Wall clock time and date at job start Tue Mar 31 2020 02:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00216 * 2 1 4 4 H 1.48506 * 109.47115 * 269.99513 * 3 2 1 5 5 H 1.48500 * 109.47314 * 29.99974 * 3 2 1 6 6 H 1.48505 * 109.47241 * 150.00231 * 3 2 1 7 7 C 1.37884 * 119.99606 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00184 * 174.23416 * 7 2 1 9 9 C 1.50699 * 119.99872 * 354.23157 * 7 2 1 10 10 C 1.52997 * 115.56123 * 80.47312 * 9 7 2 11 11 N 1.46499 * 109.47209 * 39.97252 * 10 9 7 12 12 C 1.34782 * 119.99912 * 186.35636 * 11 10 9 13 13 O 1.21585 * 119.99974 * 0.02562 * 12 11 10 14 14 N 1.34776 * 119.99863 * 179.97438 * 12 11 10 15 15 C 1.46505 * 119.99867 * 180.02562 * 14 12 11 16 16 H 1.09007 * 115.55779 * 9.26538 * 15 14 12 17 17 C 1.53116 * 117.51073 * 223.46361 * 15 14 12 18 18 C 1.52458 * 59.85807 * 252.55001 * 17 15 14 19 19 C 1.53252 * 128.58399 * 117.59833 * 18 17 15 20 20 C 1.53891 * 86.88377 * 114.94777 * 19 18 17 21 21 O 1.42899 * 113.59091 * 270.39386 * 20 19 18 22 22 C 1.53254 * 128.58853 * 242.40352 * 18 17 15 23 23 C 1.53002 * 117.50109 * 294.77726 * 9 7 2 24 24 C 1.53001 * 60.00030 * 252.51425 * 23 9 7 25 25 H 0.97000 * 119.99771 * 5.03946 * 1 2 3 26 26 H 1.08999 * 109.47311 * 159.96996 * 10 9 7 27 27 H 1.09007 * 109.47154 * 279.97335 * 10 9 7 28 28 H 0.96998 * 120.00180 * 6.35499 * 11 10 9 29 29 H 0.96998 * 120.00229 * 0.02562 * 14 12 11 30 30 H 1.09000 * 117.51987 * 359.97438 * 17 15 14 31 31 H 1.09004 * 117.51125 * 145.10229 * 17 15 14 32 32 H 1.09001 * 113.64567 * 229.44525 * 19 18 17 33 33 H 1.08999 * 113.65030 * 0.45186 * 19 18 17 34 34 H 1.09007 * 113.66055 * 139.58057 * 20 19 18 35 35 H 0.96698 * 113.99820 * 277.66582 * 21 20 19 36 36 H 1.09000 * 113.64353 * 359.54830 * 22 18 17 37 37 H 1.08995 * 113.65156 * 130.55372 * 22 18 17 38 38 H 1.09002 * 117.49698 * 145.02523 * 23 9 7 39 39 H 1.08992 * 117.49568 * 0.02562 * 23 9 7 40 40 H 1.08992 * 117.49952 * 107.49042 * 24 23 9 41 41 H 1.09006 * 117.49941 * 252.51353 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 3.0804 -1.1967 -0.0934 9 6 1.2566 -2.4958 0.1323 10 6 0.6132 -3.0205 -1.1528 11 7 1.5203 -2.7943 -2.2807 12 6 1.1122 -3.0598 -3.5375 13 8 -0.0090 -3.4867 -3.7352 14 7 1.9465 -2.8513 -4.5752 15 6 1.5027 -3.1394 -5.9414 16 1 0.4426 -3.3673 -6.0532 17 6 2.4844 -3.8647 -6.8658 18 6 2.1845 -2.3850 -7.0773 19 6 3.1447 -1.1935 -6.9924 20 6 2.8932 -0.9913 -8.4971 21 8 3.8006 -1.7148 -9.3309 22 6 1.5445 -1.7034 -8.2916 23 6 0.5220 -2.7584 1.4484 24 6 1.8033 -3.5277 1.1209 25 1 -0.4850 0.8368 -0.0738 26 1 0.4182 -4.0881 -1.0519 27 1 -0.3252 -2.4949 -1.3302 28 1 2.4146 -2.4534 -2.1231 29 1 2.8408 -2.5104 -4.4176 30 1 3.4604 -4.1271 -6.4576 31 1 2.0702 -4.5704 -7.5860 32 1 2.7739 -0.3764 -6.3735 33 1 4.1706 -1.4748 -6.7546 34 1 2.7944 0.0547 -8.7874 35 1 4.6502 -1.2726 -9.4640 36 1 1.2876 -2.3935 -9.0952 37 1 0.7284 -1.0282 -8.0343 38 1 -0.4198 -3.3050 1.3987 39 1 0.5792 -1.9896 2.2188 40 1 2.7038 -3.2651 1.6759 41 1 1.7045 -4.5804 0.8556 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894563926.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:41 Heat of formation + Delta-G solvation = -26.488002 kcal Electronic energy + Delta-G solvation = -21872.012509 eV Core-core repulsion = 18560.508172 eV Total energy + Delta-G solvation = -3311.504337 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.27189 -40.32539 -38.52351 -37.16712 -34.97131 -34.59957 -33.99700 -32.26592 -27.94701 -27.07157 -26.74430 -23.53716 -23.08320 -22.85875 -21.70690 -21.22816 -19.75595 -19.18895 -18.31420 -17.82671 -17.18269 -16.66384 -16.30184 -16.22361 -15.93844 -15.47680 -15.38516 -14.87335 -14.40480 -14.22620 -13.93250 -13.86329 -13.49298 -13.43190 -12.91666 -12.89448 -12.83659 -12.48338 -12.33517 -12.01797 -11.97702 -11.52447 -11.29038 -11.22405 -10.89271 -10.81723 -10.78751 -10.45613 -10.14974 -9.83620 -9.31533 -8.07924 -6.21654 1.41820 1.46153 1.53902 1.78447 2.19368 2.43146 2.88841 3.18386 3.25302 3.33693 3.52701 3.61179 3.68119 3.78053 3.83325 4.14422 4.28871 4.49053 4.54805 4.62524 4.70400 4.76876 4.78663 4.85441 4.87738 4.94030 5.02175 5.09109 5.10473 5.19572 5.28272 5.32529 5.50626 5.62170 5.63681 5.77758 5.81113 6.18779 6.39311 6.85987 6.94755 7.27343 7.48332 7.72008 8.99621 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.018064 B = 0.004334 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.670306 B = 6459.504598 C = 7456.639947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.030 3.970 3 Si 0.948 3.052 4 H -0.276 1.276 5 H -0.294 1.294 6 H -0.264 1.264 7 C -0.502 4.502 8 H 0.066 0.934 9 C 0.006 3.994 10 C 0.198 3.802 11 N -0.707 5.707 12 C 0.698 3.302 13 O -0.648 6.648 14 N -0.703 5.703 15 C 0.093 3.907 16 H 0.111 0.889 17 C -0.142 4.142 18 C -0.159 4.159 19 C -0.130 4.130 20 C 0.093 3.907 21 O -0.565 6.565 22 C -0.098 4.098 23 C -0.166 4.166 24 C -0.179 4.179 25 H 0.257 0.743 26 H 0.036 0.964 27 H 0.026 0.974 28 H 0.407 0.593 29 H 0.407 0.593 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.397 0.603 36 H 0.076 0.924 37 H 0.103 0.897 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.086 0.914 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.702 -1.838 -15.007 17.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.171 4.171 3 Si 0.774 3.226 4 H -0.202 1.202 5 H -0.220 1.220 6 H -0.188 1.188 7 C -0.540 4.540 8 H 0.084 0.916 9 C 0.005 3.995 10 C 0.073 3.927 11 N -0.360 5.360 12 C 0.398 3.602 13 O -0.531 6.531 14 N -0.357 5.357 15 C -0.014 4.014 16 H 0.129 0.871 17 C -0.180 4.180 18 C -0.160 4.160 19 C -0.168 4.168 20 C 0.034 3.966 21 O -0.373 6.373 22 C -0.135 4.135 23 C -0.204 4.204 24 C -0.216 4.216 25 H 0.066 0.934 26 H 0.054 0.946 27 H 0.044 0.956 28 H 0.243 0.757 29 H 0.243 0.757 30 H 0.124 0.876 31 H 0.127 0.873 32 H 0.109 0.891 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.247 0.753 36 H 0.095 0.905 37 H 0.121 0.879 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.105 0.895 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.046 -2.513 -15.073 17.270 hybrid contribution 0.992 1.616 0.539 1.971 sum 9.038 -0.897 -14.534 17.139 Atomic orbital electron populations 1.70118 1.07425 1.27203 1.49486 1.25671 0.95274 1.01923 0.94228 0.85715 0.78904 0.79867 0.78099 1.20223 1.22010 1.18785 1.20570 0.92930 0.89219 1.51265 0.91595 1.19115 0.99077 0.94458 0.86803 1.20370 0.91283 0.95852 0.85197 1.44880 1.18703 1.68779 1.03676 1.16143 0.84029 0.78672 0.81389 1.90811 1.21659 1.55424 1.85207 1.44185 1.16980 1.70535 1.03971 1.21333 0.97372 1.04839 0.77807 0.87082 1.23361 1.00693 0.92964 1.01013 1.22846 1.01663 0.94161 0.97376 1.23174 0.99169 0.96131 0.98278 1.22500 0.90338 0.95017 0.88735 1.86432 1.30167 1.50976 1.69717 1.22671 0.96265 0.99266 0.95303 1.22481 0.94520 1.01994 1.01453 1.23068 0.96978 0.96181 1.05364 0.93384 0.94583 0.95556 0.75675 0.75679 0.87605 0.87253 0.89105 0.89997 0.89335 0.75260 0.90517 0.87914 0.91172 0.91743 0.89546 0.89281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.85 13.11 21.45 0.28 -50.57 16 2 C 0.03 1.57 5.42 84.66 0.46 2.03 16 3 Si 0.95 41.00 29.54 68.60 2.03 43.03 16 4 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 6 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 7 C -0.50 -24.84 7.51 25.60 0.19 -24.64 16 8 H 0.07 3.12 7.82 -2.91 -0.02 3.09 16 9 C 0.01 0.29 1.62 -52.93 -0.09 0.20 16 10 C 0.20 9.29 5.76 86.38 0.50 9.79 16 11 N -0.71 -29.30 5.28 -478.53 -2.53 -31.82 16 12 C 0.70 28.79 8.57 179.05 1.53 30.32 16 13 O -0.65 -32.16 15.89 -3.98 -0.06 -32.23 16 14 N -0.70 -21.83 5.55 -458.47 -2.55 -24.38 16 15 C 0.09 2.61 6.43 44.85 0.29 2.90 16 16 H 0.11 3.67 7.40 -2.38 -0.02 3.65 16 17 C -0.14 -3.06 10.46 30.45 0.32 -2.74 16 18 C -0.16 -3.42 2.95 -52.37 -0.15 -3.57 16 19 C -0.13 -2.32 7.91 30.98 0.24 -2.07 16 20 C 0.09 1.46 5.27 31.19 0.16 1.62 16 21 O -0.56 -8.87 13.59 -148.98 -2.03 -10.90 16 22 C -0.10 -1.84 7.93 30.98 0.25 -1.60 16 23 C -0.17 -7.54 9.71 30.60 0.30 -7.24 16 24 C -0.18 -7.11 9.88 30.60 0.30 -6.81 16 25 H 0.26 14.05 8.32 -92.71 -0.77 13.28 16 26 H 0.04 1.62 7.95 -2.39 -0.02 1.61 16 27 H 0.03 1.45 8.12 -2.38 -0.02 1.43 16 28 H 0.41 15.32 7.61 -92.71 -0.71 14.62 16 29 H 0.41 10.39 8.84 -92.71 -0.82 9.57 16 30 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.11 2.17 8.14 -2.38 -0.02 2.15 16 32 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 35 H 0.40 2.68 9.12 -74.06 -0.68 2.00 16 36 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 39 H 0.06 3.11 8.14 -2.39 -0.02 3.09 16 40 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 41 H 0.09 3.15 8.08 -2.38 -0.02 3.13 16 Total: -1.00 -67.10 348.38 -1.69 -68.79 By element: Atomic # 1 Polarization: 41.04 SS G_CDS: -1.14 Total: 39.90 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: 4.30 Total: -1.82 kcal Atomic # 7 Polarization: -101.98 SS G_CDS: -4.79 Total: -106.77 kcal Atomic # 8 Polarization: -41.04 SS G_CDS: -2.09 Total: -43.13 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Total: -67.10 -1.69 -68.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894563926.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.302 kcal (2) G-P(sol) polarization free energy of solvation -67.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds