Wall clock time and date at job start Tue Mar 31 2020 02:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99652 * 2 1 4 4 H 1.48496 * 109.47153 * 239.99700 * 3 2 1 5 5 H 1.48495 * 109.47244 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47091 * 119.99838 * 3 2 1 7 7 C 1.37878 * 119.99924 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99313 * 172.92005 * 7 2 1 9 9 C 1.50695 * 120.00312 * 352.92438 * 7 2 1 10 10 C 1.53005 * 115.54874 * 84.53301 * 9 7 2 11 11 N 1.46496 * 109.47237 * 39.67836 * 10 9 7 12 12 C 1.34780 * 119.99814 * 181.05372 * 11 10 9 13 13 O 1.21584 * 119.99766 * 359.97438 * 12 11 10 14 14 N 1.34776 * 119.99908 * 179.97438 * 12 11 10 15 15 C 1.46493 * 119.99789 * 179.97438 * 14 12 11 16 16 H 1.08999 * 115.58451 * 350.77507 * 15 14 12 17 17 C 1.53123 * 117.51334 * 136.54161 * 15 14 12 18 18 C 1.52457 * 59.86064 * 107.44755 * 17 15 14 19 19 C 1.53259 * 128.58513 * 117.59736 * 18 17 15 20 20 C 1.53889 * 86.88144 * 114.94814 * 19 18 17 21 21 O 1.42897 * 113.66419 * 270.38369 * 20 19 18 22 22 C 1.53253 * 128.59066 * 242.40274 * 18 17 15 23 23 C 1.52997 * 117.51625 * 230.22950 * 9 7 2 24 24 C 1.52996 * 117.49701 * 298.85880 * 9 7 2 25 25 H 0.96997 * 120.00495 * 5.03971 * 1 2 3 26 26 H 1.08997 * 109.46392 * 279.67753 * 10 9 7 27 27 H 1.08998 * 109.47018 * 159.68346 * 10 9 7 28 28 H 0.96998 * 119.99911 * 1.05033 * 11 10 9 29 29 H 0.97004 * 120.00192 * 0.02562 * 14 12 11 30 30 H 1.08999 * 117.51829 * 214.90038 * 17 15 14 31 31 H 1.09002 * 117.51176 * 359.97438 * 17 15 14 32 32 H 1.09002 * 113.64714 * 229.44815 * 19 18 17 33 33 H 1.09002 * 113.64504 * 0.45349 * 19 18 17 34 34 H 1.09001 * 113.58600 * 139.57103 * 20 19 18 35 35 H 0.96694 * 113.99739 * 277.70466 * 21 20 19 36 36 H 1.09006 * 113.64315 * 359.55271 * 22 18 17 37 37 H 1.08999 * 113.64605 * 130.46350 * 22 18 17 38 38 H 1.08998 * 117.49746 * 214.96954 * 23 9 7 39 39 H 1.09000 * 117.50039 * 359.97438 * 23 9 7 40 40 H 1.08997 * 117.49965 * 359.97438 * 24 9 7 41 41 H 1.08999 * 117.49741 * 144.97503 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0784 -1.1976 -0.1148 9 6 1.2597 -2.4941 0.1619 10 6 0.6735 -3.0826 -1.1231 11 7 1.6224 -2.8953 -2.2233 12 6 1.3083 -3.3190 -3.4636 13 8 0.2377 -3.8572 -3.6692 14 7 2.1811 -3.1462 -4.4759 15 6 1.8400 -3.6073 -5.8239 16 1 0.9388 -4.2158 -5.8992 17 6 2.1626 -2.6735 -6.9937 18 6 2.9910 -3.9335 -6.7691 19 6 3.1558 -5.1462 -7.6917 20 6 4.6363 -4.7448 -7.8157 21 8 4.8973 -3.8407 -8.8911 22 6 4.4855 -4.0508 -6.4505 23 6 1.7705 -3.4749 1.2192 24 6 0.4722 -2.7010 1.4572 25 1 -0.4851 0.8367 -0.0738 26 1 -0.2624 -2.5768 -1.3603 27 1 0.4856 -4.1471 -0.9825 28 1 2.4767 -2.4662 -2.0592 29 1 3.0355 -2.7172 -4.3118 30 1 1.4736 -2.6677 -7.8383 31 1 2.6283 -1.7160 -6.7601 32 1 3.0024 -6.1015 -7.1897 33 1 2.6007 -5.0633 -8.6261 34 1 5.3208 -5.5929 -7.8005 35 1 4.9930 -4.2706 -9.7518 36 1 4.9962 -3.0897 -6.3898 37 1 4.7019 -4.7000 -5.6021 38 1 1.6888 -4.5394 0.9995 39 1 2.6457 -3.1801 1.7981 40 1 0.4932 -1.8970 2.1928 41 1 -0.4637 -3.2561 1.3940 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894563925.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:39 Heat of formation + Delta-G solvation = -26.571742 kcal Electronic energy + Delta-G solvation = -21775.726403 eV Core-core repulsion = 18464.218435 eV Total energy + Delta-G solvation = -3311.507968 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.27415 -40.32547 -38.52919 -37.16746 -34.97664 -34.60292 -33.98842 -32.27536 -27.96202 -27.08008 -26.71754 -23.53606 -23.07814 -22.85670 -21.71468 -21.24022 -19.71604 -19.20241 -18.26828 -17.80680 -17.28883 -16.65738 -16.29919 -16.22208 -15.95535 -15.52745 -15.19280 -14.81161 -14.42702 -14.28989 -14.05020 -13.84496 -13.53764 -13.45983 -12.93051 -12.78957 -12.77626 -12.53425 -12.37854 -12.00454 -11.86102 -11.51270 -11.37341 -11.23394 -10.86885 -10.82014 -10.77980 -10.44885 -10.16038 -9.82966 -9.32429 -8.08591 -6.22450 1.43875 1.46446 1.52233 1.78261 2.17308 2.42947 2.89243 3.17657 3.26483 3.34646 3.52364 3.59827 3.71508 3.77301 3.84496 4.14127 4.28428 4.51373 4.55085 4.61937 4.69988 4.76408 4.80402 4.85215 4.89660 4.93993 5.02458 5.09200 5.10987 5.22136 5.28404 5.32580 5.50128 5.61412 5.64196 5.76385 5.80378 6.17869 6.38927 6.85265 6.97524 7.25878 7.47626 7.70465 8.98632 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.020226 B = 0.003903 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.999048 B = 7171.775007 C = 7798.118274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.031 3.969 3 Si 0.948 3.052 4 H -0.268 1.268 5 H -0.295 1.295 6 H -0.271 1.271 7 C -0.506 4.506 8 H 0.066 0.934 9 C 0.006 3.994 10 C 0.198 3.802 11 N -0.709 5.709 12 C 0.698 3.302 13 O -0.647 6.647 14 N -0.705 5.705 15 C 0.096 3.904 16 H 0.115 0.885 17 C -0.155 4.155 18 C -0.153 4.153 19 C -0.125 4.125 20 C 0.092 3.908 21 O -0.568 6.568 22 C -0.100 4.100 23 C -0.180 4.180 24 C -0.162 4.162 25 H 0.258 0.742 26 H 0.023 0.977 27 H 0.038 0.962 28 H 0.407 0.593 29 H 0.407 0.593 30 H 0.110 0.890 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.397 0.603 36 H 0.070 0.930 37 H 0.108 0.892 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.063 0.937 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.983 -9.027 -14.995 20.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.170 4.170 3 Si 0.774 3.226 4 H -0.193 1.193 5 H -0.221 1.221 6 H -0.196 1.196 7 C -0.543 4.543 8 H 0.084 0.916 9 C 0.005 3.995 10 C 0.073 3.927 11 N -0.363 5.363 12 C 0.398 3.602 13 O -0.530 6.530 14 N -0.358 5.358 15 C -0.011 4.011 16 H 0.133 0.867 17 C -0.194 4.194 18 C -0.154 4.154 19 C -0.162 4.162 20 C 0.033 3.967 21 O -0.377 6.377 22 C -0.138 4.138 23 C -0.217 4.217 24 C -0.200 4.200 25 H 0.067 0.933 26 H 0.042 0.958 27 H 0.056 0.944 28 H 0.244 0.756 29 H 0.243 0.757 30 H 0.128 0.872 31 H 0.114 0.886 32 H 0.120 0.880 33 H 0.099 0.901 34 H 0.111 0.889 35 H 0.248 0.752 36 H 0.088 0.912 37 H 0.126 0.874 38 H 0.107 0.893 39 H 0.104 0.896 40 H 0.082 0.918 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.821 -8.944 -14.581 19.725 hybrid contribution 0.437 1.261 -0.006 1.335 sum 10.259 -7.683 -14.587 19.418 Atomic orbital electron populations 1.70106 1.07400 1.27321 1.49290 1.25670 0.95294 1.01919 0.94165 0.85776 0.78366 0.79467 0.78966 1.19281 1.22112 1.19620 1.20545 0.93206 0.89322 1.51276 0.91555 1.19094 0.99370 0.94631 0.86401 1.20373 0.90342 0.96106 0.85868 1.44943 1.22199 1.62919 1.06194 1.16135 0.83559 0.79276 0.81226 1.90808 1.25683 1.52318 1.84190 1.44218 1.20191 1.64767 1.06606 1.21343 0.99572 1.02076 0.78065 0.86682 1.23362 1.02076 0.94283 0.99659 1.22850 0.93418 0.98537 1.00626 1.23249 0.97843 0.96221 0.98910 1.22531 0.94752 0.91996 0.87429 1.86450 1.93983 1.37382 1.19858 1.22656 0.92048 1.02049 0.97006 1.23083 0.97210 0.96311 1.05065 1.22434 0.94002 1.01480 1.02107 0.93313 0.95843 0.94351 0.75618 0.75731 0.87216 0.88599 0.88006 0.90129 0.88884 0.75242 0.91159 0.87370 0.89307 0.89606 0.91806 0.91145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.96 12.97 21.45 0.28 -50.68 16 2 C 0.03 1.62 5.39 84.66 0.46 2.07 16 3 Si 0.95 41.47 29.55 68.60 2.03 43.49 16 4 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 5 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 6 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 7 C -0.51 -25.21 7.43 25.60 0.19 -25.02 16 8 H 0.07 3.15 7.82 -2.91 -0.02 3.13 16 9 C 0.01 0.27 1.71 -52.93 -0.09 0.18 16 10 C 0.20 9.30 5.75 86.38 0.50 9.80 16 11 N -0.71 -29.48 5.34 -478.54 -2.55 -32.03 16 12 C 0.70 28.62 8.57 179.05 1.53 30.16 16 13 O -0.65 -31.65 15.91 -3.98 -0.06 -31.72 16 14 N -0.70 -21.92 5.55 -458.48 -2.55 -24.47 16 15 C 0.10 2.66 6.43 44.86 0.29 2.95 16 16 H 0.12 3.66 7.40 -2.39 -0.02 3.65 16 17 C -0.16 -3.59 10.46 30.46 0.32 -3.27 16 18 C -0.15 -3.13 2.95 -52.37 -0.15 -3.29 16 19 C -0.12 -1.90 7.93 30.98 0.25 -1.65 16 20 C 0.09 1.27 5.27 31.19 0.16 1.44 16 21 O -0.57 -8.63 13.60 -148.98 -2.03 -10.66 16 22 C -0.10 -1.75 7.91 30.98 0.24 -1.51 16 23 C -0.18 -7.21 9.88 30.59 0.30 -6.90 16 24 C -0.16 -7.41 9.51 30.59 0.29 -7.12 16 25 H 0.26 14.16 8.32 -92.71 -0.77 13.39 16 26 H 0.02 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.04 1.73 7.95 -2.39 -0.02 1.71 16 28 H 0.41 15.62 7.47 -92.71 -0.69 14.93 16 29 H 0.41 10.63 8.84 -92.71 -0.82 9.81 16 30 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.40 2.33 9.12 -74.06 -0.68 1.65 16 36 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 37 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.09 3.17 8.08 -2.39 -0.02 3.15 16 39 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 40 H 0.06 3.12 8.14 -2.39 -0.02 3.10 16 41 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 Total: -1.00 -67.32 347.98 -1.73 -69.05 By element: Atomic # 1 Polarization: 40.31 SS G_CDS: -1.13 Total: 39.18 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: 4.29 Total: -2.17 kcal Atomic # 7 Polarization: -102.36 SS G_CDS: -4.82 Total: -107.18 kcal Atomic # 8 Polarization: -40.29 SS G_CDS: -2.09 Total: -42.38 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.49 kcal Total: -67.32 -1.73 -69.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894563925.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.476 kcal (2) G-P(sol) polarization free energy of solvation -67.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds