Wall clock time and date at job start Tue Mar 31 2020 01:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47411 * 2 1 4 4 C 1.53003 * 109.47279 * 239.99790 * 2 1 3 5 5 C 1.50707 * 109.47137 * 119.99983 * 2 1 3 6 6 C 1.34516 * 125.78774 * 59.99909 * 5 2 1 7 7 C 1.41376 * 106.84089 * 179.97438 * 6 5 2 8 8 C 1.34515 * 106.84242 * 0.02562 * 7 6 5 9 9 C 1.50695 * 125.79319 * 179.73499 * 8 7 6 10 10 O 1.45201 * 109.47119 * 90.00242 * 9 8 7 11 11 C 1.34235 * 116.99938 * 180.02562 * 10 9 8 12 12 O 1.20823 * 119.99956 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99681 * 179.97438 * 11 10 9 14 14 C 1.53000 * 109.46944 * 179.97438 * 13 11 10 15 15 C 1.50701 * 109.46944 * 180.02562 * 14 13 11 16 16 H 1.07993 * 120.00298 * 359.97438 * 15 14 13 17 17 C 1.37882 * 119.99529 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00228 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99719 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47215 * 89.99623 * 19 17 15 21 21 H 1.48501 * 109.46814 * 209.99741 * 19 17 15 22 22 H 1.48499 * 109.46916 * 329.99809 * 19 17 15 23 23 O 1.34298 * 125.79155 * 239.97130 * 5 2 1 24 24 H 1.09005 * 109.46826 * 299.99801 * 1 2 3 25 25 H 1.08993 * 109.47282 * 59.99874 * 1 2 3 26 26 H 1.08997 * 109.46885 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47599 * 179.97438 * 3 2 1 28 28 H 1.09003 * 109.46974 * 300.00293 * 3 2 1 29 29 H 1.09005 * 109.46963 * 60.00283 * 3 2 1 30 30 H 1.09004 * 109.47007 * 300.00689 * 4 2 1 31 31 H 1.09003 * 109.46707 * 59.99951 * 4 2 1 32 32 H 1.08995 * 109.47001 * 179.97438 * 4 2 1 33 33 H 1.08004 * 126.58023 * 359.96223 * 6 5 2 34 34 H 1.08003 * 126.58479 * 179.97438 * 7 6 5 35 35 H 1.09004 * 109.47299 * 210.00077 * 9 8 7 36 36 H 1.09003 * 109.47154 * 330.00412 * 9 8 7 37 37 H 1.09006 * 109.47119 * 299.99295 * 13 11 10 38 38 H 1.09003 * 109.47573 * 59.99634 * 13 11 10 39 39 H 1.09004 * 109.47270 * 299.99816 * 14 13 11 40 40 H 1.08998 * 109.47212 * 60.00024 * 14 13 11 41 41 H 0.96999 * 119.99901 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0324 -0.7104 1.2305 6 6 1.7802 -1.9906 1.5578 7 6 2.4428 -2.2386 2.7818 8 6 3.0598 -1.0950 3.1296 9 6 3.8883 -0.8827 4.3704 10 8 5.2743 -1.2119 4.0891 11 6 6.1497 -1.0760 5.0976 12 8 5.7705 -0.6941 6.1794 13 6 7.6054 -1.3997 4.8804 14 6 8.3800 -1.1611 6.1781 15 6 9.8358 -1.4843 5.9608 16 1 10.1746 -1.8260 4.9941 17 6 10.7350 -1.3445 6.9967 18 7 10.3223 -0.9288 8.1742 19 14 12.5397 -1.7444 6.7272 20 1 13.2543 -0.5248 6.2717 21 1 13.1365 -2.2213 8.0006 22 1 12.6630 -2.8048 5.6950 23 8 2.8082 -0.1730 2.1860 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9563 0.8901 30 1 1.6766 -1.7490 -1.2492 31 1 1.6767 -0.2074 -2.1392 32 1 3.1300 -0.7209 -1.2494 33 1 1.1854 -2.6939 0.9939 34 1 2.4513 -3.1676 3.3325 35 1 3.8183 0.1601 4.6801 36 1 3.5173 -1.5248 5.1693 37 1 7.7051 -2.4440 4.5842 38 1 8.0069 -0.7593 4.0951 39 1 8.2802 -0.1168 6.4741 40 1 7.9787 -1.8013 6.9638 41 1 10.9550 -0.8302 8.9028 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893469287.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:59 Heat of formation + Delta-G solvation = -116.115783 kcal Electronic energy + Delta-G solvation = -21092.274912 eV Core-core repulsion = 17744.591271 eV Total energy + Delta-G solvation = -3347.683640 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.74423 -41.52177 -38.04835 -37.63621 -35.66198 -34.14812 -33.22069 -31.73535 -28.32975 -28.19063 -28.16882 -26.88239 -24.15062 -22.91718 -22.13974 -21.55004 -20.36683 -19.15682 -18.36239 -17.93861 -17.66614 -17.11103 -16.74847 -16.46690 -15.70685 -15.30826 -15.05597 -14.91441 -14.39210 -14.28247 -14.17474 -13.96845 -13.84025 -13.35865 -13.19590 -13.12811 -12.99637 -12.83288 -12.61512 -12.51277 -12.22315 -12.02559 -11.99369 -11.84894 -11.77827 -11.76514 -11.51714 -11.30507 -10.90449 -10.58098 -9.43852 -8.20435 -6.34170 0.40043 1.17123 1.38939 1.44012 1.45577 1.56803 1.70081 2.10010 2.43649 3.13386 3.35126 3.66544 3.83103 3.86673 3.96261 4.02717 4.07772 4.21646 4.25350 4.43138 4.45323 4.66838 4.71399 4.74063 4.84377 4.87330 4.89352 4.90054 4.96716 5.00435 5.09868 5.25539 5.27899 5.35036 5.37866 5.46390 5.53015 5.54424 5.80006 6.11408 6.12465 6.71928 6.84402 7.35997 8.92196 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.034415 B = 0.002632 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.396046 B =10637.554581 C =10939.607521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.009 3.991 3 C -0.146 4.146 4 C -0.137 4.137 5 C 0.008 3.992 6 C -0.217 4.217 7 C -0.170 4.170 8 C -0.053 4.053 9 C 0.144 3.856 10 O -0.357 6.357 11 C 0.469 3.531 12 O -0.539 6.539 13 C -0.094 4.094 14 C 0.038 3.962 15 C -0.544 4.544 16 H 0.077 0.923 17 C -0.004 4.004 18 N -0.935 5.935 19 Si 0.974 3.026 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.256 1.256 23 O -0.185 6.185 24 H 0.051 0.949 25 H 0.087 0.913 26 H 0.069 0.931 27 H 0.046 0.954 28 H 0.086 0.914 29 H 0.050 0.950 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.047 0.953 33 H 0.174 0.826 34 H 0.167 0.833 35 H 0.081 0.919 36 H 0.114 0.886 37 H 0.118 0.882 38 H 0.114 0.886 39 H -0.009 1.009 40 H -0.007 1.007 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.113 -0.681 -20.601 29.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.009 3.991 3 C -0.203 4.203 4 C -0.195 4.195 5 C -0.043 4.043 6 C -0.235 4.235 7 C -0.190 4.190 8 C -0.102 4.102 9 C 0.071 3.929 10 O -0.275 6.275 11 C 0.315 3.685 12 O -0.428 6.428 13 C -0.131 4.131 14 C 0.001 3.999 15 C -0.582 4.582 16 H 0.095 0.905 17 C -0.202 4.202 18 N -0.575 5.575 19 Si 0.798 3.202 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.180 1.180 23 O -0.082 6.082 24 H 0.070 0.930 25 H 0.106 0.894 26 H 0.088 0.912 27 H 0.065 0.935 28 H 0.105 0.895 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.067 0.933 33 H 0.192 0.808 34 H 0.185 0.815 35 H 0.100 0.900 36 H 0.132 0.868 37 H 0.136 0.864 38 H 0.132 0.868 39 H 0.009 0.991 40 H 0.011 0.989 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -21.108 -0.229 -20.110 29.155 hybrid contribution 0.815 -0.059 0.893 1.211 sum -20.293 -0.288 -19.216 27.949 Atomic orbital electron populations 1.21919 0.90856 1.03359 1.03148 1.19403 0.96933 0.94960 0.87813 1.21882 1.00953 0.94473 1.03012 1.21931 1.01013 1.01030 0.95480 1.23181 0.95527 0.93915 0.91660 1.21809 1.06707 0.96602 0.98400 1.21984 1.00285 0.98490 0.98199 1.21717 1.05103 0.89636 0.93724 1.21140 0.76997 1.03198 0.91557 1.86609 1.19403 1.79639 1.41804 1.24533 0.89940 0.72723 0.81347 1.90637 1.80436 1.44037 1.27705 1.21548 0.84172 1.05318 1.02065 1.18811 0.94184 0.95528 0.91387 1.21636 0.93237 1.45242 0.98100 0.90499 1.26100 1.04604 0.94810 0.94689 1.70155 1.36769 1.47533 1.03057 0.85311 0.78151 0.78945 0.77790 1.19744 1.21093 1.17995 1.83948 1.55488 1.40259 1.28496 0.93003 0.89373 0.91176 0.93466 0.89470 0.93103 0.91175 0.89300 0.93336 0.80829 0.81517 0.90036 0.86841 0.86437 0.86768 0.99099 0.98878 0.92721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.35 71.98 0.60 -0.77 16 2 C 0.01 0.13 0.92 -52.93 -0.05 0.08 16 3 C -0.15 -2.19 8.03 71.98 0.58 -1.61 16 4 C -0.14 -1.54 8.35 71.98 0.60 -0.94 16 5 C 0.01 0.16 5.68 24.84 0.14 0.30 16 6 C -0.22 -4.20 10.16 22.19 0.23 -3.97 16 7 C -0.17 -3.85 10.81 22.19 0.24 -3.61 16 8 C -0.05 -1.42 6.96 24.83 0.17 -1.25 16 9 C 0.14 4.19 5.99 71.23 0.43 4.62 16 10 O -0.36 -12.24 10.20 -51.47 -0.53 -12.76 16 11 C 0.47 18.86 7.96 71.24 0.57 19.43 16 12 O -0.54 -25.23 15.73 21.97 0.35 -24.88 16 13 C -0.09 -3.84 5.75 29.85 0.17 -3.67 16 14 C 0.04 2.08 4.26 29.85 0.13 2.21 16 15 C -0.54 -30.57 9.11 25.60 0.23 -30.34 16 16 H 0.08 3.95 7.74 -2.91 -0.02 3.93 16 17 C 0.00 -0.24 5.46 84.66 0.46 0.22 16 18 N -0.94 -58.33 13.29 21.45 0.28 -58.04 16 19 Si 0.97 43.89 29.54 68.60 2.03 45.92 16 20 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 21 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 22 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 23 O -0.18 -5.03 10.06 -2.45 -0.02 -5.05 16 24 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 25 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.07 0.61 7.99 -2.39 -0.02 0.59 16 27 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.07 0.68 7.99 -2.38 -0.02 0.66 16 31 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.17 2.32 8.06 -2.91 -0.02 2.30 16 34 H 0.17 3.08 8.06 -2.91 -0.02 3.06 16 35 H 0.08 2.39 8.13 -2.39 -0.02 2.37 16 36 H 0.11 2.97 8.13 -2.39 -0.02 2.95 16 37 H 0.12 4.27 8.14 -2.38 -0.02 4.25 16 38 H 0.11 4.21 8.14 -2.39 -0.02 4.19 16 39 H -0.01 -0.57 8.10 -2.39 -0.02 -0.59 16 40 H -0.01 -0.44 8.10 -2.39 -0.02 -0.46 16 41 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -72.10 351.83 7.60 -64.51 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: 0.99 Total: 9.62 kcal Atomic # 6 Polarization: -23.80 SS G_CDS: 4.50 Total: -19.31 kcal Atomic # 7 Polarization: -58.33 SS G_CDS: 0.28 Total: -58.04 kcal Atomic # 8 Polarization: -42.49 SS G_CDS: -0.20 Total: -42.69 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -72.10 7.60 -64.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893469287.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.608 kcal (2) G-P(sol) polarization free energy of solvation -72.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds