Wall clock time and date at job start Tue Mar 31 2020 01:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47343 * 2 1 4 4 C 1.50696 * 109.47370 * 239.99657 * 2 1 3 5 5 H 1.08002 * 119.99735 * 275.10554 * 4 2 1 6 6 C 1.37882 * 120.00191 * 95.10082 * 4 2 1 7 7 N 1.31516 * 119.99799 * 184.91816 * 6 4 2 8 8 Si 1.86793 * 119.99746 * 4.91383 * 6 4 2 9 9 H 1.48501 * 109.47274 * 84.82527 * 8 6 4 10 10 H 1.48500 * 109.46924 * 204.82309 * 8 6 4 11 11 H 1.48505 * 109.47464 * 324.82367 * 8 6 4 12 12 C 1.50708 * 109.47155 * 119.99651 * 2 1 3 13 13 O 1.20827 * 119.99847 * 120.00325 * 12 2 1 14 14 O 1.34222 * 119.99761 * 299.99586 * 12 2 1 15 15 C 1.45199 * 117.00023 * 180.02562 * 14 12 2 16 16 C 1.50697 * 109.47455 * 180.02562 * 15 14 12 17 17 C 1.34521 * 125.79133 * 90.00173 * 16 15 14 18 18 C 1.41377 * 106.84034 * 180.02562 * 17 16 15 19 19 C 1.34515 * 106.84433 * 359.97438 * 18 17 16 20 20 C 1.50702 * 125.79144 * 180.02562 * 19 18 17 21 21 C 1.52995 * 109.47206 * 60.02077 * 20 19 18 22 22 C 1.52992 * 109.47046 * 180.02562 * 20 19 18 23 23 C 1.53007 * 109.46656 * 300.02529 * 20 19 18 24 24 O 1.34296 * 108.41887 * 0.02562 * 19 18 17 25 25 H 1.09002 * 109.47037 * 175.06951 * 1 2 3 26 26 H 1.09008 * 109.46835 * 295.06064 * 1 2 3 27 27 H 1.08990 * 109.47010 * 55.06218 * 1 2 3 28 28 H 0.96998 * 119.99561 * 180.02562 * 7 6 4 29 29 H 1.09006 * 109.47294 * 60.00319 * 15 14 12 30 30 H 1.08996 * 109.47226 * 300.00483 * 15 14 12 31 31 H 1.08000 * 126.57739 * 0.05152 * 17 16 15 32 32 H 1.08001 * 126.57733 * 180.02562 * 18 17 16 33 33 H 1.09005 * 109.47229 * 60.00300 * 21 20 19 34 34 H 1.09005 * 109.47090 * 180.02562 * 21 20 19 35 35 H 1.08996 * 109.47579 * 300.00207 * 21 20 19 36 36 H 1.09001 * 109.47447 * 59.99622 * 22 20 19 37 37 H 1.09005 * 109.46848 * 179.97438 * 22 20 19 38 38 H 1.08997 * 109.47075 * 299.99683 * 22 20 19 39 39 H 1.08996 * 109.47326 * 60.00285 * 23 20 19 40 40 H 1.09003 * 109.46708 * 180.02562 * 23 20 19 41 41 H 1.09001 * 109.46959 * 299.99840 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.1339 -1.7857 -1.2294 6 6 2.3623 0.0122 -2.3574 7 7 2.7080 -0.6131 -3.4615 8 14 2.3181 1.8791 -2.3158 9 1 3.6039 2.3929 -1.7790 10 1 2.1125 2.4001 -3.6911 11 1 1.2029 2.3287 -1.4443 12 6 2.0323 -0.7104 1.2306 13 8 2.7270 -1.6927 1.1197 14 8 1.7081 -0.2516 2.4496 15 6 2.2277 -0.9854 3.5897 16 6 1.7628 -0.3288 4.8640 17 6 0.6296 -0.6167 5.5292 18 6 0.5914 0.2316 6.6595 19 6 1.7038 0.9868 6.6178 20 6 2.0924 2.0398 7.6234 21 6 2.2335 1.3982 9.0052 22 6 3.4259 2.6682 7.2143 23 6 1.0119 3.1222 7.6717 24 8 2.4094 0.6431 5.5281 25 1 -0.3633 -1.0239 -0.0883 26 1 -0.3633 0.4353 0.9310 27 1 -0.3633 0.5885 -0.8424 28 1 2.9404 -0.1047 -4.2542 29 1 3.3173 -0.9843 3.5567 30 1 1.8643 -2.0125 3.5570 31 1 -0.1091 -1.3546 5.2530 32 1 -0.1820 0.2661 7.4125 33 1 3.0031 0.6270 8.9708 34 1 2.5141 2.1599 9.7326 35 1 1.2834 0.9505 9.2966 36 1 3.3254 3.1254 6.2299 37 1 3.7067 3.4302 7.9414 38 1 4.1955 1.8972 7.1799 39 1 0.0619 2.6745 7.9632 40 1 1.2932 3.8841 8.3987 41 1 0.9114 3.5793 6.6873 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893469291.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:54:36 Heat of formation + Delta-G solvation = -109.760312 kcal Electronic energy + Delta-G solvation = -21751.754130 eV Core-core repulsion = 18404.346084 eV Total energy + Delta-G solvation = -3347.408047 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.72578 -41.41578 -37.99412 -37.51660 -35.83300 -34.12904 -33.48930 -31.65236 -28.23847 -28.16289 -27.40137 -27.22093 -24.81733 -22.90052 -22.13149 -21.53123 -20.35407 -19.33133 -18.29846 -18.17874 -17.28726 -17.14490 -16.97977 -16.13709 -15.69010 -15.09890 -14.91433 -14.72646 -14.59606 -14.35777 -14.22253 -13.94926 -13.82527 -13.24472 -13.17942 -13.10177 -13.00782 -12.95997 -12.66363 -12.61238 -12.28853 -12.20245 -11.98918 -11.80816 -11.80361 -11.75090 -11.34721 -11.17884 -10.87918 -10.80326 -9.41530 -8.35019 -6.44258 0.43418 1.29858 1.36541 1.38560 1.45000 1.48792 1.73040 2.18359 2.30400 3.02167 3.38039 3.68959 3.84341 3.96239 3.96787 4.07158 4.10202 4.26529 4.28564 4.31772 4.64891 4.67671 4.72070 4.74339 4.81418 4.84752 4.90054 4.90977 4.97018 5.01452 5.05349 5.10468 5.26575 5.30653 5.35468 5.38452 5.45692 5.47954 5.55124 6.13511 6.17930 6.64597 6.93554 7.19892 8.81733 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.026466 B = 0.003600 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.691877 B = 7776.723145 C = 8192.353804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.019 3.981 3 H 0.078 0.922 4 C -0.519 4.519 5 H 0.034 0.966 6 C 0.018 3.982 7 N -0.940 5.940 8 Si 0.938 3.062 9 H -0.268 1.268 10 H -0.277 1.277 11 H -0.228 1.228 12 C 0.471 3.529 13 O -0.535 6.535 14 O -0.359 6.359 15 C 0.142 3.858 16 C -0.050 4.050 17 C -0.171 4.171 18 C -0.214 4.214 19 C 0.005 3.995 20 C 0.009 3.991 21 C -0.135 4.135 22 C -0.146 4.146 23 C -0.137 4.137 24 O -0.185 6.185 25 H 0.046 0.954 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.272 0.728 29 H 0.077 0.923 30 H 0.111 0.889 31 H 0.167 0.833 32 H 0.175 0.825 33 H 0.050 0.950 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.045 0.955 37 H 0.087 0.913 38 H 0.049 0.951 39 H 0.070 0.930 40 H 0.088 0.912 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.210 9.086 26.993 28.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.000 4.000 3 H 0.096 0.904 4 C -0.556 4.556 5 H 0.052 0.948 6 C -0.180 4.180 7 N -0.579 5.579 8 Si 0.760 3.240 9 H -0.193 1.193 10 H -0.203 1.203 11 H -0.151 1.151 12 C 0.316 3.684 13 O -0.423 6.423 14 O -0.277 6.277 15 C 0.068 3.932 16 C -0.099 4.099 17 C -0.190 4.190 18 C -0.233 4.233 19 C -0.045 4.045 20 C 0.009 3.991 21 C -0.192 4.192 22 C -0.204 4.204 23 C -0.194 4.194 24 O -0.083 6.083 25 H 0.066 0.934 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.128 0.872 31 H 0.184 0.816 32 H 0.193 0.807 33 H 0.070 0.930 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.064 0.936 37 H 0.106 0.894 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.107 0.893 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.669 8.908 26.712 28.543 hybrid contribution 0.457 -0.177 -0.810 0.946 sum -4.212 8.732 25.902 27.657 Atomic orbital electron populations 1.21828 0.92885 1.01802 1.02013 1.19186 0.97010 0.96963 0.86858 0.90398 1.20821 1.44890 0.94220 0.95709 0.94762 1.25954 0.93372 1.04385 0.94335 1.70028 1.46542 1.38532 1.02749 0.85875 0.80683 0.78695 0.78765 1.19276 1.20263 1.15051 1.24940 0.76368 0.82857 0.84248 1.90543 1.36901 1.27682 1.87221 1.86634 1.70072 1.56163 1.14817 1.21100 0.99544 0.94290 0.78225 1.21717 0.96246 0.95556 0.96430 1.21967 0.97276 1.03221 0.96515 1.21792 1.00530 0.99463 1.01487 1.23195 0.92421 1.00106 0.88809 1.19397 0.97300 0.91019 0.91352 1.21916 1.02828 1.01268 0.93233 1.21885 0.95422 1.01168 1.01882 1.21930 0.97543 0.97344 1.02613 1.83947 1.46511 1.44969 1.32851 0.93439 0.91178 0.91578 0.91930 0.90457 0.87154 0.81552 0.80731 0.93033 0.89358 0.91124 0.93556 0.89419 0.93142 0.91110 0.89276 0.93398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.06 9.14 71.98 0.66 -4.40 16 2 C 0.02 0.92 2.40 -12.29 -0.03 0.89 16 3 H 0.08 3.49 5.29 -2.39 -0.01 3.48 16 4 C -0.52 -30.44 8.36 25.60 0.21 -30.23 16 5 H 0.03 2.32 7.62 -2.91 -0.02 2.29 16 6 C 0.02 1.04 5.47 84.66 0.46 1.51 16 7 N -0.94 -58.79 13.96 21.45 0.30 -58.49 16 8 Si 0.94 42.14 26.99 68.60 1.85 43.99 16 9 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 10 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 11 H -0.23 -8.98 6.82 99.48 0.68 -8.30 16 12 C 0.47 21.80 7.25 71.24 0.52 22.32 16 13 O -0.54 -28.16 15.52 21.96 0.34 -27.82 16 14 O -0.36 -13.92 10.01 -51.34 -0.51 -14.44 16 15 C 0.14 4.61 5.99 71.23 0.43 5.03 16 16 C -0.05 -1.47 6.96 24.83 0.17 -1.30 16 17 C -0.17 -4.14 10.81 22.19 0.24 -3.90 16 18 C -0.21 -4.42 10.16 22.19 0.23 -4.19 16 19 C 0.01 0.12 5.68 24.83 0.14 0.26 16 20 C 0.01 0.15 0.92 -52.93 -0.05 0.10 16 21 C -0.14 -1.49 8.35 71.98 0.60 -0.89 16 22 C -0.15 -2.38 8.03 71.98 0.58 -1.80 16 23 C -0.14 -1.67 8.35 71.98 0.60 -1.07 16 24 O -0.19 -5.42 10.06 -2.46 -0.02 -5.44 16 25 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.07 2.33 8.00 -2.38 -0.02 2.31 16 27 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 28 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 29 H 0.08 2.55 8.13 -2.38 -0.02 2.53 16 30 H 0.11 3.27 8.13 -2.39 -0.02 3.25 16 31 H 0.17 3.36 8.06 -2.91 -0.02 3.34 16 32 H 0.18 2.50 8.06 -2.91 -0.02 2.48 16 33 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 34 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 35 H 0.07 0.66 7.99 -2.39 -0.02 0.65 16 36 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 38 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.07 0.74 7.99 -2.39 -0.02 0.72 16 40 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -72.66 346.29 7.68 -64.98 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 0.97 Total: 14.91 kcal Atomic # 6 Polarization: -22.44 SS G_CDS: 4.76 Total: -17.68 kcal Atomic # 7 Polarization: -58.79 SS G_CDS: 0.30 Total: -58.49 kcal Atomic # 8 Polarization: -47.50 SS G_CDS: -0.20 Total: -47.70 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 1.85 Total: 43.99 kcal Total: -72.66 7.68 -64.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893469291.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.780 kcal (2) G-P(sol) polarization free energy of solvation -72.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds