Wall clock time and date at job start Tue Mar 31 2020 01:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47411 * 2 1 4 4 C 1.53003 * 109.47279 * 239.99790 * 2 1 3 5 5 C 1.50707 * 109.47137 * 119.99983 * 2 1 3 6 6 C 1.34516 * 125.78774 * 59.99909 * 5 2 1 7 7 C 1.41376 * 106.84089 * 179.97438 * 6 5 2 8 8 C 1.34515 * 106.84242 * 0.02562 * 7 6 5 9 9 C 1.50695 * 125.79319 * 179.73499 * 8 7 6 10 10 O 1.45201 * 109.47119 * 90.00242 * 9 8 7 11 11 C 1.34235 * 116.99938 * 180.02562 * 10 9 8 12 12 O 1.20823 * 119.99956 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99681 * 179.97438 * 11 10 9 14 14 C 1.53000 * 109.46944 * 179.97438 * 13 11 10 15 15 C 1.50701 * 109.46944 * 180.02562 * 14 13 11 16 16 H 1.07993 * 120.00298 * 359.97438 * 15 14 13 17 17 C 1.37882 * 119.99529 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00228 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99719 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47215 * 89.99623 * 19 17 15 21 21 H 1.48501 * 109.46814 * 209.99741 * 19 17 15 22 22 H 1.48499 * 109.46916 * 329.99809 * 19 17 15 23 23 O 1.34298 * 125.79155 * 239.97130 * 5 2 1 24 24 H 1.09005 * 109.46826 * 299.99801 * 1 2 3 25 25 H 1.08993 * 109.47282 * 59.99874 * 1 2 3 26 26 H 1.08997 * 109.46885 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47599 * 179.97438 * 3 2 1 28 28 H 1.09003 * 109.46974 * 300.00293 * 3 2 1 29 29 H 1.09005 * 109.46963 * 60.00283 * 3 2 1 30 30 H 1.09004 * 109.47007 * 300.00689 * 4 2 1 31 31 H 1.09003 * 109.46707 * 59.99951 * 4 2 1 32 32 H 1.08995 * 109.47001 * 179.97438 * 4 2 1 33 33 H 1.08004 * 126.58023 * 359.96223 * 6 5 2 34 34 H 1.08003 * 126.58479 * 179.97438 * 7 6 5 35 35 H 1.09004 * 109.47299 * 210.00077 * 9 8 7 36 36 H 1.09003 * 109.47154 * 330.00412 * 9 8 7 37 37 H 1.09006 * 109.47119 * 299.99295 * 13 11 10 38 38 H 1.09003 * 109.47573 * 59.99634 * 13 11 10 39 39 H 1.09004 * 109.47270 * 299.99816 * 14 13 11 40 40 H 1.08998 * 109.47212 * 60.00024 * 14 13 11 41 41 H 0.96999 * 119.99901 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0324 -0.7104 1.2305 6 6 1.7802 -1.9906 1.5578 7 6 2.4428 -2.2386 2.7818 8 6 3.0598 -1.0950 3.1296 9 6 3.8883 -0.8827 4.3704 10 8 5.2743 -1.2119 4.0891 11 6 6.1497 -1.0760 5.0976 12 8 5.7705 -0.6941 6.1794 13 6 7.6054 -1.3997 4.8804 14 6 8.3800 -1.1611 6.1781 15 6 9.8358 -1.4843 5.9608 16 1 10.1746 -1.8260 4.9941 17 6 10.7350 -1.3445 6.9967 18 7 10.3223 -0.9288 8.1742 19 14 12.5397 -1.7444 6.7272 20 1 13.2543 -0.5248 6.2717 21 1 13.1365 -2.2213 8.0006 22 1 12.6630 -2.8048 5.6950 23 8 2.8082 -0.1730 2.1860 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9563 0.8901 30 1 1.6766 -1.7490 -1.2492 31 1 1.6767 -0.2074 -2.1392 32 1 3.1300 -0.7209 -1.2494 33 1 1.1854 -2.6939 0.9939 34 1 2.4513 -3.1676 3.3325 35 1 3.8183 0.1601 4.6801 36 1 3.5173 -1.5248 5.1693 37 1 7.7051 -2.4440 4.5842 38 1 8.0069 -0.7593 4.0951 39 1 8.2802 -0.1168 6.4741 40 1 7.9787 -1.8013 6.9638 41 1 10.9550 -0.8302 8.9028 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893469287.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:00 Heat of formation + Delta-G solvation = -98.778486 kcal Electronic energy + Delta-G solvation = -21091.523110 eV Core-core repulsion = 17744.591271 eV Total energy + Delta-G solvation = -3346.931839 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.82323 -39.96323 -37.29067 -36.22313 -33.59565 -33.19808 -31.34884 -30.55766 -27.68018 -27.63918 -26.66404 -25.45468 -22.32298 -22.02179 -21.18952 -19.86162 -19.57727 -17.43897 -17.12109 -16.37898 -16.20231 -15.97777 -15.56344 -14.62996 -14.47180 -14.34604 -14.24777 -13.77837 -13.56471 -12.98901 -12.81710 -12.72863 -12.57205 -12.32577 -12.26380 -12.05769 -11.98898 -11.55278 -11.40611 -11.21034 -11.18465 -10.96364 -10.64883 -10.49748 -10.06615 -10.05522 -9.94845 -9.60562 -9.18973 -8.51438 -8.38097 -6.01925 -4.06813 1.40234 2.34591 2.61004 2.77687 3.31682 3.35009 3.38691 3.42637 4.17659 4.41103 4.44889 4.54169 4.69033 4.80133 4.90584 5.13271 5.17623 5.21042 5.25201 5.33539 5.38071 5.44568 5.48761 5.49792 5.57818 5.63064 5.71801 5.80652 5.89148 5.94670 5.99943 6.11150 6.18591 6.35562 6.59248 6.88452 7.02868 7.65848 7.72464 7.97382 8.22026 8.37917 9.00218 9.57261 11.09089 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.034415 B = 0.002632 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.396046 B =10637.554581 C =10939.607521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.012 3.988 3 C -0.146 4.146 4 C -0.140 4.140 5 C 0.010 3.990 6 C -0.211 4.211 7 C -0.178 4.178 8 C -0.020 4.020 9 C 0.146 3.854 10 O -0.362 6.362 11 C 0.459 3.541 12 O -0.504 6.504 13 C -0.102 4.102 14 C 0.033 3.967 15 C -0.528 4.528 16 H 0.059 0.941 17 C 0.059 3.941 18 N -0.890 5.890 19 Si 0.896 3.104 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 O -0.163 6.163 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.147 0.853 34 H 0.151 0.849 35 H 0.084 0.916 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.026 0.974 40 H 0.026 0.974 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.686 0.349 -17.874 27.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.012 3.988 3 C -0.203 4.203 4 C -0.197 4.197 5 C -0.041 4.041 6 C -0.230 4.230 7 C -0.197 4.197 8 C -0.069 4.069 9 C 0.072 3.928 10 O -0.280 6.280 11 C 0.303 3.697 12 O -0.390 6.390 13 C -0.140 4.140 14 C -0.004 4.004 15 C -0.567 4.567 16 H 0.077 0.923 17 C -0.143 4.143 18 N -0.528 5.528 19 Si 0.724 3.276 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.198 1.198 23 O -0.060 6.060 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.165 0.835 34 H 0.169 0.831 35 H 0.103 0.897 36 H 0.119 0.881 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.045 0.955 40 H 0.045 0.955 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.663 0.811 -17.344 26.989 hybrid contribution 0.816 -0.403 0.116 0.917 sum -19.847 0.408 -17.228 26.284 Atomic orbital electron populations 1.21918 0.92528 1.02612 1.02545 1.19171 0.95707 0.95298 0.88638 1.21873 1.01993 0.94046 1.02399 1.21922 1.01901 1.00396 0.95456 1.22400 0.96767 0.93315 0.91652 1.21477 1.06572 0.96277 0.98712 1.21641 1.01563 0.98602 0.97920 1.21822 1.03344 0.88653 0.93117 1.20963 0.78659 1.02994 0.90201 1.86656 1.18003 1.80239 1.43149 1.24847 0.89755 0.73539 0.81580 1.90645 1.79816 1.42319 1.26235 1.21796 0.84030 1.03360 1.04805 1.19033 0.93434 0.98585 0.89392 1.21152 0.92505 1.45683 0.97326 0.92285 1.25025 0.99069 0.95138 0.95114 1.69992 1.34808 1.46134 1.01855 0.86536 0.84875 0.78649 0.77583 1.20592 1.21181 1.19785 1.83966 1.54600 1.39576 1.27827 0.92120 0.91416 0.91985 0.91834 0.91757 0.92034 0.91971 0.91417 0.91915 0.83478 0.83131 0.89742 0.88100 0.88822 0.88856 0.95540 0.95517 0.92834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 8.35 37.16 0.31 -0.57 16 2 C 0.01 0.10 0.92 -155.66 -0.14 -0.05 16 3 C -0.15 -1.17 8.03 37.16 0.30 -0.87 16 4 C -0.14 -0.95 8.35 37.16 0.31 -0.64 16 5 C 0.01 0.11 5.68 -35.62 -0.20 -0.10 16 6 C -0.21 -2.26 10.16 -39.70 -0.40 -2.66 16 7 C -0.18 -2.13 10.81 -39.71 -0.43 -2.56 16 8 C -0.02 -0.27 6.96 -35.63 -0.25 -0.51 16 9 C 0.15 2.10 5.99 36.00 0.22 2.31 16 10 O -0.36 -6.25 10.20 -39.27 -0.40 -6.65 16 11 C 0.46 9.13 7.96 36.01 0.29 9.42 16 12 O -0.50 -11.40 15.73 -18.75 -0.29 -11.70 16 13 C -0.10 -2.11 5.75 -27.88 -0.16 -2.27 16 14 C 0.03 0.86 4.26 -27.88 -0.12 0.75 16 15 C -0.53 -14.82 9.11 -34.44 -0.31 -15.13 16 16 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -27.06 13.29 55.43 0.74 -26.32 16 19 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 23 O -0.16 -2.23 10.06 5.72 0.06 -2.17 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.36 7.99 -51.93 -0.41 -0.05 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.39 7.99 -51.93 -0.41 -0.02 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.15 1.22 8.06 -52.48 -0.42 0.79 16 34 H 0.15 1.54 8.06 -52.48 -0.42 1.11 16 35 H 0.08 1.19 8.13 -51.93 -0.42 0.77 16 36 H 0.10 1.31 8.13 -51.93 -0.42 0.89 16 37 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 38 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 39 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 40 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 41 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 351.83 15.07 5.30 5.30 Total: -1.00 -32.65 351.83 -7.02 -39.67 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -6.71 Total: -3.32 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: -0.70 Total: -11.30 kcal Atomic # 7 Polarization: -27.06 SS G_CDS: 0.74 Total: -26.32 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -0.64 Total: -20.52 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.65 -7.02 -39.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893469287.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.105 kcal (2) G-P(sol) polarization free energy of solvation -32.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds