Wall clock time and date at job start Tue Mar 31 2020 01:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50706 * 120.00105 * 2 1 4 4 N 1.46902 * 109.46925 * 124.16862 * 3 2 1 5 5 C 1.46903 * 110.99607 * 301.51824 * 4 3 2 6 6 C 1.50694 * 109.47475 * 288.71720 * 5 4 3 7 7 H 1.07996 * 120.00021 * 354.84685 * 6 5 4 8 8 C 1.37883 * 120.00100 * 174.83692 * 6 5 4 9 9 N 1.31515 * 119.99645 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00095 * 180.02562 * 8 6 5 11 11 H 1.48507 * 109.47128 * 90.00099 * 10 8 6 12 12 H 1.48498 * 109.47251 * 210.00369 * 10 8 6 13 13 H 1.48504 * 109.47347 * 330.00533 * 10 8 6 14 14 C 1.46895 * 111.00451 * 65.47562 * 4 3 2 15 15 C 1.50701 * 109.46939 * 66.04295 * 14 4 3 16 16 C 1.38838 * 120.76841 * 259.72014 * 15 14 4 17 17 C 1.38022 * 119.30569 * 179.71025 * 16 15 14 18 18 N 1.31991 * 120.87992 * 0.57728 * 17 16 15 19 19 C 1.32193 * 121.67266 * 359.72190 * 18 17 16 20 20 O 1.35729 * 119.69801 * 179.97438 * 19 18 17 21 21 C 1.42898 * 116.99810 * 359.97438 * 20 19 18 22 22 C 1.38533 * 120.76610 * 80.00678 * 15 14 4 23 23 F 1.35101 * 120.46448 * 0.02562 * 22 15 14 24 24 H 1.08000 * 119.99872 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.00151 * 179.97438 * 1 2 3 26 26 H 1.08001 * 120.00210 * 179.97438 * 2 1 3 27 27 H 1.08993 * 109.46850 * 4.16963 * 3 2 1 28 28 H 1.08999 * 109.47059 * 244.16699 * 3 2 1 29 29 H 1.09003 * 109.47512 * 48.72473 * 5 4 3 30 30 H 1.09005 * 109.46921 * 168.71651 * 5 4 3 31 31 H 0.97007 * 119.99821 * 179.97438 * 9 8 6 32 32 H 1.09002 * 109.47593 * 186.04775 * 14 4 3 33 33 H 1.09006 * 109.47024 * 306.04971 * 14 4 3 34 34 H 1.08001 * 120.34556 * 359.97438 * 16 15 14 35 35 H 1.07997 * 119.55578 * 180.28345 * 17 16 15 36 36 H 1.09000 * 109.47115 * 299.99739 * 21 20 19 37 37 H 1.09002 * 109.47402 * 59.99953 * 21 20 19 38 38 H 1.09001 * 109.47341 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9820 1.3402 1.1459 5 6 2.2516 1.1840 2.4109 6 6 1.4602 2.4352 2.6920 7 1 1.5604 3.2942 2.0451 8 6 0.6081 2.4833 3.7749 9 7 0.4864 1.4374 4.5628 10 14 -0.3734 4.0341 4.1229 11 1 -1.6771 3.9641 3.4153 12 1 -0.6090 4.1533 5.5842 13 1 0.3857 5.2179 3.6457 14 6 4.0291 0.3186 1.0130 15 6 4.9102 0.6526 -0.1631 16 6 4.7417 0.0096 -1.3820 17 6 5.5618 0.3433 -2.4409 18 7 6.5071 1.2544 -2.3047 19 6 6.7037 1.8848 -1.1596 20 8 7.6880 2.8144 -1.0641 21 6 8.4674 3.0567 -2.2370 22 6 5.9109 1.6040 -0.0513 23 9 6.1144 2.2499 1.1178 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3576 2.1322 0.0747 28 1 2.6330 1.3959 -0.9250 29 1 1.5732 0.3340 2.3362 30 1 2.9605 1.0127 3.2210 31 1 -0.1129 1.4713 5.3249 32 1 4.6302 0.2938 1.9219 33 1 3.5676 -0.6564 0.8558 34 1 3.9742 -0.7408 -1.5016 35 1 5.4312 -0.1510 -3.3922 36 1 8.9637 2.1348 -2.5403 37 1 7.8168 3.4006 -3.0411 38 1 9.2162 3.8198 -2.0245 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894586111.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:23:25 Heat of formation + Delta-G solvation = -36.481704 kcal Electronic energy + Delta-G solvation = -21997.943501 eV Core-core repulsion = 18562.545499 eV Total energy + Delta-G solvation = -3435.398002 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.82385 -41.59007 -39.60417 -38.51691 -34.91941 -34.44950 -32.97286 -31.50579 -29.45427 -28.44105 -27.63958 -25.90004 -24.34767 -23.32525 -22.44340 -20.44479 -19.00981 -18.79419 -18.35734 -18.26216 -17.52598 -16.93734 -16.40830 -16.18621 -15.95522 -15.80027 -15.65922 -15.35350 -14.99495 -14.31093 -14.13177 -14.01856 -13.77250 -13.57666 -13.13926 -12.97027 -12.67272 -12.64222 -12.52598 -12.27580 -12.19885 -12.12558 -11.99088 -11.36292 -10.84403 -10.67400 -10.55486 -10.13240 -9.42694 -8.99133 -8.17026 -6.25355 -0.06909 0.03051 1.39575 1.41264 1.49215 1.52389 1.92594 2.40724 2.55675 3.11967 3.15822 3.29710 3.39018 3.66733 3.87167 3.91977 4.09784 4.32942 4.41778 4.44246 4.48992 4.51965 4.60201 4.69621 4.74511 4.88607 4.99144 5.04815 5.15393 5.22330 5.33934 5.37793 5.66103 5.75949 5.94036 6.10227 6.13046 6.35600 6.58707 6.65227 6.89348 7.43160 8.93053 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.020790 B = 0.004838 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.481501 B = 5786.565188 C = 6568.699279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.186 4.186 3 C 0.092 3.908 4 N -0.536 5.536 5 C 0.210 3.790 6 C -0.516 4.516 7 H 0.053 0.947 8 C 0.009 3.991 9 N -0.930 5.930 10 Si 0.959 3.041 11 H -0.271 1.271 12 H -0.282 1.282 13 H -0.271 1.271 14 C 0.090 3.910 15 C -0.031 4.031 16 C -0.168 4.168 17 C 0.137 3.863 18 N -0.522 5.522 19 C 0.281 3.719 20 O -0.325 6.325 21 C 0.037 3.963 22 C 0.018 3.982 23 F -0.139 7.139 24 H 0.084 0.916 25 H 0.107 0.893 26 H 0.118 0.882 27 H 0.058 0.942 28 H 0.084 0.916 29 H -0.007 1.007 30 H -0.007 1.007 31 H 0.263 0.737 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.173 0.827 35 H 0.212 0.788 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.039 -4.346 -16.827 20.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.205 4.205 3 C -0.035 4.035 4 N -0.259 5.259 5 C 0.084 3.916 6 C -0.554 4.554 7 H 0.071 0.929 8 C -0.189 4.189 9 N -0.571 5.571 10 Si 0.784 3.216 11 H -0.196 1.196 12 H -0.208 1.208 13 H -0.196 1.196 14 C -0.038 4.038 15 C -0.040 4.040 16 C -0.188 4.188 17 C -0.018 4.018 18 N -0.246 5.246 19 C 0.102 3.898 20 O -0.232 6.232 21 C -0.057 4.057 22 C -0.005 4.005 23 F -0.118 7.118 24 H 0.102 0.898 25 H 0.126 0.874 26 H 0.136 0.864 27 H 0.077 0.923 28 H 0.102 0.898 29 H 0.011 0.989 30 H 0.011 0.989 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.191 0.809 35 H 0.228 0.772 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 10.845 -3.512 -17.083 20.537 hybrid contribution -1.337 -0.042 1.609 2.093 sum 9.508 -3.554 -15.474 18.506 Atomic orbital electron populations 1.23853 0.96238 1.01684 0.99845 1.23497 0.96803 0.99447 1.00768 1.21217 0.94261 0.94824 0.93222 1.62285 1.13510 1.46518 1.03588 1.19383 0.91176 0.95746 0.85258 1.21352 1.23383 0.99734 1.10966 0.92869 1.25737 0.97983 0.99357 0.95844 1.70064 1.38921 1.31185 1.16915 0.85539 0.78988 0.79767 0.77277 1.19618 1.20802 1.19601 1.20945 0.92833 0.95005 0.95004 1.20337 0.92788 0.93265 0.97586 1.22208 1.02910 1.02771 0.90891 1.23148 0.87607 0.90770 1.00288 1.67494 1.23481 1.11792 1.21828 1.19897 0.89717 0.90828 0.89387 1.86287 1.43409 1.53348 1.40189 1.23137 0.94386 1.02729 0.85474 1.17841 1.00784 0.99605 0.82226 1.91481 1.94414 1.80184 1.45682 0.89801 0.87435 0.86386 0.92308 0.89788 0.98906 0.98889 0.92813 0.91545 0.91325 0.80910 0.77196 0.91579 0.91954 0.86183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.83 14.32 67.78 0.97 -4.86 16 2 C -0.19 -6.06 7.39 25.65 0.19 -5.87 16 3 C 0.09 3.39 5.45 85.56 0.47 3.86 16 4 N -0.54 -22.88 4.65 -909.93 -4.23 -27.11 16 5 C 0.21 11.02 4.57 85.55 0.39 11.41 16 6 C -0.52 -29.44 8.53 25.60 0.22 -29.22 16 7 H 0.05 3.06 7.62 -2.91 -0.02 3.04 16 8 C 0.01 0.51 5.46 84.66 0.46 0.97 16 9 N -0.93 -55.66 13.29 21.45 0.28 -55.38 16 10 Si 0.96 44.94 29.54 68.60 2.03 46.97 16 11 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 12 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 13 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 14 C 0.09 3.14 4.74 85.56 0.41 3.55 16 15 C -0.03 -0.93 4.59 -19.65 -0.09 -1.02 16 16 C -0.17 -3.50 8.75 22.36 0.20 -3.30 16 17 C 0.14 2.51 11.17 84.62 0.95 3.45 16 18 N -0.52 -12.71 9.22 -308.78 -2.85 -15.55 16 19 C 0.28 8.47 7.50 84.85 0.64 9.10 16 20 O -0.32 -9.47 10.35 -90.52 -0.94 -10.40 16 21 C 0.04 0.69 10.38 113.37 1.18 1.87 16 22 C 0.02 0.62 7.30 22.55 0.16 0.78 16 23 F -0.14 -5.63 16.63 44.97 0.75 -4.88 16 24 H 0.08 2.94 7.84 -2.91 -0.02 2.92 16 25 H 0.11 3.02 8.06 -2.91 -0.02 2.99 16 26 H 0.12 3.31 6.84 -2.91 -0.02 3.29 16 27 H 0.06 2.45 7.03 -2.39 -0.02 2.44 16 28 H 0.08 2.65 6.37 -2.39 -0.02 2.64 16 29 H -0.01 -0.37 6.67 -2.39 -0.02 -0.39 16 30 H -0.01 -0.40 7.82 -2.38 -0.02 -0.42 16 31 H 0.26 14.87 8.31 -92.70 -0.77 14.10 16 32 H 0.07 2.55 7.74 -2.39 -0.02 2.53 16 33 H 0.07 2.10 6.31 -2.38 -0.02 2.08 16 34 H 0.17 2.58 8.06 -2.91 -0.02 2.56 16 35 H 0.21 1.86 8.06 -2.91 -0.02 1.84 16 36 H 0.07 1.12 8.10 -2.39 -0.02 1.10 16 37 H 0.06 1.12 8.10 -2.39 -0.02 1.10 16 38 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -69.98 326.22 2.23 -67.75 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: 1.06 Total: 7.86 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: 6.13 Total: -9.26 kcal Atomic # 7 Polarization: -91.25 SS G_CDS: -6.79 Total: -98.04 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: -0.94 Total: -10.40 kcal Atomic # 9 Polarization: -5.63 SS G_CDS: 0.75 Total: -4.88 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -69.98 2.23 -67.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894586111.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.268 kcal (2) G-P(sol) polarization free energy of solvation -69.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds