Wall clock time and date at job start Tue Mar 31 2020 02:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99835 * 2 1 4 4 H 1.48491 * 109.47277 * 270.00398 * 3 2 1 5 5 H 1.48505 * 109.46623 * 30.00189 * 3 2 1 6 6 H 1.48498 * 109.46946 * 149.99837 * 3 2 1 7 7 C 1.37873 * 119.99936 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00283 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99763 * 179.97438 * 7 2 1 10 10 N 1.46500 * 109.46880 * 179.97438 * 9 7 2 11 11 C 1.34776 * 119.99615 * 180.02562 * 10 9 7 12 12 O 1.21587 * 120.00426 * 0.02562 * 11 10 9 13 13 N 1.34784 * 119.99998 * 179.97438 * 11 10 9 14 14 C 1.46493 * 119.99956 * 180.02562 * 13 11 10 15 15 C 1.53004 * 109.47121 * 180.02562 * 14 13 11 16 16 C 1.53111 * 120.23660 * 21.87812 * 15 14 13 17 17 C 1.52900 * 60.74744 * 247.86079 * 16 15 14 18 18 H 1.08999 * 119.71191 * 113.11434 * 17 16 15 19 19 C 1.54468 * 118.39089 * 269.77481 * 17 16 15 20 20 O 1.44597 * 105.16126 * 39.82193 * 19 17 16 21 21 C 1.43345 * 105.22491 * 38.92368 * 20 19 17 22 22 C 1.52794 * 115.73929 * 90.15650 * 21 20 19 23 23 C 1.53964 * 86.78300 * 92.96847 * 22 21 20 24 24 C 1.52941 * 115.70808 * 191.22181 * 21 20 19 25 25 H 0.96997 * 120.00075 * 0.02562 * 1 2 3 26 26 H 1.09007 * 109.46756 * 60.00126 * 9 7 2 27 27 H 1.08998 * 109.47355 * 299.99813 * 9 7 2 28 28 H 0.96990 * 120.00360 * 359.97438 * 10 9 7 29 29 H 0.96991 * 119.99392 * 359.97438 * 13 11 10 30 30 H 1.08997 * 109.48091 * 59.99720 * 14 13 11 31 31 H 1.09008 * 109.47065 * 299.99669 * 14 13 11 32 32 H 1.08999 * 117.42520 * 140.15396 * 16 15 14 33 33 H 1.09004 * 117.36896 * 355.58857 * 16 15 14 34 34 H 1.09000 * 110.30468 * 280.90228 * 19 17 16 35 35 H 1.08999 * 110.38801 * 158.78989 * 19 17 16 36 36 H 1.09000 * 113.66342 * 338.49913 * 22 21 20 37 37 H 1.08998 * 113.74648 * 207.44923 * 22 21 20 38 38 H 1.09002 * 113.58788 * 139.28598 * 23 22 21 39 39 H 1.08995 * 113.58487 * 270.01911 * 23 22 21 40 40 H 1.09004 * 113.65783 * 152.55754 * 24 21 20 41 41 H 1.08995 * 113.71247 * 21.46113 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6526 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 7 3.9999 -2.5752 -0.0010 11 6 5.3249 -2.8214 -0.0009 12 8 6.1151 -1.8973 -0.0005 13 7 5.7743 -4.0921 -0.0003 14 6 7.2146 -4.3597 0.0003 15 6 7.4525 -5.8712 0.0003 16 6 6.3600 -6.8237 -0.4932 17 6 6.7373 -6.8231 0.9886 18 1 6.0166 -6.4771 1.7294 19 6 7.8537 -7.7797 1.4626 20 8 8.8549 -7.7385 0.4201 21 6 8.9058 -6.3686 0.0009 22 6 9.9029 -5.4831 0.7468 23 6 10.9084 -5.8257 -0.3677 24 6 9.6970 -6.0954 -1.2791 25 1 -0.4850 0.8400 -0.0004 26 1 3.8752 -0.6803 0.8889 27 1 3.8745 -0.6800 -0.8911 28 1 3.3696 -3.3124 -0.0002 29 1 5.1440 -4.8293 0.0005 30 1 7.6655 -3.9206 0.8902 31 1 7.6660 -3.9213 -0.8897 32 1 6.6729 -7.6800 -1.0906 33 1 5.3999 -6.3861 -0.7669 34 1 7.4634 -8.7915 1.5724 35 1 8.2755 -7.4331 2.4060 36 1 10.1857 -5.8709 1.7254 37 1 9.6210 -4.4306 0.7731 38 1 11.5130 -4.9764 -0.6859 39 1 11.5040 -6.7145 -0.1596 40 1 9.3558 -5.2158 -1.8249 41 1 9.8156 -6.9716 -1.9165 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894485859.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:40 Heat of formation + Delta-G solvation = -36.880466 kcal Electronic energy + Delta-G solvation = -22076.180986 eV Core-core repulsion = 18764.225998 eV Total energy + Delta-G solvation = -3311.954988 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.39264 -40.81183 -37.86344 -36.78058 -36.07037 -34.58172 -34.14698 -30.29399 -28.88704 -27.81400 -26.40099 -25.84197 -23.97828 -22.17057 -21.95970 -21.03419 -20.23633 -19.61317 -18.44237 -17.55017 -17.08408 -16.85214 -16.68600 -16.31053 -16.13422 -15.92647 -15.23072 -15.01321 -14.92935 -14.41951 -14.32511 -14.00016 -13.77434 -13.58870 -13.30747 -13.16274 -13.02367 -12.69341 -12.42765 -11.94312 -11.91952 -11.72824 -11.65198 -11.51196 -11.34520 -11.18007 -10.91058 -10.72806 -10.50681 -10.18376 -9.65759 -8.39118 -6.45998 1.34591 1.36485 1.49741 1.78886 2.17974 2.29711 2.35668 2.67075 2.96674 3.34604 3.39429 3.54058 3.60784 3.72158 3.85761 3.88091 3.99378 4.19507 4.25005 4.58419 4.60063 4.67416 4.70783 4.75843 4.80169 4.81502 4.84480 4.87898 5.03337 5.05314 5.06100 5.09829 5.25415 5.26421 5.32807 5.46976 5.54113 5.88518 5.95607 6.25718 6.56057 7.13278 7.23593 7.63337 8.75606 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.033828 B = 0.003370 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.525843 B = 8307.031026 C = 8841.676684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.027 3.973 3 Si 0.938 3.062 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.260 1.260 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.251 3.749 10 N -0.721 5.721 11 C 0.696 3.304 12 O -0.642 6.642 13 N -0.733 5.733 14 C 0.193 3.807 15 C -0.174 4.174 16 C -0.121 4.121 17 C -0.189 4.189 18 H 0.132 0.868 19 C 0.070 3.930 20 O -0.360 6.360 21 C 0.119 3.881 22 C -0.154 4.154 23 C -0.131 4.131 24 C -0.126 4.126 25 H 0.272 0.728 26 H 0.011 0.989 27 H 0.010 0.990 28 H 0.405 0.595 29 H 0.406 0.594 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.103 0.897 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.923 -17.358 0.904 25.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.173 4.173 3 Si 0.761 3.239 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.184 1.184 7 C -0.583 4.583 8 H 0.077 0.923 9 C 0.127 3.873 10 N -0.375 5.375 11 C 0.395 3.605 12 O -0.524 6.524 13 N -0.392 5.392 14 C 0.069 3.931 15 C -0.175 4.175 16 C -0.158 4.158 17 C -0.207 4.207 18 H 0.150 0.850 19 C -0.006 4.006 20 O -0.279 6.279 21 C 0.078 3.922 22 C -0.192 4.192 23 C -0.168 4.168 24 C -0.164 4.164 25 H 0.082 0.918 26 H 0.029 0.971 27 H 0.028 0.972 28 H 0.240 0.760 29 H 0.244 0.756 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.122 0.878 33 H 0.131 0.869 34 H 0.129 0.871 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.110 0.890 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.116 0.884 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 19.604 -16.585 0.841 25.692 hybrid contribution -0.880 0.415 0.167 0.987 sum 18.723 -16.170 1.008 24.760 Atomic orbital electron populations 1.69978 1.07683 1.28629 1.50748 1.25578 0.95531 1.02654 0.93578 0.85854 0.79257 0.79285 0.79482 1.18968 1.19817 1.18443 1.21273 0.89882 0.94592 1.52602 0.92253 1.18958 0.93024 0.79746 0.95572 1.45099 1.04554 1.09964 1.77850 1.16163 0.82735 0.83668 0.77886 1.90839 1.56166 1.44945 1.60498 1.44986 1.08539 1.05227 1.80417 1.20215 0.79450 0.91760 1.01643 1.23012 0.93946 0.91663 1.08884 1.22965 0.97744 0.99947 0.95176 1.24227 1.01658 1.00846 0.93994 0.85035 1.23078 0.85862 1.00908 0.90715 1.88968 1.59649 1.24433 1.54881 1.22053 0.90043 0.82581 0.97497 1.23316 0.96435 1.00228 0.99211 1.22837 0.96125 1.02275 0.95590 1.22948 0.95544 1.02558 0.95319 0.91832 0.97122 0.97216 0.76034 0.75564 0.91901 0.91703 0.87836 0.86935 0.87059 0.90498 0.90535 0.89008 0.90121 0.89669 0.88434 0.90390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.53 13.96 21.45 0.30 -55.23 16 2 C 0.03 1.52 5.47 84.65 0.46 1.98 16 3 Si 0.94 44.08 27.47 68.60 1.88 45.97 16 4 H -0.26 -12.04 7.11 99.48 0.71 -11.34 16 5 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.26 -12.16 6.54 99.48 0.65 -11.51 16 7 C -0.55 -30.11 9.83 25.60 0.25 -29.86 16 8 H 0.06 3.43 7.84 -2.91 -0.02 3.40 16 9 C 0.25 12.44 4.50 85.63 0.38 12.82 16 10 N -0.72 -29.16 5.55 -482.28 -2.68 -31.84 16 11 C 0.70 26.72 8.57 179.05 1.53 28.26 16 12 O -0.64 -30.03 16.34 -3.99 -0.07 -30.10 16 13 N -0.73 -19.80 5.38 -478.53 -2.57 -22.37 16 14 C 0.19 4.62 5.18 86.38 0.45 5.07 16 15 C -0.17 -3.20 2.52 -51.35 -0.13 -3.33 16 16 C -0.12 -1.94 9.17 30.60 0.28 -1.66 16 17 C -0.19 -2.95 6.89 -9.74 -0.07 -3.01 16 18 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 19 C 0.07 1.03 7.53 72.48 0.55 1.58 16 20 O -0.36 -6.87 11.16 -148.98 -1.66 -8.53 16 21 C 0.12 2.12 0.95 -10.68 -0.01 2.11 16 22 C -0.15 -2.59 7.41 30.85 0.23 -2.36 16 23 C -0.13 -1.95 8.08 31.24 0.25 -1.70 16 24 C -0.13 -2.08 7.63 30.90 0.24 -1.84 16 25 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 26 H 0.01 0.57 7.20 -2.38 -0.02 0.55 16 27 H 0.01 0.51 7.57 -2.39 -0.02 0.49 16 28 H 0.40 14.17 8.33 -92.72 -0.77 13.39 16 29 H 0.41 8.64 6.08 -92.71 -0.56 8.08 16 30 H 0.06 1.62 7.17 -2.39 -0.02 1.60 16 31 H 0.06 1.66 7.86 -2.38 -0.02 1.65 16 32 H 0.10 1.64 8.11 -2.39 -0.02 1.62 16 33 H 0.11 1.65 6.38 -2.38 -0.02 1.63 16 34 H 0.11 1.27 8.14 -2.39 -0.02 1.26 16 35 H 0.08 1.02 8.14 -2.39 -0.02 1.01 16 36 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.09 1.63 6.50 -2.39 -0.02 1.61 16 38 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.10 1.59 7.86 -2.38 -0.02 1.57 16 41 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -68.94 330.54 -0.72 -69.66 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: -0.34 Total: 24.37 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: 4.42 Total: 8.06 kcal Atomic # 7 Polarization: -104.49 SS G_CDS: -4.95 Total: -109.44 kcal Atomic # 8 Polarization: -36.90 SS G_CDS: -1.73 Total: -38.63 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.88 Total: 45.97 kcal Total: -68.94 -0.72 -69.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894485859.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.779 kcal (2) G-P(sol) polarization free energy of solvation -68.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds