Wall clock time and date at job start Tue Mar 31 2020 01:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47343 * 2 1 4 4 C 1.50696 * 109.47370 * 239.99657 * 2 1 3 5 5 H 1.08002 * 119.99735 * 275.10554 * 4 2 1 6 6 C 1.37882 * 120.00191 * 95.10082 * 4 2 1 7 7 N 1.31516 * 119.99799 * 184.91816 * 6 4 2 8 8 Si 1.86793 * 119.99746 * 4.91383 * 6 4 2 9 9 H 1.48501 * 109.47274 * 84.82527 * 8 6 4 10 10 H 1.48500 * 109.46924 * 204.82309 * 8 6 4 11 11 H 1.48505 * 109.47464 * 324.82367 * 8 6 4 12 12 C 1.50708 * 109.47155 * 119.99651 * 2 1 3 13 13 O 1.20827 * 119.99847 * 120.00325 * 12 2 1 14 14 O 1.34222 * 119.99761 * 299.99586 * 12 2 1 15 15 C 1.45199 * 117.00023 * 180.02562 * 14 12 2 16 16 C 1.50697 * 109.47455 * 180.02562 * 15 14 12 17 17 C 1.34521 * 125.79133 * 90.00173 * 16 15 14 18 18 C 1.41377 * 106.84034 * 180.02562 * 17 16 15 19 19 C 1.34515 * 106.84433 * 359.97438 * 18 17 16 20 20 C 1.50702 * 125.79144 * 180.02562 * 19 18 17 21 21 C 1.52995 * 109.47206 * 60.02077 * 20 19 18 22 22 C 1.52992 * 109.47046 * 180.02562 * 20 19 18 23 23 C 1.53007 * 109.46656 * 300.02529 * 20 19 18 24 24 O 1.34296 * 108.41887 * 0.02562 * 19 18 17 25 25 H 1.09002 * 109.47037 * 175.06951 * 1 2 3 26 26 H 1.09008 * 109.46835 * 295.06064 * 1 2 3 27 27 H 1.08990 * 109.47010 * 55.06218 * 1 2 3 28 28 H 0.96998 * 119.99561 * 180.02562 * 7 6 4 29 29 H 1.09006 * 109.47294 * 60.00319 * 15 14 12 30 30 H 1.08996 * 109.47226 * 300.00483 * 15 14 12 31 31 H 1.08000 * 126.57739 * 0.05152 * 17 16 15 32 32 H 1.08001 * 126.57733 * 180.02562 * 18 17 16 33 33 H 1.09005 * 109.47229 * 60.00300 * 21 20 19 34 34 H 1.09005 * 109.47090 * 180.02562 * 21 20 19 35 35 H 1.08996 * 109.47579 * 300.00207 * 21 20 19 36 36 H 1.09001 * 109.47447 * 59.99622 * 22 20 19 37 37 H 1.09005 * 109.46848 * 179.97438 * 22 20 19 38 38 H 1.08997 * 109.47075 * 299.99683 * 22 20 19 39 39 H 1.08996 * 109.47326 * 60.00285 * 23 20 19 40 40 H 1.09003 * 109.46708 * 180.02562 * 23 20 19 41 41 H 1.09001 * 109.46959 * 299.99840 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.1339 -1.7857 -1.2294 6 6 2.3623 0.0122 -2.3574 7 7 2.7080 -0.6131 -3.4615 8 14 2.3181 1.8791 -2.3158 9 1 3.6039 2.3929 -1.7790 10 1 2.1125 2.4001 -3.6911 11 1 1.2029 2.3287 -1.4443 12 6 2.0323 -0.7104 1.2306 13 8 2.7270 -1.6927 1.1197 14 8 1.7081 -0.2516 2.4496 15 6 2.2277 -0.9854 3.5897 16 6 1.7628 -0.3288 4.8640 17 6 0.6296 -0.6167 5.5292 18 6 0.5914 0.2316 6.6595 19 6 1.7038 0.9868 6.6178 20 6 2.0924 2.0398 7.6234 21 6 2.2335 1.3982 9.0052 22 6 3.4259 2.6682 7.2143 23 6 1.0119 3.1222 7.6717 24 8 2.4094 0.6431 5.5281 25 1 -0.3633 -1.0239 -0.0883 26 1 -0.3633 0.4353 0.9310 27 1 -0.3633 0.5885 -0.8424 28 1 2.9404 -0.1047 -4.2542 29 1 3.3173 -0.9843 3.5567 30 1 1.8643 -2.0125 3.5570 31 1 -0.1091 -1.3546 5.2530 32 1 -0.1820 0.2661 7.4125 33 1 3.0031 0.6270 8.9708 34 1 2.5141 2.1599 9.7326 35 1 1.2834 0.9505 9.2966 36 1 3.3254 3.1254 6.2299 37 1 3.7067 3.4302 7.9414 38 1 4.1955 1.8972 7.1799 39 1 0.0619 2.6745 7.9632 40 1 1.2932 3.8841 8.3987 41 1 0.9114 3.5793 6.6873 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893469291.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:54:37 Heat of formation + Delta-G solvation = -91.758063 kcal Electronic energy + Delta-G solvation = -21750.973494 eV Core-core repulsion = 18404.346084 eV Total energy + Delta-G solvation = -3346.627410 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.71679 -39.65883 -37.21402 -35.87905 -33.83373 -33.08302 -31.48862 -30.45771 -27.62442 -27.57769 -26.13468 -25.32345 -23.06311 -21.95931 -21.10115 -19.72448 -19.49009 -17.33885 -16.98616 -16.50862 -15.89349 -15.82172 -15.55244 -14.66399 -14.39998 -14.24621 -14.01403 -13.49235 -13.12061 -12.91646 -12.82807 -12.67285 -12.56804 -12.47059 -12.20146 -12.00155 -11.84755 -11.49428 -11.36036 -11.32279 -11.14806 -11.11766 -10.79740 -10.42106 -10.19364 -9.93199 -9.88303 -9.34401 -9.25186 -8.66884 -8.38933 -6.17209 -4.18979 1.52673 2.46213 2.72752 3.14179 3.24148 3.30452 3.31858 3.63858 4.27131 4.31229 4.49472 4.60338 4.80014 4.89734 5.00433 5.15899 5.25022 5.26402 5.33503 5.38186 5.43486 5.50662 5.55080 5.56186 5.69505 5.78683 5.89751 5.90285 5.94968 6.03276 6.08599 6.15308 6.43684 6.45942 6.48389 6.78504 7.03065 7.13823 7.18944 7.46575 8.35656 8.72920 8.95772 9.40357 10.95124 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.026466 B = 0.003600 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.691877 B = 7776.723145 C = 8192.353804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.026 3.974 3 H 0.065 0.935 4 C -0.507 4.507 5 H 0.088 0.912 6 C 0.077 3.923 7 N -0.888 5.888 8 Si 0.869 3.131 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.261 1.261 12 C 0.464 3.536 13 O -0.500 6.500 14 O -0.365 6.365 15 C 0.142 3.858 16 C -0.014 4.014 17 C -0.182 4.182 18 C -0.210 4.210 19 C 0.006 3.994 20 C 0.013 3.987 21 C -0.138 4.138 22 C -0.146 4.146 23 C -0.139 4.139 24 O -0.164 6.164 25 H 0.052 0.948 26 H 0.038 0.962 27 H 0.058 0.942 28 H 0.268 0.732 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.150 0.850 32 H 0.146 0.854 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.665 6.525 24.091 25.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.006 3.994 3 H 0.083 0.917 4 C -0.544 4.544 5 H 0.106 0.894 6 C -0.126 4.126 7 N -0.524 5.524 8 Si 0.695 3.305 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.185 1.185 12 C 0.307 3.693 13 O -0.385 6.385 14 O -0.284 6.284 15 C 0.069 3.931 16 C -0.064 4.064 17 C -0.201 4.201 18 C -0.229 4.229 19 C -0.045 4.045 20 C 0.012 3.988 21 C -0.196 4.196 22 C -0.203 4.203 23 C -0.197 4.197 24 O -0.060 6.060 25 H 0.071 0.929 26 H 0.057 0.943 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.100 0.900 30 H 0.116 0.884 31 H 0.168 0.832 32 H 0.164 0.836 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.098 6.345 23.771 24.798 hybrid contribution -0.037 0.695 -0.058 0.699 sum -3.135 7.040 23.713 24.934 Atomic orbital electron populations 1.21930 0.95728 1.01561 1.00049 1.19200 0.94876 0.97082 0.88222 0.91683 1.20756 1.44245 0.96268 0.93145 0.89351 1.24994 0.94103 0.98331 0.95215 1.69870 1.44879 1.35987 1.01697 0.86977 0.79436 0.86227 0.77816 1.19810 1.20903 1.18536 1.25306 0.77139 0.83606 0.83219 1.90554 1.35315 1.26139 1.86482 1.86707 1.70496 1.56121 1.15045 1.20931 0.99674 0.93706 0.78837 1.21920 0.94749 0.93635 0.96109 1.21619 0.98151 1.03582 0.96736 1.21454 0.99973 1.00148 1.01350 1.22367 0.92665 1.00032 0.89459 1.19150 0.97004 0.91322 0.91281 1.21915 1.02550 1.00920 0.94185 1.21872 0.95461 1.00929 1.02049 1.21920 0.97628 0.97378 1.02731 1.83968 1.45580 1.44666 1.31781 0.92869 0.94334 0.92287 0.92235 0.90020 0.88371 0.83200 0.83582 0.92127 0.91487 0.92008 0.91840 0.91821 0.92025 0.91988 0.91483 0.91933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 9.14 37.16 0.34 -2.46 16 2 C 0.03 0.62 2.40 -92.92 -0.22 0.40 16 3 H 0.07 1.53 5.29 -51.93 -0.27 1.25 16 4 C -0.51 -14.42 8.36 -34.44 -0.29 -14.71 16 5 H 0.09 2.81 7.62 -52.49 -0.40 2.41 16 6 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 7 N -0.89 -26.87 13.96 55.43 0.77 -26.09 16 8 Si 0.87 20.75 26.99 -169.99 -4.59 16.16 16 9 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.26 -5.81 6.82 56.52 0.39 -5.43 16 12 C 0.46 10.67 7.25 36.01 0.26 10.93 16 13 O -0.50 -12.71 15.52 -18.75 -0.29 -13.00 16 14 O -0.36 -7.20 10.01 -39.24 -0.39 -7.59 16 15 C 0.14 2.32 5.99 36.00 0.22 2.54 16 16 C -0.01 -0.21 6.96 -35.62 -0.25 -0.46 16 17 C -0.18 -2.39 10.81 -39.70 -0.43 -2.82 16 18 C -0.21 -2.45 10.16 -39.70 -0.40 -2.85 16 19 C 0.01 0.07 5.68 -35.62 -0.20 -0.13 16 20 C 0.01 0.11 0.92 -155.66 -0.14 -0.03 16 21 C -0.14 -0.98 8.35 37.15 0.31 -0.67 16 22 C -0.15 -1.30 8.03 37.15 0.30 -1.00 16 23 C -0.14 -1.06 8.35 37.16 0.31 -0.75 16 24 O -0.16 -2.44 10.06 5.72 0.06 -2.38 16 25 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.04 0.70 8.00 -51.92 -0.42 0.28 16 27 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.08 1.31 8.13 -51.93 -0.42 0.89 16 30 H 0.10 1.46 8.13 -51.93 -0.42 1.03 16 31 H 0.15 1.70 8.06 -52.49 -0.42 1.28 16 32 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.40 7.99 -51.93 -0.41 -0.01 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.44 7.99 -51.93 -0.41 0.02 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 346.29 15.07 5.22 5.22 Total: -1.00 -32.13 346.29 -6.09 -38.22 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -6.57 Total: -0.61 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -0.30 Total: -9.92 kcal Atomic # 7 Polarization: -26.87 SS G_CDS: 0.77 Total: -26.09 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: -0.63 Total: -22.98 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.59 Total: 16.16 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.13 -6.09 -38.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893469291.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.535 kcal (2) G-P(sol) polarization free energy of solvation -32.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds