Wall clock time and date at job start Tue Mar 31 2020 02:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99652 * 2 1 4 4 H 1.48496 * 109.47153 * 239.99700 * 3 2 1 5 5 H 1.48495 * 109.47244 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47091 * 119.99838 * 3 2 1 7 7 C 1.37878 * 119.99924 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99313 * 172.92005 * 7 2 1 9 9 C 1.50695 * 120.00312 * 352.92438 * 7 2 1 10 10 C 1.53005 * 115.54874 * 84.53301 * 9 7 2 11 11 N 1.46496 * 109.47237 * 39.67836 * 10 9 7 12 12 C 1.34780 * 119.99814 * 181.05372 * 11 10 9 13 13 O 1.21584 * 119.99766 * 359.97438 * 12 11 10 14 14 N 1.34776 * 119.99908 * 179.97438 * 12 11 10 15 15 C 1.46493 * 119.99789 * 179.97438 * 14 12 11 16 16 H 1.08999 * 115.58451 * 350.77507 * 15 14 12 17 17 C 1.53123 * 117.51334 * 136.54161 * 15 14 12 18 18 C 1.52457 * 59.86064 * 107.44755 * 17 15 14 19 19 C 1.53259 * 128.58513 * 117.59736 * 18 17 15 20 20 C 1.53889 * 86.88144 * 114.94814 * 19 18 17 21 21 O 1.42897 * 113.66419 * 270.38369 * 20 19 18 22 22 C 1.53253 * 128.59066 * 242.40274 * 18 17 15 23 23 C 1.52997 * 117.51625 * 230.22950 * 9 7 2 24 24 C 1.52996 * 117.49701 * 298.85880 * 9 7 2 25 25 H 0.96997 * 120.00495 * 5.03971 * 1 2 3 26 26 H 1.08997 * 109.46392 * 279.67753 * 10 9 7 27 27 H 1.08998 * 109.47018 * 159.68346 * 10 9 7 28 28 H 0.96998 * 119.99911 * 1.05033 * 11 10 9 29 29 H 0.97004 * 120.00192 * 0.02562 * 14 12 11 30 30 H 1.08999 * 117.51829 * 214.90038 * 17 15 14 31 31 H 1.09002 * 117.51176 * 359.97438 * 17 15 14 32 32 H 1.09002 * 113.64714 * 229.44815 * 19 18 17 33 33 H 1.09002 * 113.64504 * 0.45349 * 19 18 17 34 34 H 1.09001 * 113.58600 * 139.57103 * 20 19 18 35 35 H 0.96694 * 113.99739 * 277.70466 * 21 20 19 36 36 H 1.09006 * 113.64315 * 359.55271 * 22 18 17 37 37 H 1.08999 * 113.64605 * 130.46350 * 22 18 17 38 38 H 1.08998 * 117.49746 * 214.96954 * 23 9 7 39 39 H 1.09000 * 117.50039 * 359.97438 * 23 9 7 40 40 H 1.08997 * 117.49965 * 359.97438 * 24 9 7 41 41 H 1.08999 * 117.49741 * 144.97503 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0784 -1.1976 -0.1148 9 6 1.2597 -2.4941 0.1619 10 6 0.6735 -3.0826 -1.1231 11 7 1.6224 -2.8953 -2.2233 12 6 1.3083 -3.3190 -3.4636 13 8 0.2377 -3.8572 -3.6692 14 7 2.1811 -3.1462 -4.4759 15 6 1.8400 -3.6073 -5.8239 16 1 0.9388 -4.2158 -5.8992 17 6 2.1626 -2.6735 -6.9937 18 6 2.9910 -3.9335 -6.7691 19 6 3.1558 -5.1462 -7.6917 20 6 4.6363 -4.7448 -7.8157 21 8 4.8973 -3.8407 -8.8911 22 6 4.4855 -4.0508 -6.4505 23 6 1.7705 -3.4749 1.2192 24 6 0.4722 -2.7010 1.4572 25 1 -0.4851 0.8367 -0.0738 26 1 -0.2624 -2.5768 -1.3603 27 1 0.4856 -4.1471 -0.9825 28 1 2.4767 -2.4662 -2.0592 29 1 3.0355 -2.7172 -4.3118 30 1 1.4736 -2.6677 -7.8383 31 1 2.6283 -1.7160 -6.7601 32 1 3.0024 -6.1015 -7.1897 33 1 2.6007 -5.0633 -8.6261 34 1 5.3208 -5.5929 -7.8005 35 1 4.9930 -4.2706 -9.7518 36 1 4.9962 -3.0897 -6.3898 37 1 4.7019 -4.7000 -5.6021 38 1 1.6888 -4.5394 0.9995 39 1 2.6457 -3.1801 1.7981 40 1 0.4932 -1.8970 2.1928 41 1 -0.4637 -3.2561 1.3940 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894563925.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:39 Heat of formation + Delta-G solvation = -4.059460 kcal Electronic energy + Delta-G solvation = -21774.750197 eV Core-core repulsion = 18464.218435 eV Total energy + Delta-G solvation = -3310.531763 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.18321 -38.97843 -36.83453 -36.17172 -33.64876 -33.14440 -32.01367 -31.13045 -26.18231 -25.96777 -25.16010 -22.75485 -21.85145 -21.13921 -20.19030 -19.39614 -18.86684 -17.79616 -17.17586 -16.42877 -15.81656 -15.26675 -14.80153 -14.66701 -14.57675 -14.30070 -13.80927 -13.39906 -13.33755 -12.97107 -12.64390 -12.60511 -12.13320 -11.92201 -11.59768 -11.50258 -11.04414 -11.01762 -10.92166 -10.56278 -10.49366 -10.22897 -10.05884 -9.92177 -9.71396 -9.45678 -8.94795 -8.53421 -8.47961 -8.22895 -7.78702 -6.09740 -4.19280 3.17867 3.24351 3.31436 3.32396 3.57676 3.84045 4.06565 4.32209 4.34616 4.51042 4.56404 4.73925 4.94092 4.99434 5.17552 5.19766 5.34241 5.49935 5.57150 5.65746 5.78629 5.89663 5.91135 6.03410 6.07258 6.12628 6.33594 6.51079 6.59965 6.73648 6.88706 6.94071 7.10520 7.35146 7.38755 7.42364 7.48460 7.69097 7.78353 8.33522 8.77907 8.83064 9.30570 9.47946 10.97895 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.020226 B = 0.003903 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.999048 B = 7171.775007 C = 7798.118274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.078 3.922 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.506 4.506 8 H 0.059 0.941 9 C 0.029 3.971 10 C 0.184 3.816 11 N -0.711 5.711 12 C 0.701 3.299 13 O -0.607 6.607 14 N -0.723 5.723 15 C 0.128 3.872 16 H 0.136 0.864 17 C -0.159 4.159 18 C -0.167 4.167 19 C -0.128 4.128 20 C 0.083 3.917 21 O -0.548 6.548 22 C -0.094 4.094 23 C -0.211 4.211 24 C -0.152 4.152 25 H 0.263 0.737 26 H 0.065 0.935 27 H 0.034 0.966 28 H 0.400 0.600 29 H 0.395 0.605 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.378 0.622 36 H 0.076 0.924 37 H 0.099 0.901 38 H 0.066 0.934 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.547 -8.311 -13.869 18.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.127 4.127 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.543 4.543 8 H 0.078 0.922 9 C 0.028 3.972 10 C 0.060 3.940 11 N -0.364 5.364 12 C 0.401 3.599 13 O -0.487 6.487 14 N -0.376 5.376 15 C 0.020 3.980 16 H 0.153 0.847 17 C -0.198 4.198 18 C -0.169 4.169 19 C -0.166 4.166 20 C 0.024 3.976 21 O -0.353 6.353 22 C -0.131 4.131 23 C -0.248 4.248 24 C -0.190 4.190 25 H 0.072 0.928 26 H 0.083 0.917 27 H 0.052 0.948 28 H 0.236 0.764 29 H 0.228 0.772 30 H 0.118 0.882 31 H 0.116 0.884 32 H 0.111 0.889 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.225 0.775 36 H 0.095 0.905 37 H 0.117 0.883 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.318 -8.225 -13.410 17.351 hybrid contribution 1.183 1.076 -0.299 1.626 sum 8.501 -7.150 -13.709 17.644 Atomic orbital electron populations 1.69964 1.05931 1.27057 1.47444 1.24976 0.94744 0.98855 0.94133 0.86718 0.79678 0.83288 0.78631 1.20274 1.21289 1.20171 1.20239 0.92828 0.88652 1.52614 0.92243 1.19025 0.98237 0.93912 0.85978 1.20708 0.91516 0.96560 0.85257 1.45115 1.22406 1.62584 1.06299 1.15992 0.83539 0.79629 0.80775 1.90841 1.23777 1.50550 1.83581 1.44411 1.20665 1.65618 1.06863 1.21263 0.98148 1.00069 0.78515 0.84678 1.23344 1.01706 0.93990 1.00736 1.22661 0.93584 0.98269 1.02362 1.23165 0.97185 0.97004 0.99217 1.22582 0.94762 0.91842 0.88432 1.86500 1.94022 1.36268 1.18530 1.22524 0.93462 1.01824 0.95338 1.23084 0.98349 0.95677 1.07727 1.22495 0.92572 1.01178 1.02758 0.92754 0.91691 0.94823 0.76402 0.77162 0.88202 0.88419 0.88922 0.90829 0.91456 0.77534 0.90506 0.88283 0.91594 0.90451 0.89939 0.91648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.98 12.97 55.43 0.72 -23.26 16 2 C 0.08 2.04 5.39 -17.82 -0.10 1.94 16 3 Si 0.89 20.28 29.55 -169.99 -5.02 15.25 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 7 C -0.51 -12.75 7.43 -34.44 -0.26 -13.01 16 8 H 0.06 1.46 7.82 -52.48 -0.41 1.05 16 9 C 0.03 0.69 1.71 -155.66 -0.27 0.42 16 10 C 0.18 4.25 5.75 -4.04 -0.02 4.23 16 11 N -0.71 -14.75 5.34 -65.23 -0.35 -15.10 16 12 C 0.70 14.21 8.57 -86.91 -0.74 13.47 16 13 O -0.61 -14.46 15.91 5.29 0.08 -14.38 16 14 N -0.72 -11.35 5.55 -58.89 -0.33 -11.68 16 15 C 0.13 1.79 6.43 -68.14 -0.44 1.35 16 16 H 0.14 2.09 7.40 -51.93 -0.38 1.71 16 17 C -0.16 -1.92 10.46 -26.95 -0.28 -2.20 16 18 C -0.17 -1.86 2.95 -154.80 -0.46 -2.31 16 19 C -0.13 -1.14 7.93 -26.13 -0.21 -1.35 16 20 C 0.08 0.71 5.27 -25.81 -0.14 0.57 16 21 O -0.55 -4.98 13.60 -35.23 -0.48 -5.46 16 22 C -0.09 -0.94 7.91 -26.14 -0.21 -1.14 16 23 C -0.21 -4.43 9.88 -26.73 -0.26 -4.70 16 24 C -0.15 -3.48 9.51 -26.73 -0.25 -3.73 16 25 H 0.26 7.03 8.32 -40.82 -0.34 6.69 16 26 H 0.06 1.71 8.14 -51.93 -0.42 1.29 16 27 H 0.03 0.76 7.95 -51.93 -0.41 0.34 16 28 H 0.40 7.81 7.47 -40.82 -0.30 7.50 16 29 H 0.39 5.35 8.84 -40.82 -0.36 4.99 16 30 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.38 1.69 9.12 45.56 0.42 2.11 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.07 1.27 8.08 -51.93 -0.42 0.85 16 39 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 40 H 0.08 2.00 8.14 -51.93 -0.42 1.57 16 41 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 347.98 15.07 5.24 5.24 Total: -1.00 -31.15 347.98 -9.42 -40.57 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: -5.66 Total: 15.27 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -3.63 Total: -6.46 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: 0.04 Total: -50.04 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.39 Total: -19.84 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.15 -9.42 -40.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894563925.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.514 kcal (2) G-P(sol) polarization free energy of solvation -31.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds