Wall clock time and date at job start Tue Mar 31 2020 02:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86805 * 119.99905 * 2 1 4 4 H 1.48500 * 109.46817 * 269.99980 * 3 2 1 5 5 H 1.48501 * 109.46871 * 29.99804 * 3 2 1 6 6 H 1.48495 * 109.47197 * 149.99939 * 3 2 1 7 7 C 1.38946 * 120.00312 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99954 * 199.39997 * 7 2 1 9 9 N 1.37105 * 119.99896 * 19.40495 * 7 2 1 10 10 C 1.34767 * 120.00180 * 42.44193 * 9 7 2 11 11 O 1.21300 * 120.00381 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00131 * 180.02562 * 10 9 7 13 13 C 1.53002 * 109.47348 * 180.02562 * 12 10 9 14 14 H 1.09003 * 110.43496 * 303.91409 * 13 12 10 15 15 C 1.54629 * 110.60199 * 181.29909 * 13 12 10 16 16 C 1.54482 * 101.76426 * 216.47025 * 15 13 12 17 17 N 1.46768 * 105.47579 * 25.40805 * 16 15 13 18 18 C 1.34420 * 111.29791 * 342.98827 * 17 16 15 19 19 O 1.21281 * 124.93782 * 180.66627 * 18 17 16 20 20 C 1.46498 * 119.99665 * 222.44641 * 9 7 2 21 21 C 1.54269 * 110.03365 * 54.32370 * 20 9 7 22 22 C 1.54886 * 104.19457 * 217.10218 * 21 20 9 23 23 C 1.54886 * 102.75216 * 37.94404 * 22 21 20 24 24 C 1.53874 * 110.03576 * 297.15705 * 20 9 7 25 25 H 0.97000 * 120.00369 * 354.88670 * 1 2 3 26 26 H 1.09003 * 109.47099 * 60.00581 * 12 10 9 27 27 H 1.08999 * 109.47594 * 299.99914 * 12 10 9 28 28 H 1.09003 * 110.96418 * 334.58027 * 15 13 12 29 29 H 1.08996 * 110.97253 * 98.34755 * 15 13 12 30 30 H 1.08992 * 110.24880 * 144.41378 * 16 15 13 31 31 H 1.09006 * 110.24222 * 266.40991 * 16 15 13 32 32 H 0.96999 * 124.34652 * 162.98207 * 17 16 15 33 33 H 1.08997 * 110.01641 * 175.76329 * 20 9 7 34 34 H 1.08997 * 110.48576 * 335.78115 * 21 20 9 35 35 H 1.08999 * 110.48661 * 98.42801 * 21 20 9 36 36 H 1.08997 * 110.75906 * 279.62290 * 22 21 20 37 37 H 1.09003 * 110.91322 * 156.32844 * 22 21 20 38 38 H 1.08994 * 110.49368 * 203.38060 * 23 22 21 39 39 H 1.09004 * 110.48893 * 80.73219 * 23 22 21 40 40 H 1.09002 * 110.03201 * 238.57227 * 24 20 9 41 41 H 1.09006 * 110.02827 * 359.97438 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4403 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 3.0429 -1.2296 0.3112 9 7 1.3819 -2.3571 -0.3934 10 6 0.5755 -2.3509 -1.4733 11 8 0.4049 -1.3247 -2.0970 12 6 -0.1141 -3.6190 -1.9060 13 6 -0.9625 -3.3399 -3.1483 14 1 -1.6700 -2.5340 -2.9528 15 6 -1.7085 -4.6181 -3.5962 16 6 -1.6649 -4.4855 -5.1347 17 7 -0.4910 -3.6531 -5.4229 18 6 -0.0786 -2.9941 -4.3263 19 8 0.8622 -2.2296 -4.2881 20 6 1.5883 -3.5967 0.3595 21 6 1.2593 -3.3708 1.8497 22 6 2.3117 -4.2209 2.6040 23 6 3.5870 -4.0254 1.7471 24 6 3.0682 -4.0129 0.2943 25 1 -0.4851 0.8367 0.0749 26 1 -0.7556 -3.9768 -1.1005 27 1 0.6330 -4.3775 -2.1396 28 1 -1.1809 -5.5132 -3.2668 29 1 -2.7363 -4.6172 -3.2335 30 1 -1.5535 -5.4672 -5.5949 31 1 -2.5705 -3.9988 -5.4971 32 1 -0.0671 -3.5872 -6.2929 33 1 0.9594 -4.3890 -0.0465 34 1 1.3639 -2.3171 2.1080 35 1 0.2525 -3.7219 2.0756 36 1 2.0175 -5.2702 2.6252 37 1 2.4643 -3.8436 3.6152 38 1 4.2788 -4.8541 1.8979 39 1 4.0675 -3.0773 1.9888 40 1 3.1575 -5.0075 -0.1426 41 1 3.6328 -3.2927 -0.2980 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889085139.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:22:04 Heat of formation + Delta-G solvation = -89.157089 kcal Electronic energy + Delta-G solvation = -23420.071853 eV Core-core repulsion = 20105.849980 eV Total energy + Delta-G solvation = -3314.221873 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.40747 -40.17825 -38.13840 -37.22085 -35.12218 -33.85341 -33.09573 -29.81770 -29.38385 -28.34397 -27.37584 -25.53230 -22.65102 -21.79468 -21.30659 -21.05456 -20.19563 -18.28424 -17.93403 -17.54515 -17.46303 -16.63617 -16.17073 -15.87413 -15.56576 -15.24545 -15.00058 -14.51022 -14.38095 -14.13329 -13.99665 -13.43053 -13.38365 -13.05583 -12.91344 -12.89094 -12.47054 -12.39146 -12.19834 -12.04603 -12.01281 -11.82017 -11.80087 -11.72861 -11.33177 -11.23252 -10.66946 -10.55195 -9.93188 -9.70351 -8.84566 -8.10187 -5.79574 1.31025 1.42518 1.43962 1.78538 2.35276 2.56587 2.72446 3.23167 3.35258 3.62350 3.68480 3.92006 3.99044 4.00755 4.15322 4.33783 4.43723 4.53570 4.60274 4.70311 4.74071 4.80299 4.84434 4.87203 4.93792 4.97800 4.98970 5.15746 5.17559 5.23011 5.31078 5.33040 5.49833 5.60483 5.63243 5.76598 6.08358 6.18234 6.33878 7.18954 7.43476 7.51852 7.92885 8.63866 8.99775 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.014746 B = 0.007326 C = 0.005526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.372000 B = 3820.919596 C = 5065.562643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.023 3.977 3 Si 0.953 3.047 4 H -0.303 1.303 5 H -0.279 1.279 6 H -0.256 1.256 7 C -0.335 4.335 8 H 0.066 0.934 9 N -0.472 5.472 10 C 0.455 3.545 11 O -0.561 6.561 12 C -0.107 4.107 13 C -0.106 4.106 14 H 0.082 0.918 15 C -0.116 4.116 16 C 0.102 3.898 17 N -0.734 5.734 18 C 0.502 3.498 19 O -0.561 6.561 20 C 0.123 3.877 21 C -0.124 4.124 22 C -0.109 4.109 23 C -0.114 4.114 24 C -0.130 4.130 25 H 0.253 0.747 26 H 0.105 0.895 27 H 0.090 0.910 28 H 0.103 0.897 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.082 0.918 32 H 0.411 0.589 33 H 0.091 0.909 34 H 0.046 0.954 35 H 0.060 0.940 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.085 0.915 39 H 0.043 0.957 40 H 0.082 0.918 41 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.945 -17.454 -2.638 18.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.182 4.182 3 Si 0.780 3.220 4 H -0.231 1.231 5 H -0.205 1.205 6 H -0.180 1.180 7 C -0.463 4.463 8 H 0.083 0.917 9 N -0.196 5.196 10 C 0.243 3.757 11 O -0.439 6.439 12 C -0.147 4.147 13 C -0.128 4.128 14 H 0.100 0.900 15 C -0.154 4.154 16 C -0.021 4.021 17 N -0.391 5.391 18 C 0.289 3.711 19 O -0.438 6.438 20 C 0.018 3.982 21 C -0.162 4.162 22 C -0.146 4.146 23 C -0.151 4.151 24 C -0.168 4.168 25 H 0.062 0.938 26 H 0.123 0.877 27 H 0.108 0.892 28 H 0.121 0.879 29 H 0.133 0.867 30 H 0.132 0.868 31 H 0.100 0.900 32 H 0.249 0.751 33 H 0.109 0.891 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.107 0.893 37 H 0.086 0.914 38 H 0.104 0.896 39 H 0.062 0.938 40 H 0.100 0.900 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -3.758 -16.416 -2.883 17.085 hybrid contribution 0.618 1.823 -0.496 1.988 sum -3.141 -14.592 -3.379 15.304 Atomic orbital electron populations 1.69918 1.07468 1.26655 1.46388 1.25793 0.95418 1.01702 0.95282 0.85578 0.79430 0.80199 0.76830 1.23093 1.20486 1.18041 1.18848 0.94635 0.85843 1.46969 0.91663 1.43624 1.44473 1.07816 1.23674 1.20818 0.83281 0.90571 0.81024 1.90545 1.63144 1.35653 1.54599 1.21446 0.99257 0.96321 0.97718 1.21657 0.97308 1.00924 0.92890 0.89959 1.22782 1.02698 0.95317 0.94565 1.22319 0.87412 0.96276 0.96099 1.46308 1.33311 1.47810 1.11652 1.21343 0.83948 0.78904 0.86946 1.90818 1.31134 1.36496 1.85321 1.21973 0.96364 0.87201 0.92619 1.22554 0.98769 1.00211 0.94699 1.22400 0.94052 1.00173 0.98011 1.22250 0.97845 1.01106 0.93943 1.22470 0.95822 1.00639 0.97914 0.93831 0.87659 0.89169 0.87900 0.86742 0.86837 0.89961 0.75060 0.89142 0.93526 0.92142 0.89300 0.91393 0.89621 0.93800 0.89957 0.94545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -55.13 11.65 21.66 0.25 -54.88 16 2 C 0.02 1.42 4.34 84.93 0.37 1.79 16 3 Si 0.95 49.83 29.60 68.60 2.03 51.86 16 4 H -0.30 -16.92 7.11 99.48 0.71 -16.21 16 5 H -0.28 -13.94 7.11 99.48 0.71 -13.23 16 6 H -0.26 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.33 -19.63 7.29 84.04 0.61 -19.02 16 8 H 0.07 3.80 7.41 -2.91 -0.02 3.78 16 9 N -0.47 -24.64 2.44 -609.39 -1.49 -26.12 16 10 C 0.45 24.39 6.42 87.66 0.56 24.95 16 11 O -0.56 -36.22 11.32 18.93 0.21 -36.00 16 12 C -0.11 -4.01 3.45 29.85 0.10 -3.90 16 13 C -0.11 -3.58 2.56 -10.80 -0.03 -3.60 16 14 H 0.08 3.27 8.02 -2.39 -0.02 3.25 16 15 C -0.12 -2.09 6.70 31.65 0.21 -1.87 16 16 C 0.10 1.59 7.78 86.83 0.68 2.26 16 17 N -0.73 -19.05 6.24 -459.80 -2.87 -21.92 16 18 C 0.50 19.81 7.70 87.90 0.68 20.49 16 19 O -0.56 -30.19 15.18 18.99 0.29 -29.91 16 20 C 0.12 4.80 3.20 45.72 0.15 4.95 16 21 C -0.12 -4.59 6.40 31.67 0.20 -4.39 16 22 C -0.11 -2.98 6.91 31.88 0.22 -2.76 16 23 C -0.11 -3.34 6.83 31.67 0.22 -3.13 16 24 C -0.13 -4.50 6.23 31.32 0.20 -4.30 16 25 H 0.25 15.62 8.32 -92.71 -0.77 14.85 16 26 H 0.11 3.38 7.71 -2.39 -0.02 3.36 16 27 H 0.09 2.99 7.87 -2.39 -0.02 2.97 16 28 H 0.10 1.45 7.92 -2.39 -0.02 1.43 16 29 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 32 H 0.41 9.29 8.96 -92.71 -0.83 8.46 16 33 H 0.09 3.01 5.84 -2.39 -0.01 2.99 16 34 H 0.05 2.16 6.89 -2.39 -0.02 2.14 16 35 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.09 1.96 8.14 -2.39 -0.02 1.95 16 39 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 40 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 41 H 0.04 1.52 7.21 -2.38 -0.02 1.50 16 Total: -1.00 -89.87 323.01 2.80 -87.07 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: 0.20 Total: 18.44 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: 4.16 Total: 11.46 kcal Atomic # 7 Polarization: -98.82 SS G_CDS: -4.10 Total: -102.92 kcal Atomic # 8 Polarization: -66.41 SS G_CDS: 0.50 Total: -65.91 kcal Atomic # 14 Polarization: 49.83 SS G_CDS: 2.03 Total: 51.86 kcal Total: -89.87 2.80 -87.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889085139.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.083 kcal (2) G-P(sol) polarization free energy of solvation -89.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds