Wall clock time and date at job start Tue Mar 31 2020 01:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35725 * 116.99924 * 2 1 4 4 N 1.32214 * 119.69892 * 359.97438 * 3 2 1 5 5 C 1.31968 * 121.67641 * 180.02562 * 4 3 2 6 6 C 1.38070 * 120.87294 * 359.73910 * 5 4 3 7 7 C 1.38788 * 119.30824 * 0.51338 * 6 5 4 8 8 C 1.50702 * 120.76980 * 179.77473 * 7 6 5 9 9 N 1.46899 * 109.47189 * 255.82937 * 8 7 6 10 10 C 1.46897 * 111.00058 * 185.44830 * 9 8 7 11 11 C 1.53004 * 109.47078 * 183.61900 * 10 9 8 12 12 C 1.50708 * 115.54770 * 294.52953 * 11 10 9 13 13 H 1.08002 * 119.99281 * 92.58676 * 12 11 10 14 14 C 1.37873 * 120.00001 * 272.58675 * 12 11 10 15 15 N 1.31518 * 119.99618 * 183.57356 * 14 12 11 16 16 Si 1.86797 * 120.00032 * 3.57924 * 14 12 11 17 17 H 1.48498 * 109.47066 * 266.36625 * 16 14 12 18 18 H 1.48497 * 109.47453 * 26.37216 * 16 14 12 19 19 H 1.48502 * 109.47044 * 146.37393 * 16 14 12 20 20 C 1.52993 * 117.50294 * 80.20067 * 11 10 9 21 21 C 1.53003 * 117.50181 * 148.86462 * 11 10 9 22 22 C 1.38580 * 118.46387 * 359.50163 * 7 6 5 23 23 F 1.35101 * 120.46262 * 180.22996 * 22 7 6 24 24 H 1.09000 * 109.46557 * 60.00077 * 1 2 3 25 25 H 1.08999 * 109.46830 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46862 * 299.99874 * 1 2 3 27 27 H 1.07995 * 119.56349 * 179.97438 * 5 4 3 28 28 H 1.08000 * 120.34581 * 180.28283 * 6 5 4 29 29 H 1.09000 * 109.47170 * 135.83113 * 8 7 6 30 30 H 1.08997 * 109.47035 * 15.82572 * 8 7 6 31 31 H 1.00906 * 110.99883 * 61.49356 * 9 8 7 32 32 H 1.08995 * 109.47479 * 63.61643 * 10 9 8 33 33 H 1.08997 * 109.47467 * 303.61399 * 10 9 8 34 34 H 0.97002 * 120.00029 * 179.97438 * 15 14 12 35 35 H 1.08997 * 117.50524 * 215.00288 * 20 11 10 36 36 H 1.08998 * 117.49850 * 0.02562 * 20 11 10 37 37 H 1.09000 * 117.49145 * 359.97278 * 21 11 10 38 38 H 1.08998 * 117.49767 * 144.97137 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 7 1.3193 2.3144 -0.0005 5 6 1.8775 3.5102 -0.0010 6 6 3.2510 3.6509 0.0043 7 6 4.0502 2.5163 -0.0005 8 6 5.5528 2.6317 0.0000 9 7 6.0670 2.3369 -1.3441 10 6 7.5358 2.3129 -1.3523 11 6 8.0343 2.0932 -2.7820 12 6 7.6935 0.7574 -3.3910 13 1 6.7936 0.6453 -3.9775 14 6 8.5306 -0.3212 -3.1995 15 7 8.2705 -1.4681 -3.7884 16 14 10.0339 -0.1539 -2.1034 17 1 11.2140 0.2001 -2.9325 18 1 9.7972 0.9130 -1.0980 19 1 10.2857 -1.4419 -1.4085 20 6 8.0666 3.3066 -3.7133 21 6 9.3733 2.7247 -3.1683 22 6 3.4346 1.2748 0.0000 23 9 4.1736 0.1438 0.0001 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.2516 4.3903 -0.0019 28 1 3.6987 4.6337 0.0085 29 1 5.9715 1.9215 0.7131 30 1 5.8393 3.6441 0.2846 31 1 5.7123 2.9970 -2.0198 32 1 7.8896 1.5022 -0.7155 33 1 7.9168 3.2626 -0.9767 34 1 8.8595 -2.2269 -3.6540 35 1 7.8414 3.1389 -4.7665 36 1 7.7331 4.2616 -3.3074 37 1 9.8988 3.2970 -2.4038 38 1 10.0079 2.1738 -3.8625 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894198266.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:23:24 Heat of formation + Delta-G solvation = -10.333226 kcal Electronic energy + Delta-G solvation = -21744.811306 eV Core-core repulsion = 18310.547187 eV Total energy + Delta-G solvation = -3434.264118 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.50602 -40.54349 -38.21489 -37.40149 -35.10157 -32.11159 -31.88213 -30.53438 -27.73761 -26.82948 -25.46597 -23.62058 -23.33447 -21.84139 -21.38985 -18.97808 -18.03679 -17.78981 -17.18271 -16.42349 -16.33433 -15.40733 -14.99282 -14.90369 -14.69420 -14.34244 -14.14572 -13.88990 -13.52852 -13.13976 -13.07012 -12.68358 -12.55655 -12.20810 -11.84590 -11.82413 -11.54864 -11.30333 -11.03232 -10.54976 -10.43900 -10.09024 -9.86329 -9.66057 -9.46824 -9.00719 -8.46562 -8.44343 -8.38679 -7.80227 -5.96396 -3.95908 0.95050 1.02444 2.89013 3.35728 3.45078 3.47582 3.52709 4.09486 4.31809 4.42072 4.52785 4.73990 4.82872 4.93425 5.12795 5.16969 5.21417 5.30604 5.34924 5.50079 5.60900 5.72178 5.81453 5.82952 6.01852 6.04674 6.14633 6.18992 6.33777 6.43382 6.48899 6.74364 7.07854 7.11106 7.18725 7.61279 7.61968 7.81502 7.95572 8.65347 9.09293 9.66817 11.16425 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.021195 B = 0.004816 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.765896 B = 5812.032386 C = 6545.146303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.300 6.300 3 C 0.289 3.711 4 N -0.519 5.519 5 C 0.120 3.880 6 C -0.178 4.178 7 C -0.037 4.037 8 C 0.096 3.904 9 N -0.659 5.659 10 C 0.100 3.900 11 C 0.006 3.994 12 C -0.464 4.464 13 H 0.078 0.922 14 C 0.075 3.925 15 N -0.901 5.901 16 Si 0.879 3.121 17 H -0.282 1.282 18 H -0.261 1.261 19 H -0.295 1.295 20 C -0.184 4.184 21 C -0.200 4.200 22 C 0.066 3.934 23 F -0.107 7.107 24 H 0.060 0.940 25 H 0.097 0.903 26 H 0.058 0.942 27 H 0.164 0.836 28 H 0.143 0.857 29 H 0.086 0.914 30 H 0.042 0.958 31 H 0.339 0.661 32 H 0.071 0.929 33 H 0.005 0.995 34 H 0.262 0.738 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.872 10.843 9.983 18.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.206 6.206 3 C 0.108 3.892 4 N -0.243 5.243 5 C -0.035 4.035 6 C -0.199 4.199 7 C -0.046 4.046 8 C -0.033 4.033 9 N -0.289 5.289 10 C -0.028 4.028 11 C 0.005 3.995 12 C -0.501 4.501 13 H 0.096 0.904 14 C -0.126 4.126 15 N -0.539 5.539 16 Si 0.707 3.293 17 H -0.209 1.209 18 H -0.185 1.185 19 H -0.222 1.222 20 C -0.221 4.221 21 C -0.238 4.238 22 C 0.043 3.957 23 F -0.085 7.085 24 H 0.078 0.922 25 H 0.115 0.885 26 H 0.076 0.924 27 H 0.181 0.819 28 H 0.161 0.839 29 H 0.105 0.895 30 H 0.060 0.940 31 H 0.157 0.843 32 H 0.090 0.910 33 H 0.023 0.977 34 H 0.072 0.928 35 H 0.105 0.895 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.632 9.551 10.038 18.749 hybrid contribution 1.819 0.920 0.590 2.123 sum -10.812 10.471 10.629 18.426 Atomic orbital electron populations 1.22878 0.77061 1.03096 1.02335 1.86341 1.22996 1.23573 1.87722 1.19890 0.88038 0.85851 0.95412 1.67356 1.39772 0.98407 1.18806 1.22346 0.92749 0.93584 0.94825 1.21847 0.94242 0.98928 1.04908 1.20319 0.97613 0.90691 0.95938 1.20827 0.87980 1.00107 0.94388 1.60207 1.09540 1.55830 1.03363 1.21791 0.85316 0.97428 0.98283 1.19434 0.94875 0.94258 0.90928 1.20132 1.08836 0.89987 1.31193 0.90437 1.24933 0.97538 0.95072 0.95105 1.69898 1.38520 1.02033 1.43458 0.86875 0.83536 0.77135 0.81741 1.20861 1.18508 1.22202 1.22806 1.02086 0.97040 1.00213 1.22980 0.91760 1.05324 1.03768 1.17457 0.86176 0.83960 1.08078 1.91609 1.75837 1.47608 1.93446 0.92167 0.88481 0.92356 0.81851 0.83900 0.89533 0.94000 0.84302 0.91043 0.97744 0.92820 0.89518 0.91476 0.91227 0.89357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.38 101.05 1.05 1.48 16 2 O -0.30 -4.55 10.35 -18.88 -0.20 -4.75 16 3 C 0.29 4.46 7.50 -17.07 -0.13 4.33 16 4 N -0.52 -6.89 9.22 -13.28 -0.12 -7.01 16 5 C 0.12 1.27 11.17 -17.55 -0.20 1.07 16 6 C -0.18 -1.93 9.76 -39.44 -0.39 -2.32 16 7 C -0.04 -0.52 5.48 -104.29 -0.57 -1.09 16 8 C 0.10 1.43 5.59 -4.98 -0.03 1.40 16 9 N -0.66 -12.19 6.39 -115.06 -0.74 -12.93 16 10 C 0.10 2.03 5.10 -3.82 -0.02 2.01 16 11 C 0.01 0.14 0.90 -155.66 -0.14 0.00 16 12 C -0.46 -13.01 9.33 -34.44 -0.32 -13.33 16 13 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 14 C 0.07 2.17 5.47 -17.82 -0.10 2.08 16 15 N -0.90 -28.08 13.96 55.43 0.77 -27.31 16 16 Si 0.88 21.98 24.96 -169.99 -4.24 17.73 16 17 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.26 -6.09 5.65 56.52 0.32 -5.77 16 19 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 20 C -0.18 -3.64 9.96 -26.70 -0.27 -3.91 16 21 C -0.20 -4.21 7.64 -26.69 -0.20 -4.42 16 22 C 0.07 1.10 7.30 -39.14 -0.29 0.82 16 23 F -0.11 -2.11 16.70 2.25 0.04 -2.07 16 24 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 25 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 27 H 0.16 1.11 8.06 -52.49 -0.42 0.69 16 28 H 0.14 1.13 8.05 -52.49 -0.42 0.70 16 29 H 0.09 1.34 8.09 -51.93 -0.42 0.92 16 30 H 0.04 0.51 8.02 -51.93 -0.42 0.10 16 31 H 0.34 5.89 8.74 -39.29 -0.34 5.54 16 32 H 0.07 1.58 6.57 -51.93 -0.34 1.24 16 33 H 0.00 0.08 8.09 -51.93 -0.42 -0.34 16 34 H 0.26 7.70 8.31 -40.82 -0.34 7.37 16 35 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 36 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 38 H 0.09 1.97 7.35 -51.93 -0.38 1.59 16 LS Contribution 325.12 15.07 4.90 4.90 Total: -1.00 -32.74 325.12 -6.52 -39.26 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -5.34 Total: 4.05 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: -1.59 Total: -11.88 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: -0.08 Total: -47.25 kcal Atomic # 8 Polarization: -4.55 SS G_CDS: -0.20 Total: -4.75 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.04 Total: -2.07 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.24 Total: 17.73 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.74 -6.52 -39.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894198266.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.927 kcal (2) G-P(sol) polarization free energy of solvation -32.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds