 20 9 23 23 C 1.54886 * 102.75216 * 37.94404 * 22 21 20 24 24 C 1.53874 * 110.03576 * 297.15705 * 20 9 7 25 25 H 0.97000 * 120.00369 * 354.88670 * 1 2 3 26 26 H 1.09003 * 109.47099 * 60.00581 * 12 10 9 27 27 H 1.08999 * 109.47594 * 299.99914 * 12 10 9 28 28 H 1.09003 * 110.96418 * 334.58027 * 15 13 12 29 29 H 1.08996 * 110.97253 * 98.34755 * 15 13 12 30 30 H 1.08992 * 110.24880 * 144.41378 * 16 15 13 31 31 H 1.09006 * 110.24222 * 266.40991 * 16 15 13 32 32 H 0.96999 * 124.34652 * 162.98207 * 17 16 15 33 33 H 1.08997 * 110.01641 * 175.76329 * 20 9 7 34 34 H 1.08997 * 110.48576 * 335.78115 * 21 20 9 35 35 H 1.08999 * 110.48661 * 98.42801 * 21 20 9 36 36 H 1.08997 * 110.75906 * 279.62290 * 22 21 20 37 37 H 1.09003 * 110.91322 * 156.32844 * 22 21 20 38 38 H 1.08994 * 110.49368 * 203.38060 * 23 22 21 39 39 H 1.09004 * 110.48893 * 80.73219 * 23 22 21 40 40 H 1.09002 * 110.03201 * 238.57227 * 24 20 9 41 41 H 1.09006 * 110.02827 * 359.97438 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4403 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 3.0429 -1.2296 0.3112 9 7 1.3819 -2.3571 -0.3934 10 6 0.5755 -2.3509 -1.4733 11 8 0.4049 -1.3247 -2.0970 12 6 -0.1141 -3.6190 -1.9060 13 6 -0.9625 -3.3399 -3.1483 14 1 -1.6700 -2.5340 -2.9528 15 6 -1.7085 -4.6181 -3.5962 16 6 -1.6649 -4.4855 -5.1347 17 7 -0.4910 -3.6531 -5.4229 18 6 -0.0786 -2.9941 -4.3263 19 8 0.8622 -2.2296 -4.2881 20 6 1.5883 -3.5967 0.3595 21 6 1.2593 -3.3708 1.8497 22 6 2.3117 -4.2209 2.6040 23 6 3.5870 -4.0254 1.7471 24 6 3.0682 -4.0129 0.2943 25 1 -0.4851 0.8367 0.0749 26 1 -0.7556 -3.9768 -1.1005 27 1 0.6330 -4.3775 -2.1396 28 1 -1.1809 -5.5132 -3.2668 29 1 -2.7363 -4.6172 -3.2335 30 1 -1.5535 -5.4672 -5.5949 31 1 -2.5705 -3.9988 -5.4971 32 1 -0.0671 -3.5872 -6.2929 33 1 0.9594 -4.3890 -0.0465 34 1 1.3639 -2.3171 2.1080 35 1 0.2525 -3.7219 2.0756 36 1 2.0175 -5.2702 2.6252 37 1 2.4643 -3.8436 3.6152 38 1 4.2788 -4.8541 1.8979 39 1 4.0675 -3.0773 1.9888 40 1 3.1575 -5.0075 -0.1426 41 1 3.6328 -3.2927 -0.2980 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889085139.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:22:05 Heat of formation + Delta-G solvation = -62.939101 kcal Electronic energy + Delta-G solvation = -23418.934956 eV Core-core repulsion = 20105.849980 eV Total energy + Delta-G solvation = -3313.084975 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.01215 -38.49192 -36.45779 -35.79249 -33.22966 -32.25452 -31.22032 -28.57407 -27.96110 -26.71294 -25.83312 -23.71715 -21.63899 -20.15254 -19.92513 -19.48492 -18.52254 -16.91163 -16.28691 -16.04012 -15.77068 -14.84680 -14.52069 -14.33295 -14.00085 -13.78430 -13.36254 -13.18805 -12.79132 -12.62102 -12.51323 -12.29721 -11.70467 -11.53273 -11.22644 -11.06465 -10.78358 -10.70162 -10.59555 -10.52252 -10.46613 -10.36795 -10.26876 -10.06361 -9.97080 -9.63966 -9.02058 -8.76276 -8.51718 -7.69369 -6.79263 -5.90609 -3.59686 3.26070 3.43172 3.50118 3.56390 3.69378 4.42111 4.58852 4.67677 4.76085 4.91328 5.17811 5.28477 5.33497 5.35446 5.47812 5.54866 5.61026 5.70873 5.86574 5.89771 6.01546 6.02914 6.17015 6.20676 6.24067 6.31839 6.35676 6.43145 6.51501 6.56693 6.60954 6.71776 6.90610 7.08499 7.23340 7.32799 7.39525 7.84072 8.50815 8.86869 9.31649 9.47162 9.95151 10.62460 11.19339 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.014746 B = 0.007326 C = 0.005526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.372000 B = 3820.919596 C = 5065.562643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.074 3.926 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.334 4.334 8 H 0.073 0.927 9 N -0.457 5.457 10 C 0.476 3.524 11 O -0.504 6.504 12 C -0.119 4.119 13 C -0.101 4.101 14 H 0.112 0.888 15 C -0.133 4.133 16 C 0.106 3.894 17 N -0.751 5.751 18 C 0.516 3.484 19 O -0.483 6.483 20 C 0.132 3.868 21 C -0.124 4.124 22 C -0.123 4.123 23 C -0.117 4.117 24 C -0.133 4.133 25 H 0.259 0.741 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.402 0.598 33 H 0.063 0.937 34 H 0.092 0.908 35 H 0.050 0.950 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.051 0.949 39 H 0.064 0.936 40 H 0.050 0.950 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.244 -13.442 -2.866 14.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.136 4.136 3 Si 0.733 3.267 4 H -0.206 1.206 5 H -0.217 1.217 6 H -0.202 1.202 7 C -0.461 4.461 8 H 0.090 0.910 9 N -0.181 5.181 10 C 0.262 3.738 11 O -0.379 6.379 12 C -0.160 4.160 13 C -0.123 4.123 14 H 0.130 0.870 15 C -0.171 4.171 16 C -0.019 4.019 17 N -0.410 5.410 18 C 0.301 3.699 19 O -0.354 6.354 20 C 0.027 3.973 21 C -0.162 4.162 22 C -0.161 4.161 23 C -0.155 4.155 24 C -0.171 4.171 25 H 0.069 0.931 26 H 0.099 0.901 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.240 0.760 33 H 0.081 0.919 34 H 0.110 0.890 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.037 -12.325 -3.122 13.072 hybrid contribution 0.394 0.659 -0.348 0.843 sum -2.643 -11.666 -3.470 12.455 Atomic orbital electron populations 1.69827 1.06401 1.26772 1.44133 1.25114 0.94691 0.98942 0.94805 0.86343 0.79305 0.82925 0.78160 1.20558 1.21665 1.20173 1.18723 0.94773 0.84272 1.48319 0.90958 1.43323 1.44881 1.06891 1.22994 1.19617 0.83629 0.88871 0.81695 1.90583 1.61365 1.32949 1.52984 1.21522 0.98713 0.99640 0.96112 1.21650 0.98019 0.98360 0.94303 0.87012 1.22714 1.01857 0.98325 0.94166 1.21919 0.88616 0.94835 0.96490 1.46318 1.32936 1.49115 1.12611 1.20831 0.84618 0.79500 0.84915 1.90864 1.27680 1.32975 1.83847 1.21616 0.94357 0.88859 0.92476 1.22631 0.96724 1.02130 0.94755 1.22442 0.96215 0.99111 0.98309 1.22257 0.96952 1.00750 0.95518 1.22507 0.97858 1.00147 0.96634 0.93106 0.90148 0.91174 0.90168 0.89495 0.91026 0.91743 0.76039 0.91863 0.88955 0.93120 0.92639 0.92446 0.93043 0.91681 0.93168 0.90833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -25.28 11.65 55.50 0.65 -24.63 16 2 C 0.07 2.15 4.34 -17.47 -0.08 2.07 16 3 Si 0.90 23.18 29.60 -169.99 -5.03 18.15 16 4 H -0.28 -7.52 7.11 56.52 0.40 -7.12 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 7 C -0.33 -9.36 7.29 -14.93 -0.11 -9.47 16 8 H 0.07 2.00 7.41 -52.49 -0.39 1.61 16 9 N -0.46 -11.60 2.44 -106.55 -0.26 -11.86 16 10 C 0.48 12.37 6.42 -10.99 -0.07 12.30 16 11 O -0.50 -15.38 11.32 -17.49 -0.20 -15.58 16 12 C -0.12 -2.29 3.45 -27.88 -0.10 -2.38 16 13 C -0.10 -1.76 2.56 -90.63 -0.23 -1.99 16 14 H 0.11 2.16 8.02 -51.93 -0.42 1.74 16 15 C -0.13 -1.48 6.70 -25.10 -0.17 -1.65 16 16 C 0.11 1.07 7.78 -3.12 -0.02 1.04 16 17 N -0.75 -10.44 6.24 -59.20 -0.37 -10.80 16 18 C 0.52 10.08 7.70 -10.86 -0.08 10.00 16 19 O -0.48 -12.32 15.18 -17.48 -0.27 -12.59 16 20 C 0.13 2.66 3.20 -66.81 -0.21 2.45 16 21 C -0.12 -2.36 6.40 -25.07 -0.16 -2.52 16 22 C -0.12 -1.88 6.91 -24.74 -0.17 -2.05 16 23 C -0.12 -1.86 6.83 -25.07 -0.17 -2.03 16 24 C -0.13 -2.40 6.23 -25.61 -0.16 -2.56 16 25 H 0.26 7.58 8.32 -40.82 -0.34 7.25 16 26 H 0.08 1.39 7.71 -51.93 -0.40 0.99 16 27 H 0.07 1.24 7.87 -51.93 -0.41 0.83 16 28 H 0.08 0.80 7.92 -51.93 -0.41 0.39 16 29 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.40 4.85 8.96 -40.82 -0.37 4.49 16 33 H 0.06 1.14 5.84 -51.93 -0.30 0.84 16 34 H 0.09 2.09 6.89 -51.93 -0.36 1.73 16 35 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.07 1.52 7.21 -51.93 -0.37 1.15 16 LS Contribution 323.01 15.07 4.87 4.87 Total: -1.00 -36.70 323.01 -8.71 -45.41 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -6.37 Total: 3.83 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: -1.74 Total: 3.21 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: 0.02 Total: -47.29 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: -0.46 Total: -28.17 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -5.03 Total: 18.15 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -36.70 -8.71 -45.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889085139.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.528 kcal (2) G-P(sol) polarization free energy of solvation -36.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds