Wall clock time and date at job start Tue Mar 31 2020 01:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35725 * 116.99924 * 2 1 4 4 N 1.32214 * 119.69892 * 359.97438 * 3 2 1 5 5 C 1.31968 * 121.67641 * 180.02562 * 4 3 2 6 6 C 1.38070 * 120.87294 * 359.73910 * 5 4 3 7 7 C 1.38788 * 119.30824 * 0.51338 * 6 5 4 8 8 C 1.50702 * 120.76980 * 179.77473 * 7 6 5 9 9 N 1.46899 * 109.47189 * 255.82937 * 8 7 6 10 10 C 1.46897 * 111.00058 * 185.44830 * 9 8 7 11 11 C 1.53004 * 109.47078 * 183.61900 * 10 9 8 12 12 C 1.50708 * 115.54770 * 294.52953 * 11 10 9 13 13 H 1.08002 * 119.99281 * 92.58676 * 12 11 10 14 14 C 1.37873 * 120.00001 * 272.58675 * 12 11 10 15 15 N 1.31518 * 119.99618 * 183.57356 * 14 12 11 16 16 Si 1.86797 * 120.00032 * 3.57924 * 14 12 11 17 17 H 1.48498 * 109.47066 * 266.36625 * 16 14 12 18 18 H 1.48497 * 109.47453 * 26.37216 * 16 14 12 19 19 H 1.48502 * 109.47044 * 146.37393 * 16 14 12 20 20 C 1.52993 * 117.50294 * 80.20067 * 11 10 9 21 21 C 1.53003 * 117.50181 * 148.86462 * 11 10 9 22 22 C 1.38580 * 118.46387 * 359.50163 * 7 6 5 23 23 F 1.35101 * 120.46262 * 180.22996 * 22 7 6 24 24 H 1.09000 * 109.46557 * 60.00077 * 1 2 3 25 25 H 1.08999 * 109.46830 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46862 * 299.99874 * 1 2 3 27 27 H 1.07995 * 119.56349 * 179.97438 * 5 4 3 28 28 H 1.08000 * 120.34581 * 180.28283 * 6 5 4 29 29 H 1.09000 * 109.47170 * 135.83113 * 8 7 6 30 30 H 1.08997 * 109.47035 * 15.82572 * 8 7 6 31 31 H 1.00906 * 110.99883 * 61.49356 * 9 8 7 32 32 H 1.08995 * 109.47479 * 63.61643 * 10 9 8 33 33 H 1.08997 * 109.47467 * 303.61399 * 10 9 8 34 34 H 0.97002 * 120.00029 * 179.97438 * 15 14 12 35 35 H 1.08997 * 117.50524 * 215.00288 * 20 11 10 36 36 H 1.08998 * 117.49850 * 0.02562 * 20 11 10 37 37 H 1.09000 * 117.49145 * 359.97278 * 21 11 10 38 38 H 1.08998 * 117.49767 * 144.97137 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 7 1.3193 2.3144 -0.0005 5 6 1.8775 3.5102 -0.0010 6 6 3.2510 3.6509 0.0043 7 6 4.0502 2.5163 -0.0005 8 6 5.5528 2.6317 0.0000 9 7 6.0670 2.3369 -1.3441 10 6 7.5358 2.3129 -1.3523 11 6 8.0343 2.0932 -2.7820 12 6 7.6935 0.7574 -3.3910 13 1 6.7936 0.6453 -3.9775 14 6 8.5306 -0.3212 -3.1995 15 7 8.2705 -1.4681 -3.7884 16 14 10.0339 -0.1539 -2.1034 17 1 11.2140 0.2001 -2.9325 18 1 9.7972 0.9130 -1.0980 19 1 10.2857 -1.4419 -1.4085 20 6 8.0666 3.3066 -3.7133 21 6 9.3733 2.7247 -3.1683 22 6 3.4346 1.2748 0.0000 23 9 4.1736 0.1438 0.0001 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.2516 4.3903 -0.0019 28 1 3.6987 4.6337 0.0085 29 1 5.9715 1.9215 0.7131 30 1 5.8393 3.6441 0.2846 31 1 5.7123 2.9970 -2.0198 32 1 7.8896 1.5022 -0.7155 33 1 7.9168 3.2626 -0.9767 34 1 8.8595 -2.2269 -3.6540 35 1 7.8414 3.1389 -4.7665 36 1 7.7331 4.2616 -3.3074 37 1 9.8988 3.2970 -2.4038 38 1 10.0079 2.1738 -3.8625 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894198266.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:23:23 Heat of formation + Delta-G solvation = -36.046047 kcal Electronic energy + Delta-G solvation = -21745.926297 eV Core-core repulsion = 18310.547187 eV Total energy + Delta-G solvation = -3435.379110 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.82142 -41.54851 -39.37203 -38.89817 -36.41658 -34.14621 -33.21480 -31.50648 -28.86603 -28.11117 -27.29753 -25.04832 -24.35352 -23.28408 -22.65071 -20.80285 -19.15151 -18.88239 -18.38543 -18.18653 -17.48619 -17.01963 -16.35922 -16.17504 -15.76751 -15.62890 -15.52736 -15.26665 -14.92844 -14.72041 -14.33901 -14.14555 -13.73848 -13.63269 -13.39680 -13.06097 -12.80027 -12.62520 -12.38714 -12.23063 -12.11959 -11.86879 -11.51505 -10.87003 -10.86864 -10.69944 -10.52903 -10.21972 -9.43365 -9.12783 -8.20524 -6.23516 -0.07426 0.02767 1.36402 1.39725 1.51491 1.93232 2.42557 2.53800 3.06997 3.14485 3.15836 3.32135 3.49701 3.70693 3.88913 3.94831 4.21821 4.38935 4.40495 4.41171 4.46473 4.50659 4.57656 4.62236 4.67062 4.71278 4.84967 4.88651 4.89512 5.08580 5.13517 5.38585 5.45650 5.57085 5.78663 6.12381 6.22029 6.41318 6.63286 6.65292 6.83537 7.43013 8.96773 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.021195 B = 0.004816 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.765896 B = 5812.032386 C = 6545.146303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.329 6.329 3 C 0.273 3.727 4 N -0.524 5.524 5 C 0.131 3.869 6 C -0.161 4.161 7 C -0.042 4.042 8 C 0.100 3.900 9 N -0.687 5.687 10 C 0.111 3.889 11 C -0.025 4.025 12 C -0.457 4.457 13 H 0.022 0.978 14 C 0.009 3.991 15 N -0.960 5.960 16 Si 0.942 3.058 17 H -0.271 1.271 18 H -0.228 1.228 19 H -0.305 1.305 20 C -0.161 4.161 21 C -0.195 4.195 22 C 0.017 3.983 23 F -0.141 7.141 24 H 0.061 0.939 25 H 0.118 0.882 26 H 0.067 0.933 27 H 0.212 0.788 28 H 0.186 0.814 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.345 0.655 32 H 0.045 0.955 33 H 0.043 0.957 34 H 0.260 0.740 35 H 0.071 0.929 36 H 0.110 0.890 37 H 0.105 0.895 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.799 15.305 11.701 22.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.237 6.237 3 C 0.094 3.906 4 N -0.248 5.248 5 C -0.025 4.025 6 C -0.181 4.181 7 C -0.051 4.051 8 C -0.029 4.029 9 N -0.319 5.319 10 C -0.017 4.017 11 C -0.026 4.026 12 C -0.495 4.495 13 H 0.040 0.960 14 C -0.186 4.186 15 N -0.601 5.601 16 Si 0.767 3.233 17 H -0.197 1.197 18 H -0.150 1.150 19 H -0.233 1.233 20 C -0.198 4.198 21 C -0.233 4.233 22 C -0.006 4.006 23 F -0.120 7.120 24 H 0.079 0.921 25 H 0.136 0.864 26 H 0.086 0.914 27 H 0.228 0.772 28 H 0.204 0.796 29 H 0.088 0.912 30 H 0.101 0.899 31 H 0.164 0.836 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.128 0.872 37 H 0.123 0.877 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.578 14.047 11.762 22.223 hybrid contribution 1.595 -0.371 -0.025 1.638 sum -10.983 13.676 11.737 21.105 Atomic orbital electron populations 1.23122 0.75015 1.04737 1.02796 1.86296 1.25229 1.24301 1.87862 1.19985 0.87873 0.86578 0.96172 1.67474 1.39662 0.98753 1.18937 1.23244 0.93543 0.93873 0.91810 1.22291 0.94058 0.99391 1.02407 1.20479 0.97686 0.90791 0.96118 1.20837 0.88181 1.01778 0.92058 1.60027 1.08911 1.57295 1.05666 1.21505 0.86393 0.98297 0.95549 1.19340 0.97563 0.92630 0.93084 1.20322 1.06342 0.93090 1.29779 0.95954 1.25856 1.01307 0.94588 0.96864 1.70083 1.40495 1.03287 1.46274 0.85854 0.79495 0.77549 0.80425 1.19708 1.15028 1.23305 1.22833 1.00700 0.97316 0.98967 1.23022 0.91299 1.04885 1.04072 1.18015 0.86968 0.84098 1.11532 1.91505 1.76684 1.49548 1.94214 0.92055 0.86394 0.91383 0.77165 0.79631 0.91197 0.89854 0.83590 0.93611 0.93864 0.93109 0.91030 0.87224 0.87721 0.91313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.79 10.38 113.37 1.18 1.96 16 2 O -0.33 -10.44 10.35 -90.48 -0.94 -11.38 16 3 C 0.27 8.57 7.50 84.84 0.64 9.20 16 4 N -0.52 -12.99 9.22 -308.77 -2.85 -15.83 16 5 C 0.13 2.23 11.17 84.63 0.95 3.18 16 6 C -0.16 -2.81 9.76 22.36 0.22 -2.59 16 7 C -0.04 -1.12 5.48 -19.65 -0.11 -1.23 16 8 C 0.10 2.74 5.59 85.56 0.48 3.22 16 9 N -0.69 -24.42 6.39 -517.95 -3.31 -27.73 16 10 C 0.11 4.21 5.10 86.31 0.44 4.65 16 11 C -0.03 -1.10 0.90 -52.93 -0.05 -1.15 16 12 C -0.46 -26.57 9.33 25.60 0.24 -26.33 16 13 H 0.02 1.49 8.06 -2.91 -0.02 1.47 16 14 C 0.01 0.55 5.47 84.65 0.46 1.01 16 15 N -0.96 -63.25 13.96 21.45 0.30 -62.95 16 16 Si 0.94 45.85 24.96 68.60 1.71 47.56 16 17 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 18 H -0.23 -9.79 5.65 99.48 0.56 -9.23 16 19 H -0.31 -15.27 7.11 99.48 0.71 -14.56 16 20 C -0.16 -5.87 9.96 30.62 0.30 -5.57 16 21 C -0.20 -7.53 7.64 30.62 0.23 -7.30 16 22 C 0.02 0.57 7.30 22.56 0.16 0.73 16 23 F -0.14 -6.00 16.70 44.97 0.75 -5.25 16 24 H 0.06 1.24 8.10 -2.39 -0.02 1.22 16 25 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.07 1.26 8.10 -2.39 -0.02 1.24 16 27 H 0.21 1.57 8.06 -2.91 -0.02 1.54 16 28 H 0.19 1.65 8.05 -2.91 -0.02 1.63 16 29 H 0.07 2.13 8.09 -2.39 -0.02 2.11 16 30 H 0.08 1.60 8.02 -2.39 -0.02 1.59 16 31 H 0.35 11.22 8.74 -89.69 -0.78 10.43 16 32 H 0.05 1.94 6.57 -2.39 -0.02 1.93 16 33 H 0.04 1.31 8.09 -2.39 -0.02 1.30 16 34 H 0.26 16.19 8.31 -92.71 -0.77 15.42 16 35 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 36 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 37 H 0.10 3.35 8.14 -2.39 -0.02 3.33 16 38 H 0.07 2.93 7.35 -2.39 -0.02 2.91 16 Total: -1.00 -78.64 325.12 0.96 -77.68 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 0.14 Total: 18.12 kcal Atomic # 6 Polarization: -25.37 SS G_CDS: 5.14 Total: -20.22 kcal Atomic # 7 Polarization: -100.65 SS G_CDS: -5.86 Total: -106.51 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: -0.94 Total: -11.38 kcal Atomic # 9 Polarization: -6.00 SS G_CDS: 0.75 Total: -5.25 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.71 Total: 47.56 kcal Total: -78.64 0.96 -77.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894198266.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.637 kcal (2) G-P(sol) polarization free energy of solvation -78.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds