Wall clock time and date at job start Tue Mar 31 2020 01:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86791 * 120.00285 * 2 1 4 4 H 1.48502 * 109.47189 * 90.00360 * 3 2 1 5 5 H 1.48501 * 109.47504 * 210.00485 * 3 2 1 6 6 H 1.48497 * 109.47392 * 330.00611 * 3 2 1 7 7 C 1.37879 * 119.99584 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99767 * 185.22459 * 7 2 1 9 9 C 1.50701 * 120.00162 * 5.21992 * 7 2 1 10 10 O 1.45203 * 112.84784 * 293.85658 * 9 7 2 11 11 C 1.34228 * 117.00146 * 296.89357 * 10 9 7 12 12 O 1.20833 * 119.99922 * 354.76300 * 11 10 9 13 13 C 1.50693 * 120.00223 * 174.76892 * 11 10 9 14 14 H 1.09005 * 109.69640 * 304.29617 * 13 11 10 15 15 O 1.42811 * 109.70490 * 183.73484 * 13 11 10 16 16 C 1.42747 * 110.74613 * 242.26674 * 15 13 11 17 17 C 1.54117 * 107.20980 * 341.96864 * 16 15 13 18 18 H 1.08998 * 113.09006 * 264.19838 * 17 16 15 19 19 C 1.55027 * 108.54725 * 137.69207 * 17 16 15 20 20 C 1.54199 * 106.92034 * 249.41882 * 19 17 16 21 21 C 1.54866 * 104.21064 * 24.19134 * 20 19 17 22 22 C 1.53550 * 109.70013 * 64.85893 * 13 11 10 23 23 H 1.08997 * 112.67993 * 256.71956 * 22 13 11 24 24 C 1.53778 * 113.61244 * 162.55111 * 9 7 2 25 25 C 1.53780 * 87.08187 * 220.01737 * 24 9 7 26 26 C 1.53775 * 113.61160 * 65.05296 * 9 7 2 27 27 H 0.96996 * 120.00656 * 174.93989 * 1 2 3 28 28 H 1.09004 * 109.92605 * 222.55838 * 16 15 13 29 29 H 1.09001 * 110.00586 * 101.42865 * 16 15 13 30 30 H 1.09000 * 109.50181 * 130.28170 * 19 17 16 31 31 H 1.09004 * 110.36774 * 9.03258 * 19 17 16 32 32 H 1.09003 * 110.47893 * 265.51361 * 20 19 17 33 33 H 1.08994 * 110.59782 * 142.93554 * 20 19 17 34 34 H 1.09005 * 110.73306 * 203.49149 * 21 20 19 35 35 H 1.08997 * 110.73691 * 80.17513 * 21 20 19 36 36 H 1.08998 * 113.61806 * 334.56787 * 24 9 7 37 37 H 1.09003 * 113.61299 * 105.46981 * 24 9 7 38 38 H 1.09000 * 113.61620 * 270.88675 * 25 24 9 39 39 H 1.09000 * 113.61579 * 139.98213 * 25 24 9 40 40 H 1.09005 * 113.61249 * 254.52293 * 26 9 7 41 41 H 1.08998 * 113.61837 * 25.43714 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 1.4001 5 1 3.5467 1.4401 -0.7001 6 1 1.4467 2.6526 -0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0811 -1.1961 0.0846 9 6 1.2556 -2.4964 -0.1199 10 8 0.4113 -2.7687 1.0297 11 6 1.0252 -2.9270 2.2128 12 8 2.2321 -2.9354 2.2709 13 6 0.2092 -3.0944 3.4686 14 1 -0.4755 -2.2532 3.5767 15 8 1.0765 -3.1578 4.6015 16 6 0.9554 -4.4179 5.2612 17 6 -0.3686 -5.0525 4.7925 18 1 -1.1968 -4.8678 5.4766 19 6 -0.1244 -6.5593 4.5216 20 6 -0.2253 -6.7632 2.9965 21 6 0.1004 -5.3698 2.4043 22 6 -0.5879 -4.4049 3.3971 23 1 -1.6408 -4.2442 3.1654 24 6 2.1445 -3.6829 -0.5285 25 6 0.9824 -4.1434 -1.4243 26 6 0.5366 -2.6722 -1.4677 27 1 -0.4851 -0.8367 -0.0741 28 1 0.9345 -4.2714 6.3411 29 1 1.7918 -5.0623 4.9906 30 1 -0.8890 -7.1486 5.0278 31 1 0.8653 -6.8523 4.8721 32 1 -1.2339 -7.0695 2.7186 33 1 0.5028 -7.5007 2.6592 34 1 -0.3257 -5.2654 1.4064 35 1 1.1769 -5.2006 2.3851 36 1 3.0350 -3.3902 -1.0847 37 1 2.3621 -4.3680 0.2909 38 1 0.2743 -4.7995 -0.9180 39 1 1.3035 -4.5311 -2.3911 40 1 -0.5439 -2.5415 -1.4066 41 1 0.9876 -2.1032 -2.2807 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892984543.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:03 Heat of formation + Delta-G solvation = -117.725485 kcal Electronic energy + Delta-G solvation = -23983.163366 eV Core-core repulsion = 20635.409924 eV Total energy + Delta-G solvation = -3347.753442 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.77662 -39.11693 -36.94617 -35.80582 -34.15235 -32.40523 -30.96796 -29.47653 -26.61406 -25.99206 -24.74830 -23.80142 -22.41343 -21.13885 -19.92906 -19.90321 -18.35470 -17.40928 -16.92536 -16.27629 -15.65064 -15.25058 -14.72630 -14.48218 -14.30749 -13.96350 -13.74403 -13.58142 -13.19967 -12.80927 -12.46716 -12.29163 -11.95654 -11.47508 -11.29886 -11.12687 -11.04202 -10.86242 -10.81125 -10.70202 -10.48500 -10.42074 -10.36128 -10.15835 -10.09544 -10.01456 -9.79799 -9.11834 -8.80958 -8.44211 -8.14032 -6.39888 -4.18207 3.22932 3.44536 3.45847 3.61550 3.63646 4.06490 4.18395 4.50238 4.55504 4.82451 5.08762 5.18911 5.21598 5.23833 5.32348 5.34323 5.42767 5.54242 5.56994 5.60597 5.70698 5.77937 5.78556 5.84627 5.91168 5.97153 6.01869 6.17002 6.20983 6.30234 6.34499 6.35857 6.69781 6.71401 6.86831 7.08422 7.13822 7.39234 7.74413 8.16542 8.43985 8.81790 9.10362 9.58519 10.98131 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.021609 B = 0.006715 C = 0.005686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.464329 B = 4169.054621 C = 4923.127429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.031 3.969 3 Si 1.067 2.933 4 H -0.287 1.287 5 H -0.286 1.286 6 H -0.283 1.283 7 C -0.596 4.596 8 H 0.059 0.941 9 C 0.213 3.787 10 O -0.355 6.355 11 C 0.461 3.539 12 O -0.493 6.493 13 C 0.091 3.909 14 H 0.109 0.891 15 O -0.348 6.348 16 C 0.056 3.944 17 C -0.125 4.125 18 H 0.097 0.903 19 C -0.115 4.115 20 C -0.121 4.121 21 C -0.127 4.127 22 C -0.105 4.105 23 H 0.107 0.893 24 C -0.143 4.143 25 C -0.149 4.149 26 C -0.109 4.109 27 H 0.279 0.721 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.053 0.947 38 H 0.068 0.932 39 H 0.054 0.946 40 H 0.058 0.942 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.707 -12.194 6.312 14.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.177 4.177 3 Si 0.895 3.105 4 H -0.213 1.213 5 H -0.212 1.212 6 H -0.209 1.209 7 C -0.633 4.633 8 H 0.077 0.923 9 C 0.179 3.821 10 O -0.272 6.272 11 C 0.302 3.698 12 O -0.380 6.380 13 C 0.031 3.969 14 H 0.126 0.874 15 O -0.267 6.267 16 C -0.020 4.020 17 C -0.144 4.144 18 H 0.115 0.885 19 C -0.152 4.152 20 C -0.159 4.159 21 C -0.164 4.164 22 C -0.123 4.123 23 H 0.125 0.875 24 C -0.181 4.181 25 C -0.186 4.186 26 C -0.146 4.146 27 H 0.091 0.909 28 H 0.099 0.901 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.381 -10.422 6.396 12.687 hybrid contribution 0.215 -1.709 -0.049 1.723 sum -3.166 -12.131 6.347 14.053 Atomic orbital electron populations 1.70676 1.06749 1.32113 1.43201 1.25875 0.96521 1.02608 0.92646 0.83572 0.74861 0.74996 0.77027 1.21333 1.21240 1.20860 1.22094 0.94868 0.90458 1.55897 0.92313 1.20851 0.87231 0.93427 0.80544 1.86379 1.44193 1.80151 1.16525 1.22937 0.87804 0.73726 0.85303 1.90568 1.15518 1.44965 1.86970 1.22118 0.90290 0.99942 0.84516 0.87365 1.88244 1.64348 1.34411 1.39673 1.23312 0.96100 0.85413 0.97216 1.23450 0.98207 0.96102 0.96598 0.88474 1.22369 1.01856 0.94313 0.96695 1.22351 1.01594 0.97280 0.94670 1.22703 1.01064 0.93713 0.98936 1.23133 1.00631 0.93098 0.95488 0.87472 1.23299 0.97373 0.98826 0.98607 1.22964 0.99016 0.97434 0.99183 1.22936 0.99896 0.94227 0.97571 0.90871 0.90074 0.92036 0.91645 0.91262 0.91422 0.91514 0.90151 0.90784 0.90166 0.92813 0.91317 0.92699 0.92343 0.89430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.22 13.52 55.43 0.75 -25.47 16 2 C 0.03 0.90 5.36 -17.82 -0.10 0.80 16 3 Si 1.07 25.70 29.91 -169.99 -5.08 20.62 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.60 -17.03 7.44 -34.44 -0.26 -17.28 16 8 H 0.06 1.76 7.82 -52.49 -0.41 1.35 16 9 C 0.21 5.35 0.11 -90.96 -0.01 5.34 16 10 O -0.35 -8.65 8.79 -39.25 -0.34 -8.99 16 11 C 0.46 10.87 4.43 36.00 0.16 11.03 16 12 O -0.49 -13.19 14.38 -25.44 -0.37 -13.56 16 13 C 0.09 1.72 3.99 -27.60 -0.11 1.61 16 14 H 0.11 2.01 8.14 -51.93 -0.42 1.58 16 15 O -0.35 -6.63 10.46 -55.04 -0.58 -7.21 16 16 C 0.06 0.78 7.18 37.74 0.27 1.05 16 17 C -0.13 -1.46 4.16 -87.69 -0.36 -1.83 16 18 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 19 C -0.11 -1.15 6.34 -25.03 -0.16 -1.31 16 20 C -0.12 -1.35 6.82 -25.12 -0.17 -1.52 16 21 C -0.13 -1.88 4.91 -24.90 -0.12 -2.01 16 22 C -0.10 -1.51 3.78 -88.21 -0.33 -1.85 16 23 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 24 C -0.14 -3.19 6.88 -25.92 -0.18 -3.37 16 25 C -0.15 -2.84 8.03 -25.91 -0.21 -3.05 16 26 C -0.11 -2.43 6.51 -25.92 -0.17 -2.60 16 27 H 0.28 8.13 5.72 -40.82 -0.23 7.89 16 28 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.06 0.86 7.23 -51.93 -0.38 0.49 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.68 7.21 -51.93 -0.37 0.30 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.08 1.25 7.94 -51.93 -0.41 0.84 16 35 H 0.07 1.32 6.63 -51.93 -0.34 0.98 16 36 H 0.08 1.78 8.09 -51.93 -0.42 1.36 16 37 H 0.05 1.20 7.26 -51.93 -0.38 0.83 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.06 1.30 7.70 -51.93 -0.40 0.90 16 41 H 0.09 1.98 8.09 -51.93 -0.42 1.56 16 LS Contribution 321.29 15.07 4.84 4.84 Total: -1.00 -32.75 321.29 -8.89 -41.64 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -6.37 Total: 3.11 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: -1.75 Total: -14.99 kcal Atomic # 7 Polarization: -26.22 SS G_CDS: 0.75 Total: -25.47 kcal Atomic # 8 Polarization: -28.47 SS G_CDS: -1.29 Total: -29.76 kcal Atomic # 14 Polarization: 25.70 SS G_CDS: -5.08 Total: 20.62 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.75 -8.89 -41.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892984543.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.081 kcal (2) G-P(sol) polarization free energy of solvation -32.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds