Wall clock time and date at job start Tue Mar 31 2020 02:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99835 * 2 1 4 4 H 1.48491 * 109.47277 * 270.00398 * 3 2 1 5 5 H 1.48505 * 109.46623 * 30.00189 * 3 2 1 6 6 H 1.48498 * 109.46946 * 149.99837 * 3 2 1 7 7 C 1.37873 * 119.99936 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00283 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99763 * 179.97438 * 7 2 1 10 10 N 1.46500 * 109.46880 * 179.97438 * 9 7 2 11 11 C 1.34776 * 119.99615 * 180.02562 * 10 9 7 12 12 O 1.21587 * 120.00426 * 0.02562 * 11 10 9 13 13 N 1.34784 * 119.99998 * 179.97438 * 11 10 9 14 14 C 1.46493 * 119.99956 * 180.02562 * 13 11 10 15 15 C 1.53004 * 109.47121 * 180.02562 * 14 13 11 16 16 C 1.53111 * 120.23660 * 21.87812 * 15 14 13 17 17 C 1.52900 * 60.74744 * 247.86079 * 16 15 14 18 18 H 1.08999 * 119.71191 * 113.11434 * 17 16 15 19 19 C 1.54468 * 118.39089 * 269.77481 * 17 16 15 20 20 O 1.44597 * 105.16126 * 39.82193 * 19 17 16 21 21 C 1.43345 * 105.22491 * 38.92368 * 20 19 17 22 22 C 1.52794 * 115.73929 * 90.15650 * 21 20 19 23 23 C 1.53964 * 86.78300 * 92.96847 * 22 21 20 24 24 C 1.52941 * 115.70808 * 191.22181 * 21 20 19 25 25 H 0.96997 * 120.00075 * 0.02562 * 1 2 3 26 26 H 1.09007 * 109.46756 * 60.00126 * 9 7 2 27 27 H 1.08998 * 109.47355 * 299.99813 * 9 7 2 28 28 H 0.96990 * 120.00360 * 359.97438 * 10 9 7 29 29 H 0.96991 * 119.99392 * 359.97438 * 13 11 10 30 30 H 1.08997 * 109.48091 * 59.99720 * 14 13 11 31 31 H 1.09008 * 109.47065 * 299.99669 * 14 13 11 32 32 H 1.08999 * 117.42520 * 140.15396 * 16 15 14 33 33 H 1.09004 * 117.36896 * 355.58857 * 16 15 14 34 34 H 1.09000 * 110.30468 * 280.90228 * 19 17 16 35 35 H 1.08999 * 110.38801 * 158.78989 * 19 17 16 36 36 H 1.09000 * 113.66342 * 338.49913 * 22 21 20 37 37 H 1.08998 * 113.74648 * 207.44923 * 22 21 20 38 38 H 1.09002 * 113.58788 * 139.28598 * 23 22 21 39 39 H 1.08995 * 113.58487 * 270.01911 * 23 22 21 40 40 H 1.09004 * 113.65783 * 152.55754 * 24 21 20 41 41 H 1.08995 * 113.71247 * 21.46113 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6526 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 7 3.9999 -2.5752 -0.0010 11 6 5.3249 -2.8214 -0.0009 12 8 6.1151 -1.8973 -0.0005 13 7 5.7743 -4.0921 -0.0003 14 6 7.2146 -4.3597 0.0003 15 6 7.4525 -5.8712 0.0003 16 6 6.3600 -6.8237 -0.4932 17 6 6.7373 -6.8231 0.9886 18 1 6.0166 -6.4771 1.7294 19 6 7.8537 -7.7797 1.4626 20 8 8.8549 -7.7385 0.4201 21 6 8.9058 -6.3686 0.0009 22 6 9.9029 -5.4831 0.7468 23 6 10.9084 -5.8257 -0.3677 24 6 9.6970 -6.0954 -1.2791 25 1 -0.4850 0.8400 -0.0004 26 1 3.8752 -0.6803 0.8889 27 1 3.8745 -0.6800 -0.8911 28 1 3.3696 -3.3124 -0.0002 29 1 5.1440 -4.8293 0.0005 30 1 7.6655 -3.9206 0.8902 31 1 7.6660 -3.9213 -0.8897 32 1 6.6729 -7.6800 -1.0906 33 1 5.3999 -6.3861 -0.7669 34 1 7.4634 -8.7915 1.5724 35 1 8.2755 -7.4331 2.4060 36 1 10.1857 -5.8709 1.7254 37 1 9.6210 -4.4306 0.7731 38 1 11.5130 -4.9764 -0.6859 39 1 11.5040 -6.7145 -0.1596 40 1 9.3558 -5.2158 -1.8249 41 1 9.8156 -6.9716 -1.9165 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894485859.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:40 Heat of formation + Delta-G solvation = -13.698245 kcal Electronic energy + Delta-G solvation = -22075.175729 eV Core-core repulsion = 18764.225998 eV Total energy + Delta-G solvation = -3310.949732 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.62019 -39.27748 -37.10330 -35.74670 -34.26202 -33.23546 -32.27489 -28.78855 -27.71496 -26.86283 -25.66431 -24.90686 -22.08500 -21.45305 -20.46632 -20.16447 -19.07360 -18.38694 -16.69752 -16.31227 -16.05945 -15.90452 -15.49951 -15.13880 -14.89717 -14.40241 -14.22782 -13.60686 -13.38651 -13.25888 -13.01145 -12.78259 -12.58982 -12.51801 -12.33672 -12.07195 -11.71400 -11.23145 -11.05365 -10.98815 -10.78238 -10.76016 -10.42733 -10.02351 -9.96247 -9.64127 -9.61042 -9.46043 -8.86589 -8.74659 -8.02804 -6.20911 -4.22898 3.07256 3.18479 3.28322 3.35392 3.37521 3.43636 3.78327 4.06980 4.26961 4.34352 4.39871 4.42026 4.55259 4.58236 4.72563 4.89339 4.92447 5.01190 5.14758 5.23931 5.33665 5.45949 5.46339 5.47701 5.60172 5.63991 5.66890 5.75525 5.78751 5.82176 5.96269 5.99594 6.59782 6.71773 6.73000 7.11418 7.22884 7.39217 7.54451 8.27560 8.67281 8.80461 9.18383 9.40442 10.91077 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.033828 B = 0.003370 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.525843 B = 8307.031026 C = 8841.676684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.543 4.543 8 H 0.079 0.921 9 C 0.238 3.762 10 N -0.722 5.722 11 C 0.695 3.305 12 O -0.603 6.603 13 N -0.756 5.756 14 C 0.191 3.809 15 C -0.166 4.166 16 C -0.125 4.125 17 C -0.198 4.198 18 H 0.126 0.874 19 C 0.074 3.926 20 O -0.347 6.347 21 C 0.121 3.879 22 C -0.153 4.153 23 C -0.136 4.136 24 C -0.124 4.124 25 H 0.268 0.732 26 H 0.023 0.977 27 H 0.019 0.981 28 H 0.392 0.608 29 H 0.391 0.609 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.100 0.900 33 H 0.107 0.893 34 H 0.095 0.905 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.097 0.903 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.098 0.902 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.889 -16.625 0.783 24.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.126 4.126 3 Si 0.704 3.296 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.581 4.581 8 H 0.097 0.903 9 C 0.116 3.884 10 N -0.374 5.374 11 C 0.395 3.605 12 O -0.482 6.482 13 N -0.415 5.415 14 C 0.066 3.934 15 C -0.167 4.167 16 C -0.162 4.162 17 C -0.216 4.216 18 H 0.144 0.856 19 C -0.002 4.002 20 O -0.266 6.266 21 C 0.080 3.920 22 C -0.190 4.190 23 C -0.174 4.174 24 C -0.162 4.162 25 H 0.077 0.923 26 H 0.041 0.959 27 H 0.037 0.963 28 H 0.225 0.775 29 H 0.226 0.774 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.119 0.881 33 H 0.125 0.875 34 H 0.113 0.887 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.115 0.885 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.116 0.884 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 18.569 -15.777 0.720 24.376 hybrid contribution -0.554 0.303 0.191 0.660 sum 18.014 -15.473 0.912 23.765 Atomic orbital electron populations 1.69879 1.06219 1.27428 1.49551 1.24782 0.94787 0.99177 0.93881 0.86807 0.80595 0.83169 0.79074 1.19835 1.20929 1.18437 1.21092 0.88559 0.95186 1.53217 0.90323 1.19364 0.94818 0.77589 0.96659 1.45390 1.03657 1.11073 1.77328 1.16084 0.83600 0.82553 0.78270 1.90866 1.55387 1.43182 1.58801 1.45193 1.07277 1.06724 1.82319 1.20190 0.81093 0.89859 1.02227 1.23164 0.93115 0.93286 1.07109 1.22905 0.98060 1.00330 0.94909 1.24125 1.01839 1.01627 0.93998 0.85576 1.22916 0.86380 1.00026 0.90912 1.88979 1.59059 1.24230 1.54295 1.22009 0.90331 0.82673 0.96990 1.23319 0.96212 1.00654 0.98834 1.22855 0.96350 1.01858 0.96320 1.22923 0.95286 1.02538 0.95421 0.92267 0.95905 0.96333 0.77528 0.77368 0.91228 0.91049 0.88127 0.87475 0.88659 0.91226 0.90743 0.88483 0.90952 0.89946 0.88400 0.90465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.57 13.96 55.43 0.77 -25.79 16 2 C 0.08 2.19 5.47 -17.82 -0.10 2.10 16 3 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 7 C -0.54 -14.94 9.83 -34.44 -0.34 -15.28 16 8 H 0.08 2.25 7.84 -52.49 -0.41 1.83 16 9 C 0.24 5.94 4.50 -5.19 -0.02 5.92 16 10 N -0.72 -14.87 5.55 -66.41 -0.37 -15.24 16 11 C 0.70 13.67 8.57 -86.91 -0.74 12.93 16 12 O -0.60 -14.23 16.34 5.29 0.09 -14.15 16 13 N -0.76 -10.76 5.38 -65.22 -0.35 -11.11 16 14 C 0.19 2.39 5.18 -4.04 -0.02 2.37 16 15 C -0.17 -1.66 2.52 -153.22 -0.39 -2.05 16 16 C -0.13 -1.13 9.17 -26.73 -0.25 -1.38 16 17 C -0.20 -1.76 6.89 -88.99 -0.61 -2.37 16 18 H 0.13 1.09 8.14 -51.93 -0.42 0.66 16 19 C 0.07 0.63 7.53 37.93 0.29 0.91 16 20 O -0.35 -3.63 11.16 -35.23 -0.39 -4.02 16 21 C 0.12 1.16 0.95 -90.45 -0.09 1.08 16 22 C -0.15 -1.37 7.41 -26.33 -0.20 -1.56 16 23 C -0.14 -1.11 8.08 -25.73 -0.21 -1.32 16 24 C -0.12 -1.10 7.63 -26.26 -0.20 -1.30 16 25 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 26 H 0.02 0.60 7.20 -51.93 -0.37 0.23 16 27 H 0.02 0.49 7.57 -51.93 -0.39 0.09 16 28 H 0.39 7.05 8.33 -40.82 -0.34 6.71 16 29 H 0.39 4.56 6.08 -40.82 -0.25 4.32 16 30 H 0.07 0.92 7.17 -51.93 -0.37 0.55 16 31 H 0.07 0.94 7.86 -51.92 -0.41 0.53 16 32 H 0.10 0.90 8.11 -51.93 -0.42 0.48 16 33 H 0.11 0.91 6.38 -51.93 -0.33 0.58 16 34 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.10 0.89 6.50 -51.93 -0.34 0.56 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.10 0.84 7.86 -51.93 -0.41 0.44 16 41 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 330.54 15.07 4.98 4.98 Total: -1.00 -32.77 330.54 -8.98 -41.76 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -6.17 Total: 6.66 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: -2.87 Total: 0.05 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: 0.05 Total: -52.15 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.31 Total: -18.17 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.77 -8.98 -41.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894485859.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.060 kcal (2) G-P(sol) polarization free energy of solvation -32.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds