Wall clock time and date at job start Tue Mar 31 2020 01:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 2 8 8 Si 1.86789 * 120.00458 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47356 * 89.99481 * 8 6 4 10 10 H 1.48501 * 109.47162 * 209.99853 * 8 6 4 11 11 H 1.48503 * 109.47180 * 329.99546 * 8 6 4 12 12 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 13 13 O 1.20820 * 119.99828 * 240.00261 * 12 2 1 14 14 O 1.34229 * 119.99602 * 60.00329 * 12 2 1 15 15 C 1.45196 * 116.99841 * 180.02562 * 14 12 2 16 16 C 1.50696 * 109.47357 * 179.97438 * 15 14 12 17 17 C 1.34515 * 125.78941 * 89.71369 * 16 15 14 18 18 C 1.41389 * 106.84000 * 179.89309 * 17 16 15 19 19 C 1.34514 * 106.83739 * 0.36871 * 18 17 16 20 20 C 1.50706 * 125.78709 * 179.74842 * 19 18 17 21 21 C 1.53000 * 109.47114 * 60.00467 * 20 19 18 22 22 C 1.53003 * 109.47263 * 180.02562 * 20 19 18 23 23 C 1.52992 * 109.47306 * 300.00296 * 20 19 18 24 24 O 1.34303 * 108.42442 * 359.77565 * 19 18 17 25 25 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 26 26 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 28 28 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 29 29 H 1.09008 * 109.47201 * 299.99837 * 15 14 12 30 30 H 1.09005 * 109.47388 * 59.99354 * 15 14 12 31 31 H 1.07990 * 126.58203 * 0.02562 * 17 16 15 32 32 H 1.07996 * 126.57877 * 180.16731 * 18 17 16 33 33 H 1.09008 * 109.46970 * 59.99759 * 21 20 19 34 34 H 1.09000 * 109.47157 * 179.97438 * 21 20 19 35 35 H 1.09006 * 109.47006 * 300.00150 * 21 20 19 36 36 H 1.08996 * 109.46932 * 59.99904 * 22 20 19 37 37 H 1.09000 * 109.47326 * 180.02562 * 22 20 19 38 38 H 1.09008 * 109.47001 * 300.00352 * 22 20 19 39 39 H 1.09009 * 109.47537 * 59.99991 * 23 20 19 40 40 H 1.09007 * 109.47380 * 179.97438 * 23 20 19 41 41 H 1.08999 * 109.47827 * 300.00087 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1372 -0.8596 3.5565 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8727 2.6997 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1765 1.4920 12 6 2.0323 -0.7105 -1.2305 13 8 2.7269 -1.6929 -1.1195 14 8 1.7081 -0.2519 -2.4496 15 6 2.2267 -0.9864 -3.5896 16 6 1.7619 -0.3299 -4.8639 17 6 2.4076 0.6464 -5.5267 18 6 1.6225 0.9606 -6.6599 19 6 0.5401 0.1632 -6.6173 20 6 -0.5832 0.1476 -7.6219 21 6 -0.0263 -0.1985 -9.0043 22 6 -1.6196 -0.9007 -7.2121 23 6 -1.2444 1.5265 -7.6691 24 8 0.6298 -0.6163 -5.5273 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.9026 -0.5284 4.4375 29 1 3.3163 -0.9862 -3.5569 30 1 1.8625 -2.0133 -3.5565 31 1 3.3465 1.1013 -5.2481 32 1 1.8471 1.7013 -7.4131 33 1 0.4449 -1.1809 -8.9707 34 1 -0.8387 -0.2102 -9.7308 35 1 0.7119 0.5486 -9.2961 36 1 -2.0162 -0.6537 -6.2273 37 1 -2.4317 -0.9123 -7.9389 38 1 -1.1487 -1.8832 -7.1781 39 1 -0.5063 2.2737 -7.9609 40 1 -2.0566 1.5154 -8.3961 41 1 -1.6412 1.7732 -6.6843 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893469290.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:54:34 Heat of formation + Delta-G solvation = -102.409196 kcal Electronic energy + Delta-G solvation = -21774.556732 eV Core-core repulsion = 18427.467454 eV Total energy + Delta-G solvation = -3347.089278 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.72702 -41.47220 -38.00877 -37.55972 -36.00015 -34.13131 -33.47577 -31.67146 -28.23262 -28.16057 -27.36917 -27.19380 -25.09301 -22.90208 -22.15008 -21.65071 -20.35314 -19.06381 -18.27532 -18.13867 -17.51390 -17.09609 -17.02665 -16.31229 -15.56672 -15.26740 -15.03118 -14.90670 -14.64214 -14.27481 -14.16189 -13.98300 -13.82269 -13.53118 -13.24414 -13.15511 -13.04579 -12.86858 -12.63109 -12.60750 -12.28320 -12.19765 -11.98507 -11.81598 -11.75135 -11.53506 -11.31843 -11.20675 -10.88368 -10.79011 -9.41916 -8.33294 -6.43891 0.42534 1.28272 1.35518 1.39573 1.42790 1.50659 1.72545 2.16630 2.30676 2.99784 3.37068 3.68262 3.84377 3.92810 3.97185 4.05132 4.09661 4.23748 4.26600 4.33312 4.50905 4.67736 4.70759 4.72371 4.74793 4.85084 4.89876 4.91035 4.92228 4.97358 5.01521 5.10788 5.26100 5.28011 5.32555 5.35941 5.38672 5.43097 5.54609 6.13132 6.19158 6.68066 6.88484 7.20997 8.83421 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.029293 B = 0.003496 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.623381 B = 8006.804094 C = 8404.314439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.020 3.980 3 H 0.081 0.919 4 C -0.534 4.534 5 H 0.040 0.960 6 C 0.018 3.982 7 N -0.944 5.944 8 Si 0.953 3.047 9 H -0.258 1.258 10 H -0.293 1.293 11 H -0.234 1.234 12 C 0.482 3.518 13 O -0.535 6.535 14 O -0.357 6.357 15 C 0.143 3.857 16 C -0.050 4.050 17 C -0.171 4.171 18 C -0.215 4.215 19 C 0.006 3.994 20 C 0.010 3.990 21 C -0.136 4.136 22 C -0.146 4.146 23 C -0.137 4.137 24 O -0.184 6.184 25 H 0.078 0.922 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.271 0.729 29 H 0.111 0.889 30 H 0.079 0.921 31 H 0.166 0.834 32 H 0.175 0.825 33 H 0.051 0.949 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.046 0.954 37 H 0.087 0.913 38 H 0.050 0.950 39 H 0.069 0.931 40 H 0.088 0.912 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.623 7.330 -27.348 29.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.001 3.999 3 H 0.099 0.901 4 C -0.571 4.571 5 H 0.058 0.942 6 C -0.180 4.180 7 N -0.582 5.582 8 Si 0.777 3.223 9 H -0.183 1.183 10 H -0.221 1.221 11 H -0.158 1.158 12 C 0.327 3.673 13 O -0.423 6.423 14 O -0.274 6.274 15 C 0.070 3.930 16 C -0.099 4.099 17 C -0.190 4.190 18 C -0.234 4.234 19 C -0.044 4.044 20 C 0.009 3.991 21 C -0.193 4.193 22 C -0.203 4.203 23 C -0.195 4.195 24 O -0.081 6.081 25 H 0.097 0.903 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.129 0.871 30 H 0.098 0.902 31 H 0.184 0.816 32 H 0.192 0.808 33 H 0.070 0.930 34 H 0.106 0.894 35 H 0.088 0.912 36 H 0.065 0.935 37 H 0.106 0.894 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.107 0.893 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.604 6.783 -27.081 28.935 hybrid contribution 0.306 -0.080 0.916 0.970 sum -7.298 6.703 -26.165 27.978 Atomic orbital electron populations 1.22013 0.93908 1.02084 1.01750 1.19095 0.95876 0.97721 0.87191 0.90128 1.21010 1.32804 1.13525 0.89808 0.94211 1.25890 0.97055 1.00467 0.94618 1.70034 1.46906 1.42474 0.98832 0.85799 0.79077 0.79135 0.78292 1.18309 1.22070 1.15753 1.24284 0.76308 0.82486 0.84226 1.90547 1.37091 1.27508 1.87175 1.86606 1.70340 1.55772 1.14730 1.21112 0.99439 0.94453 0.78034 1.21693 0.88524 1.03266 0.96445 1.21976 1.02968 0.97557 0.96547 1.21794 0.95426 1.04705 1.01432 1.23192 0.99518 0.92934 0.88761 1.19397 0.89918 0.98400 0.91345 1.21920 1.02193 1.01905 0.93250 1.21885 0.98756 0.97789 1.01907 1.21930 1.01333 0.93557 1.02630 1.83949 1.37965 1.53376 1.32845 0.90284 0.92759 0.92939 0.91969 0.87091 0.90243 0.81616 0.80783 0.93013 0.89360 0.91162 0.93476 0.89443 0.93120 0.91177 0.89276 0.93353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.74 8.60 71.98 0.62 -5.12 16 2 C 0.02 0.97 2.33 -12.28 -0.03 0.94 16 3 H 0.08 3.58 7.20 -2.39 -0.02 3.57 16 4 C -0.53 -31.57 8.96 25.60 0.23 -31.34 16 5 H 0.04 2.73 7.00 -2.91 -0.02 2.71 16 6 C 0.02 1.03 5.45 84.66 0.46 1.49 16 7 N -0.94 -59.39 13.96 21.45 0.30 -59.09 16 8 Si 0.95 42.68 24.37 68.60 1.67 44.35 16 9 H -0.26 -10.79 6.87 99.48 0.68 -10.10 16 10 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 11 H -0.23 -9.33 6.53 99.48 0.65 -8.68 16 12 C 0.48 22.05 7.25 71.24 0.52 22.57 16 13 O -0.53 -27.83 15.21 21.98 0.33 -27.50 16 14 O -0.36 -13.60 10.11 -51.41 -0.52 -14.12 16 15 C 0.14 4.55 5.99 71.23 0.43 4.97 16 16 C -0.05 -1.44 6.96 24.83 0.17 -1.27 16 17 C -0.17 -4.13 10.81 22.19 0.24 -3.89 16 18 C -0.21 -4.39 10.16 22.19 0.23 -4.17 16 19 C 0.01 0.14 5.68 24.83 0.14 0.28 16 20 C 0.01 0.14 0.92 -52.93 -0.05 0.10 16 21 C -0.14 -1.46 8.35 71.98 0.60 -0.86 16 22 C -0.15 -2.31 8.03 71.98 0.58 -1.73 16 23 C -0.14 -1.64 8.34 71.98 0.60 -1.04 16 24 O -0.18 -5.26 10.06 -2.50 -0.03 -5.29 16 25 H 0.08 2.69 8.11 -2.39 -0.02 2.67 16 26 H 0.05 2.19 3.27 -2.39 -0.01 2.18 16 27 H 0.05 2.17 8.14 -2.38 -0.02 2.15 16 28 H 0.27 15.75 8.31 -92.70 -0.77 14.98 16 29 H 0.11 3.22 8.13 -2.38 -0.02 3.21 16 30 H 0.08 2.55 8.13 -2.38 -0.02 2.53 16 31 H 0.17 3.34 8.06 -2.92 -0.02 3.32 16 32 H 0.17 2.48 8.06 -2.91 -0.02 2.46 16 33 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 34 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.07 0.65 7.99 -2.38 -0.02 0.63 16 36 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 39 H 0.07 0.73 7.99 -2.38 -0.02 0.71 16 40 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 41 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -72.95 339.45 7.42 -65.53 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 0.93 Total: 15.17 kcal Atomic # 6 Polarization: -23.79 SS G_CDS: 4.73 Total: -19.06 kcal Atomic # 7 Polarization: -59.39 SS G_CDS: 0.30 Total: -59.09 kcal Atomic # 8 Polarization: -46.69 SS G_CDS: -0.21 Total: -46.90 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 1.67 Total: 44.35 kcal Total: -72.95 7.42 -65.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893469290.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.877 kcal (2) G-P(sol) polarization free energy of solvation -72.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds