Wall clock time and date at job start Tue Mar 31 2020 02:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00216 * 2 1 4 4 H 1.48506 * 109.47115 * 269.99513 * 3 2 1 5 5 H 1.48500 * 109.47314 * 29.99974 * 3 2 1 6 6 H 1.48505 * 109.47241 * 150.00231 * 3 2 1 7 7 C 1.37884 * 119.99606 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00184 * 174.23416 * 7 2 1 9 9 C 1.50699 * 119.99872 * 354.23157 * 7 2 1 10 10 C 1.52997 * 115.56123 * 80.47312 * 9 7 2 11 11 N 1.46499 * 109.47209 * 39.97252 * 10 9 7 12 12 C 1.34782 * 119.99912 * 186.35636 * 11 10 9 13 13 O 1.21585 * 119.99974 * 0.02562 * 12 11 10 14 14 N 1.34776 * 119.99863 * 179.97438 * 12 11 10 15 15 C 1.46505 * 119.99867 * 180.02562 * 14 12 11 16 16 H 1.09007 * 115.55779 * 9.26538 * 15 14 12 17 17 C 1.53116 * 117.51073 * 223.46361 * 15 14 12 18 18 C 1.52458 * 59.85807 * 252.55001 * 17 15 14 19 19 C 1.53252 * 128.58399 * 117.59833 * 18 17 15 20 20 C 1.53891 * 86.88377 * 114.94777 * 19 18 17 21 21 O 1.42899 * 113.59091 * 270.39386 * 20 19 18 22 22 C 1.53254 * 128.58853 * 242.40352 * 18 17 15 23 23 C 1.53002 * 117.50109 * 294.77726 * 9 7 2 24 24 C 1.53001 * 60.00030 * 252.51425 * 23 9 7 25 25 H 0.97000 * 119.99771 * 5.03946 * 1 2 3 26 26 H 1.08999 * 109.47311 * 159.96996 * 10 9 7 27 27 H 1.09007 * 109.47154 * 279.97335 * 10 9 7 28 28 H 0.96998 * 120.00180 * 6.35499 * 11 10 9 29 29 H 0.96998 * 120.00229 * 0.02562 * 14 12 11 30 30 H 1.09000 * 117.51987 * 359.97438 * 17 15 14 31 31 H 1.09004 * 117.51125 * 145.10229 * 17 15 14 32 32 H 1.09001 * 113.64567 * 229.44525 * 19 18 17 33 33 H 1.08999 * 113.65030 * 0.45186 * 19 18 17 34 34 H 1.09007 * 113.66055 * 139.58057 * 20 19 18 35 35 H 0.96698 * 113.99820 * 277.66582 * 21 20 19 36 36 H 1.09000 * 113.64353 * 359.54830 * 22 18 17 37 37 H 1.08995 * 113.65156 * 130.55372 * 22 18 17 38 38 H 1.09002 * 117.49698 * 145.02523 * 23 9 7 39 39 H 1.08992 * 117.49568 * 0.02562 * 23 9 7 40 40 H 1.08992 * 117.49952 * 107.49042 * 24 23 9 41 41 H 1.09006 * 117.49941 * 252.51353 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 3.0804 -1.1967 -0.0934 9 6 1.2566 -2.4958 0.1323 10 6 0.6132 -3.0205 -1.1528 11 7 1.5203 -2.7943 -2.2807 12 6 1.1122 -3.0598 -3.5375 13 8 -0.0090 -3.4867 -3.7352 14 7 1.9465 -2.8513 -4.5752 15 6 1.5027 -3.1394 -5.9414 16 1 0.4426 -3.3673 -6.0532 17 6 2.4844 -3.8647 -6.8658 18 6 2.1845 -2.3850 -7.0773 19 6 3.1447 -1.1935 -6.9924 20 6 2.8932 -0.9913 -8.4971 21 8 3.8006 -1.7148 -9.3309 22 6 1.5445 -1.7034 -8.2916 23 6 0.5220 -2.7584 1.4484 24 6 1.8033 -3.5277 1.1209 25 1 -0.4850 0.8368 -0.0738 26 1 0.4182 -4.0881 -1.0519 27 1 -0.3252 -2.4949 -1.3302 28 1 2.4146 -2.4534 -2.1231 29 1 2.8408 -2.5104 -4.4176 30 1 3.4604 -4.1271 -6.4576 31 1 2.0702 -4.5704 -7.5860 32 1 2.7739 -0.3764 -6.3735 33 1 4.1706 -1.4748 -6.7546 34 1 2.7944 0.0547 -8.7874 35 1 4.6502 -1.2726 -9.4640 36 1 1.2876 -2.3935 -9.0952 37 1 0.7284 -1.0282 -8.0343 38 1 -0.4198 -3.3050 1.3987 39 1 0.5792 -1.9896 2.2188 40 1 2.7038 -3.2651 1.6759 41 1 1.7045 -4.5804 0.8556 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894563926.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:42 Heat of formation + Delta-G solvation = -4.105506 kcal Electronic energy + Delta-G solvation = -21871.041931 eV Core-core repulsion = 18560.508172 eV Total energy + Delta-G solvation = -3310.533759 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.15790 -38.95787 -36.83119 -36.15198 -33.62849 -33.13060 -32.03125 -31.11246 -26.16014 -25.93832 -25.16129 -22.72740 -21.84036 -21.15956 -20.17909 -19.38925 -18.86174 -17.75000 -17.23160 -16.34607 -15.78533 -15.23142 -14.83509 -14.78873 -14.52995 -14.24660 -13.83280 -13.45683 -13.19254 -12.92883 -12.64449 -12.48227 -12.10694 -12.03668 -11.60627 -11.47607 -11.08560 -11.04484 -10.92021 -10.55574 -10.40442 -10.24191 -10.01954 -9.91229 -9.71553 -9.45734 -8.95238 -8.54016 -8.47660 -8.24242 -7.78098 -6.10390 -4.19576 3.18705 3.20996 3.30099 3.31539 3.60053 3.85980 4.09038 4.31142 4.39984 4.51959 4.61449 4.74708 4.95010 5.01271 5.20359 5.21768 5.32607 5.56618 5.63421 5.65524 5.76494 5.91165 5.96208 6.03802 6.07207 6.15368 6.32129 6.50257 6.59793 6.72539 6.89156 6.93944 7.08878 7.35457 7.40903 7.41429 7.49214 7.69219 7.78137 8.32803 8.78048 8.83005 9.32012 9.47384 10.97442 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.018064 B = 0.004334 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.670306 B = 6459.504598 C = 7456.639947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.078 3.922 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.503 4.503 8 H 0.060 0.940 9 C 0.030 3.970 10 C 0.184 3.816 11 N -0.710 5.710 12 C 0.701 3.299 13 O -0.606 6.606 14 N -0.722 5.722 15 C 0.127 3.873 16 H 0.136 0.864 17 C -0.159 4.159 18 C -0.167 4.167 19 C -0.131 4.131 20 C 0.083 3.917 21 O -0.549 6.549 22 C -0.091 4.091 23 C -0.156 4.156 24 C -0.211 4.211 25 H 0.262 0.738 26 H 0.031 0.969 27 H 0.069 0.931 28 H 0.399 0.601 29 H 0.394 0.606 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.378 0.622 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.065 0.935 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.205 -2.050 -13.892 15.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.127 4.127 3 Si 0.715 3.285 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.541 4.541 8 H 0.078 0.922 9 C 0.029 3.971 10 C 0.060 3.940 11 N -0.363 5.363 12 C 0.401 3.599 13 O -0.486 6.486 14 N -0.375 5.375 15 C 0.020 3.980 16 H 0.154 0.846 17 C -0.198 4.198 18 C -0.169 4.169 19 C -0.169 4.169 20 C 0.023 3.977 21 O -0.354 6.354 22 C -0.128 4.128 23 C -0.194 4.194 24 C -0.248 4.248 25 H 0.072 0.928 26 H 0.049 0.951 27 H 0.087 0.913 28 H 0.234 0.766 29 H 0.227 0.773 30 H 0.114 0.886 31 H 0.118 0.882 32 H 0.113 0.887 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.225 0.775 36 H 0.095 0.905 37 H 0.117 0.883 38 H 0.084 0.916 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.467 -2.735 -13.923 15.206 hybrid contribution 1.757 1.731 0.242 2.479 sum 7.224 -1.003 -13.682 15.504 Atomic orbital electron populations 1.69972 1.05903 1.26898 1.47640 1.24972 0.94733 0.98814 0.94217 0.86670 0.79983 0.83725 0.78080 1.20748 1.21155 1.19816 1.20280 0.92592 0.88564 1.52625 0.92236 1.19047 0.97905 0.93643 0.86474 1.20706 0.92569 0.96339 0.84423 1.45059 1.18793 1.68501 1.03908 1.15980 0.84111 0.78953 0.80836 1.90844 1.19628 1.53546 1.84597 1.44405 1.17155 1.71662 1.04316 1.21275 0.97728 1.00970 0.78052 0.84629 1.23339 1.01375 0.92511 1.02535 1.22649 1.01879 0.93596 0.98726 1.23133 0.99192 0.97218 0.97315 1.22598 0.91329 0.94233 0.89499 1.86477 1.28904 1.50125 1.69930 1.22561 0.95167 0.99076 0.96013 1.22535 0.93086 1.01572 1.02203 1.23066 0.97986 0.95704 1.08034 0.92846 0.95085 0.91258 0.76607 0.77260 0.88629 0.88158 0.88727 0.90939 0.91408 0.77504 0.90456 0.88262 0.91621 0.90008 0.90455 0.91532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.92 13.11 55.43 0.73 -23.20 16 2 C 0.08 2.02 5.42 -17.82 -0.10 1.92 16 3 Si 0.89 20.11 29.54 -169.99 -5.02 15.09 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.50 -12.62 7.51 -34.44 -0.26 -12.88 16 8 H 0.06 1.46 7.82 -52.49 -0.41 1.05 16 9 C 0.03 0.70 1.62 -155.66 -0.25 0.45 16 10 C 0.18 4.25 5.76 -4.04 -0.02 4.22 16 11 N -0.71 -14.70 5.28 -65.22 -0.34 -15.04 16 12 C 0.70 14.30 8.57 -86.91 -0.74 13.56 16 13 O -0.61 -14.57 15.89 5.29 0.08 -14.49 16 14 N -0.72 -11.38 5.55 -58.88 -0.33 -11.71 16 15 C 0.13 1.80 6.43 -68.14 -0.44 1.36 16 16 H 0.14 2.15 7.40 -51.92 -0.38 1.76 16 17 C -0.16 -1.85 10.46 -26.95 -0.28 -2.13 16 18 C -0.17 -1.93 2.95 -154.80 -0.46 -2.39 16 19 C -0.13 -1.33 7.91 -26.14 -0.21 -1.54 16 20 C 0.08 0.76 5.27 -25.80 -0.14 0.63 16 21 O -0.55 -5.16 13.59 -35.23 -0.48 -5.64 16 22 C -0.09 -0.93 7.93 -26.13 -0.21 -1.14 16 23 C -0.16 -3.54 9.71 -26.73 -0.26 -3.80 16 24 C -0.21 -4.39 9.88 -26.73 -0.26 -4.66 16 25 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 26 H 0.03 0.69 7.95 -51.93 -0.41 0.28 16 27 H 0.07 1.83 8.12 -51.93 -0.42 1.41 16 28 H 0.40 7.68 7.61 -40.82 -0.31 7.37 16 29 H 0.39 5.31 8.84 -40.82 -0.36 4.95 16 30 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.38 1.90 9.12 45.56 0.42 2.31 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 39 H 0.08 1.96 8.14 -51.93 -0.42 1.53 16 40 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 41 H 0.07 1.27 8.08 -51.93 -0.42 0.85 16 LS Contribution 348.38 15.07 5.25 5.25 Total: -1.00 -31.05 348.38 -9.41 -40.45 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: -5.67 Total: 15.68 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: -3.63 Total: -6.39 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: 0.06 Total: -49.95 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.39 Total: -20.13 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.05 -9.41 -40.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894563926.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.346 kcal (2) G-P(sol) polarization free energy of solvation -31.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds