Wall clock time and date at job start Tue Mar 31 2020 01:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86791 * 120.00285 * 2 1 4 4 H 1.48502 * 109.47189 * 90.00360 * 3 2 1 5 5 H 1.48501 * 109.47504 * 210.00485 * 3 2 1 6 6 H 1.48497 * 109.47392 * 330.00611 * 3 2 1 7 7 C 1.37879 * 119.99584 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99767 * 185.22459 * 7 2 1 9 9 C 1.50701 * 120.00162 * 5.21992 * 7 2 1 10 10 O 1.45203 * 112.84784 * 293.85658 * 9 7 2 11 11 C 1.34228 * 117.00146 * 296.89357 * 10 9 7 12 12 O 1.20833 * 119.99922 * 354.76300 * 11 10 9 13 13 C 1.50693 * 120.00223 * 174.76892 * 11 10 9 14 14 H 1.09005 * 109.69640 * 304.29617 * 13 11 10 15 15 O 1.42811 * 109.70490 * 183.73484 * 13 11 10 16 16 C 1.42747 * 110.74613 * 242.26674 * 15 13 11 17 17 C 1.54117 * 107.20980 * 341.96864 * 16 15 13 18 18 H 1.08998 * 113.09006 * 264.19838 * 17 16 15 19 19 C 1.55027 * 108.54725 * 137.69207 * 17 16 15 20 20 C 1.54199 * 106.92034 * 249.41882 * 19 17 16 21 21 C 1.54866 * 104.21064 * 24.19134 * 20 19 17 22 22 C 1.53550 * 109.70013 * 64.85893 * 13 11 10 23 23 H 1.08997 * 112.67993 * 256.71956 * 22 13 11 24 24 C 1.53778 * 113.61244 * 162.55111 * 9 7 2 25 25 C 1.53780 * 87.08187 * 220.01737 * 24 9 7 26 26 C 1.53775 * 113.61160 * 65.05296 * 9 7 2 27 27 H 0.96996 * 120.00656 * 174.93989 * 1 2 3 28 28 H 1.09004 * 109.92605 * 222.55838 * 16 15 13 29 29 H 1.09001 * 110.00586 * 101.42865 * 16 15 13 30 30 H 1.09000 * 109.50181 * 130.28170 * 19 17 16 31 31 H 1.09004 * 110.36774 * 9.03258 * 19 17 16 32 32 H 1.09003 * 110.47893 * 265.51361 * 20 19 17 33 33 H 1.08994 * 110.59782 * 142.93554 * 20 19 17 34 34 H 1.09005 * 110.73306 * 203.49149 * 21 20 19 35 35 H 1.08997 * 110.73691 * 80.17513 * 21 20 19 36 36 H 1.08998 * 113.61806 * 334.56787 * 24 9 7 37 37 H 1.09003 * 113.61299 * 105.46981 * 24 9 7 38 38 H 1.09000 * 113.61620 * 270.88675 * 25 24 9 39 39 H 1.09000 * 113.61579 * 139.98213 * 25 24 9 40 40 H 1.09005 * 113.61249 * 254.52293 * 26 9 7 41 41 H 1.08998 * 113.61837 * 25.43714 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 1.4001 5 1 3.5467 1.4401 -0.7001 6 1 1.4467 2.6526 -0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0811 -1.1961 0.0846 9 6 1.2556 -2.4964 -0.1199 10 8 0.4113 -2.7687 1.0297 11 6 1.0252 -2.9270 2.2128 12 8 2.2321 -2.9354 2.2709 13 6 0.2092 -3.0944 3.4686 14 1 -0.4755 -2.2532 3.5767 15 8 1.0765 -3.1578 4.6015 16 6 0.9554 -4.4179 5.2612 17 6 -0.3686 -5.0525 4.7925 18 1 -1.1968 -4.8678 5.4766 19 6 -0.1244 -6.5593 4.5216 20 6 -0.2253 -6.7632 2.9965 21 6 0.1004 -5.3698 2.4043 22 6 -0.5879 -4.4049 3.3971 23 1 -1.6408 -4.2442 3.1654 24 6 2.1445 -3.6829 -0.5285 25 6 0.9824 -4.1434 -1.4243 26 6 0.5366 -2.6722 -1.4677 27 1 -0.4851 -0.8367 -0.0741 28 1 0.9345 -4.2714 6.3411 29 1 1.7918 -5.0623 4.9906 30 1 -0.8890 -7.1486 5.0278 31 1 0.8653 -6.8523 4.8721 32 1 -1.2339 -7.0695 2.7186 33 1 0.5028 -7.5007 2.6592 34 1 -0.3257 -5.2654 1.4064 35 1 1.1769 -5.2006 2.3851 36 1 3.0350 -3.3902 -1.0847 37 1 2.3621 -4.3680 0.2909 38 1 0.2743 -4.7995 -0.9180 39 1 1.3035 -4.5311 -2.3911 40 1 -0.5439 -2.5415 -1.4066 41 1 0.9876 -2.1032 -2.2807 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892984543.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:03 Heat of formation + Delta-G solvation = -136.498445 kcal Electronic energy + Delta-G solvation = -23983.977423 eV Core-core repulsion = 20635.409924 eV Total energy + Delta-G solvation = -3348.567499 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.21036 -40.80414 -38.74707 -37.03051 -36.05135 -34.56011 -32.21981 -30.54399 -28.12732 -27.67200 -26.57058 -25.36478 -24.15710 -22.34590 -21.41976 -20.95782 -20.25427 -19.35096 -18.19340 -17.93061 -17.15036 -17.05127 -16.27300 -15.93629 -15.73375 -15.54733 -15.34929 -15.06578 -14.66807 -14.50473 -14.10455 -13.79615 -13.36179 -13.18591 -12.80772 -12.59436 -12.39223 -12.29558 -12.14226 -12.04054 -12.00587 -11.95085 -11.94194 -11.79410 -11.71054 -11.41841 -11.22902 -10.92203 -10.71728 -10.42942 -10.16366 -8.65212 -6.44380 1.44377 1.46057 1.53542 1.72527 1.92305 2.48688 2.78998 3.09926 3.14179 3.51386 3.57949 3.79130 3.80124 3.98929 4.00905 4.08689 4.15442 4.22479 4.32130 4.37913 4.41987 4.50292 4.58335 4.65890 4.71942 4.73599 4.86741 4.88718 4.97902 5.01577 5.05532 5.10964 5.17508 5.24741 5.34746 5.40592 5.51331 5.73732 5.89204 6.06741 6.22367 6.58525 7.19367 7.38426 8.72910 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.021609 B = 0.006715 C = 0.005686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.464329 B = 4169.054621 C = 4923.127429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.010 4.010 3 Si 1.105 2.895 4 H -0.286 1.286 5 H -0.274 1.274 6 H -0.269 1.269 7 C -0.615 4.615 8 H 0.031 0.969 9 C 0.189 3.811 10 O -0.355 6.355 11 C 0.455 3.545 12 O -0.537 6.537 13 C 0.090 3.910 14 H 0.109 0.891 15 O -0.380 6.380 16 C 0.043 3.957 17 C -0.110 4.110 18 H 0.129 0.871 19 C -0.110 4.110 20 C -0.114 4.114 21 C -0.130 4.130 22 C -0.102 4.102 23 H 0.130 0.870 24 C -0.143 4.143 25 C -0.118 4.118 26 C -0.107 4.107 27 H 0.272 0.728 28 H 0.110 0.890 29 H 0.052 0.948 30 H 0.097 0.903 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.034 0.966 36 H 0.073 0.927 37 H 0.044 0.956 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.056 0.944 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.356 -13.968 7.114 16.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.213 4.213 3 Si 0.928 3.072 4 H -0.212 1.212 5 H -0.199 1.199 6 H -0.194 1.194 7 C -0.652 4.652 8 H 0.049 0.951 9 C 0.155 3.845 10 O -0.272 6.272 11 C 0.299 3.701 12 O -0.427 6.427 13 C 0.031 3.969 14 H 0.126 0.874 15 O -0.299 6.299 16 C -0.032 4.032 17 C -0.128 4.128 18 H 0.147 0.853 19 C -0.148 4.148 20 C -0.151 4.151 21 C -0.167 4.167 22 C -0.120 4.120 23 H 0.148 0.852 24 C -0.181 4.181 25 C -0.155 4.155 26 C -0.144 4.144 27 H 0.084 0.916 28 H 0.128 0.872 29 H 0.071 0.929 30 H 0.116 0.884 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.053 0.947 36 H 0.092 0.908 37 H 0.062 0.938 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.075 0.925 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.045 -12.221 7.199 15.054 hybrid contribution 0.810 -1.178 -0.244 1.450 sum -4.235 -13.399 6.956 15.679 Atomic orbital electron populations 1.70771 1.07113 1.31699 1.44886 1.27043 0.96779 1.05549 0.91913 0.83093 0.74607 0.72245 0.77282 1.21234 1.19943 1.19389 1.22278 0.93852 0.92751 1.56307 0.95111 1.21065 0.88663 0.93079 0.81685 1.86348 1.43798 1.80089 1.16983 1.24018 0.87893 0.71988 0.86244 1.90529 1.17562 1.47061 1.87522 1.22233 0.89755 1.02654 0.82261 0.87367 1.88214 1.64868 1.37218 1.39575 1.23666 0.97407 0.83741 0.98414 1.23512 0.97633 0.96670 0.94967 0.85309 1.22386 1.03147 0.93295 0.95931 1.22350 1.02843 0.94657 0.95260 1.22628 0.98449 0.96742 0.98892 1.23266 1.00773 0.90524 0.97448 0.85243 1.23238 0.98029 0.97815 0.99018 1.22825 0.97018 0.95584 1.00095 1.22869 0.99373 0.96605 0.95598 0.91649 0.87231 0.92926 0.88442 0.91153 0.89315 0.91143 0.91429 0.94693 0.90831 0.93756 0.89664 0.89336 0.92516 0.90177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.32 13.52 21.45 0.29 -54.03 16 2 C -0.01 -0.57 5.36 84.65 0.45 -0.11 16 3 Si 1.11 52.65 29.91 68.60 2.05 54.70 16 4 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 5 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 6 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.61 -36.45 7.44 25.60 0.19 -36.26 16 8 H 0.03 1.93 7.82 -2.91 -0.02 1.91 16 9 C 0.19 9.76 0.11 -11.02 0.00 9.76 16 10 O -0.36 -17.79 8.79 -51.40 -0.45 -18.24 16 11 C 0.46 22.24 4.43 71.23 0.32 22.55 16 12 O -0.54 -30.29 14.38 28.34 0.41 -29.88 16 13 C 0.09 3.45 3.99 30.03 0.12 3.57 16 14 H 0.11 4.07 8.14 -2.38 -0.02 4.05 16 15 O -0.38 -14.58 10.46 -130.04 -1.36 -15.94 16 16 C 0.04 1.14 7.18 72.36 0.52 1.66 16 17 C -0.11 -2.20 4.16 -8.90 -0.04 -2.23 16 18 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 19 C -0.11 -1.78 6.34 31.69 0.20 -1.58 16 20 C -0.11 -2.20 6.82 31.64 0.22 -1.98 16 21 C -0.13 -3.75 4.91 31.78 0.16 -3.59 16 22 C -0.10 -2.76 3.78 -9.24 -0.03 -2.80 16 23 H 0.13 2.95 8.14 -2.39 -0.02 2.93 16 24 C -0.14 -6.51 6.88 31.12 0.21 -6.29 16 25 C -0.12 -4.35 8.03 31.12 0.25 -4.10 16 26 C -0.11 -4.78 6.51 31.12 0.20 -4.58 16 27 H 0.27 16.19 5.72 -92.71 -0.53 15.66 16 28 H 0.11 2.23 8.14 -2.38 -0.02 2.21 16 29 H 0.05 1.45 7.23 -2.39 -0.02 1.44 16 30 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.07 1.15 7.21 -2.38 -0.02 1.13 16 32 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.07 2.07 7.94 -2.38 -0.02 2.05 16 35 H 0.03 1.28 6.63 -2.39 -0.02 1.26 16 36 H 0.07 3.37 8.09 -2.39 -0.02 3.35 16 37 H 0.04 2.06 7.26 -2.39 -0.02 2.04 16 38 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 39 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 40 H 0.06 2.52 7.70 -2.38 -0.02 2.50 16 41 H 0.08 3.65 8.09 -2.39 -0.02 3.64 16 Total: -1.00 -74.99 321.29 4.95 -70.04 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: 1.25 Total: 19.35 kcal Atomic # 6 Polarization: -28.76 SS G_CDS: 2.77 Total: -26.00 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: 0.29 Total: -54.03 kcal Atomic # 8 Polarization: -62.66 SS G_CDS: -1.40 Total: -64.06 kcal Atomic # 14 Polarization: 52.65 SS G_CDS: 2.05 Total: 54.70 kcal Total: -74.99 4.95 -70.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892984543.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.461 kcal (2) G-P(sol) polarization free energy of solvation -74.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds