Wall clock time and date at job start Tue Mar 31 2020 01:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 O 1.42894 * 109.47263 * 179.97438 * 9 7 2 11 11 C 1.42906 * 114.00137 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47212 * 179.97438 * 11 10 9 13 13 O 1.45200 * 109.46724 * 65.00143 * 12 11 10 14 14 C 1.34238 * 116.99457 * 179.97438 * 13 12 11 15 15 O 1.20825 * 120.00131 * 359.97438 * 14 13 12 16 16 C 1.50704 * 119.99654 * 180.02562 * 14 13 12 17 17 H 1.09001 * 115.50877 * 34.63894 * 16 14 13 18 18 C 1.53001 * 117.42477 * 180.02562 * 16 14 13 19 19 H 1.08993 * 119.99252 * 355.25165 * 18 16 14 20 20 C 1.53004 * 117.42578 * 249.38034 * 16 14 13 21 21 H 1.09001 * 119.98434 * 4.74191 * 20 16 14 22 22 C 1.58246 * 116.80208 * 161.83922 * 20 16 14 23 23 H 1.08996 * 116.20199 * 261.82295 * 22 20 16 24 24 C 1.55935 * 104.93921 * 132.36802 * 22 20 16 25 25 C 1.54583 * 104.63996 * 289.65441 * 24 22 20 26 26 C 1.55928 * 104.64835 * 359.97438 * 25 24 22 27 27 H 1.08993 * 115.92528 * 199.16076 * 26 25 24 28 28 C 1.56949 * 101.40928 * 325.98343 * 26 25 24 29 29 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 31 31 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 32 32 H 1.09001 * 109.46459 * 300.00527 * 11 10 9 33 33 H 1.09006 * 109.46659 * 59.99689 * 11 10 9 34 34 H 1.08996 * 109.47051 * 184.99803 * 12 11 10 35 35 H 1.08994 * 109.47050 * 304.99783 * 12 11 10 36 36 H 1.09002 * 110.39842 * 170.86920 * 24 22 20 37 37 H 1.08996 * 110.49843 * 48.49373 * 24 22 20 38 38 H 1.09005 * 110.40418 * 241.20931 * 25 24 22 39 39 H 1.08995 * 110.50009 * 118.84292 * 25 24 22 40 40 H 1.09000 * 112.02894 * 170.49811 * 28 26 25 41 41 H 1.09002 * 112.02691 * 297.02160 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 2.1797 -3.5852 0.0005 11 6 1.5652 -4.8754 0.0011 12 6 2.6482 -5.9562 0.0004 13 8 3.4003 -5.8883 1.2406 14 6 4.3946 -6.7761 1.3995 15 8 4.6283 -7.5833 0.5314 16 6 5.2185 -6.7667 2.6614 17 1 4.6804 -6.5013 3.5714 18 6 6.3370 -7.8038 2.7804 19 1 6.4627 -8.5608 2.0064 20 6 6.6757 -6.3140 2.5482 21 1 7.0581 -5.9414 1.5979 22 6 7.3956 -5.8839 3.8901 23 1 7.4371 -4.8137 4.0924 24 6 8.7664 -6.6267 3.8669 25 6 8.4080 -8.1150 4.0818 26 6 6.8545 -8.1312 4.2153 27 1 6.4259 -9.0156 4.6866 28 6 6.5908 -6.7634 4.9383 29 1 -0.4850 -0.8401 -0.0004 30 1 0.6241 -2.5566 0.8903 31 1 0.6247 -2.5571 -0.8897 32 1 0.9453 -4.9821 0.8913 33 1 0.9447 -4.9827 -0.8887 34 1 2.1822 -6.9374 -0.0887 35 1 3.3210 -5.7957 -0.8419 36 1 9.4059 -6.2695 4.6741 37 1 9.2586 -6.4896 2.9041 38 1 8.8713 -8.4895 4.9946 39 1 8.7223 -8.7109 3.2250 40 1 5.5295 -6.5172 4.9730 41 1 7.0460 -6.7297 5.9282 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000910062898.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:54 Heat of formation + Delta-G solvation = -102.627318 kcal Electronic energy + Delta-G solvation = -21490.046331 eV Core-core repulsion = 18142.947594 eV Total energy + Delta-G solvation = -3347.098737 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.52527 -39.91435 -37.19288 -36.11587 -33.85984 -33.04845 -30.19473 -29.15319 -28.34776 -26.52719 -25.30270 -22.58698 -22.29900 -21.94406 -21.09795 -19.30403 -18.87591 -17.99120 -17.07669 -16.72657 -16.47184 -16.13091 -15.64579 -15.28104 -14.80112 -14.08630 -13.72486 -13.42790 -13.29322 -13.10953 -12.58066 -12.49605 -11.88632 -11.85388 -11.74124 -11.72608 -11.55965 -11.44773 -11.31189 -11.18525 -10.73915 -10.61287 -10.55380 -10.44297 -10.24279 -10.10801 -10.09245 -9.91596 -8.93629 -8.65963 -8.28450 -6.48336 -4.17020 2.09529 2.61438 3.42680 3.45487 3.50636 3.64325 4.03677 4.13584 4.20805 4.38058 4.62683 4.63681 4.69942 4.77466 4.84142 4.95629 5.00211 5.08363 5.14497 5.15798 5.25982 5.29717 5.37464 5.49004 5.64290 5.66012 5.73738 5.77049 5.80045 5.82358 5.84185 5.90123 5.98039 6.01004 6.06968 6.55545 6.70079 7.08632 7.82146 7.85498 8.13732 8.60118 8.77684 9.53405 10.92006 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.019369 B = 0.003351 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.227776 B = 8353.657820 C = 9417.096451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.017 3.983 3 Si 1.080 2.920 4 H -0.281 1.281 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.597 4.597 8 H 0.061 0.939 9 C 0.185 3.815 10 O -0.382 6.382 11 C 0.059 3.941 12 C 0.075 3.925 13 O -0.336 6.336 14 C 0.493 3.507 15 O -0.517 6.517 16 C -0.145 4.145 17 H 0.137 0.863 18 C -0.130 4.130 19 H 0.124 0.876 20 C -0.129 4.129 21 H 0.122 0.878 22 C -0.070 4.070 23 H 0.106 0.894 24 C -0.118 4.118 25 C -0.117 4.117 26 C -0.073 4.073 27 H 0.102 0.898 28 C -0.141 4.141 29 H 0.267 0.733 30 H -0.002 1.002 31 H -0.004 1.004 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.081 0.919 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.124 -17.089 9.357 24.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.186 4.186 3 Si 0.906 3.094 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.635 4.635 8 H 0.079 0.921 9 C 0.111 3.889 10 O -0.301 6.301 11 C -0.018 4.018 12 C 0.001 3.999 13 O -0.251 6.251 14 C 0.337 3.663 15 O -0.406 6.406 16 C -0.163 4.163 17 H 0.155 0.845 18 C -0.149 4.149 19 H 0.141 0.859 20 C -0.147 4.147 21 H 0.139 0.861 22 C -0.088 4.088 23 H 0.124 0.876 24 C -0.155 4.155 25 C -0.154 4.154 26 C -0.091 4.091 27 H 0.120 0.880 28 C -0.178 4.178 29 H 0.077 0.923 30 H 0.015 0.985 31 H 0.014 0.986 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.099 0.901 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 14.182 -15.639 9.060 22.973 hybrid contribution -0.387 -1.870 -0.354 1.942 sum 13.794 -17.508 8.706 23.929 Atomic orbital electron populations 1.70808 1.06831 1.30408 1.46629 1.25954 0.96409 1.02713 0.93529 0.83397 0.74724 0.74436 0.76801 1.20606 1.21142 1.21196 1.21900 0.95497 0.90353 1.55752 0.92086 1.20324 0.89391 0.84948 0.94241 1.87953 1.34659 1.12392 1.95120 1.22369 0.93437 0.85487 1.00546 1.23197 0.93618 0.98695 0.84375 1.86589 1.43353 1.53766 1.41434 1.22478 0.78785 0.77754 0.87313 1.90627 1.68215 1.38381 1.43416 1.21837 0.91043 1.07302 0.96154 0.84507 1.23704 0.98680 0.93100 0.99368 0.85854 1.24118 0.92373 0.98062 1.00143 0.86053 1.23909 0.94157 0.99109 0.91611 0.87634 1.22508 0.96216 0.94823 1.01956 1.22521 0.94520 0.96697 1.01688 1.23192 0.95395 0.97922 0.92582 0.88005 1.24089 1.00632 0.94895 0.98143 0.92326 0.98478 0.98627 0.93142 0.91912 0.90303 0.90466 0.91321 0.91354 0.91482 0.91438 0.90110 0.90503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.06 13.65 55.43 0.76 -27.31 16 2 C 0.02 0.50 5.46 -17.82 -0.10 0.41 16 3 Si 1.08 25.60 29.90 -169.99 -5.08 20.52 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 7 C -0.60 -18.04 9.43 -34.44 -0.32 -18.36 16 8 H 0.06 1.85 7.81 -52.48 -0.41 1.44 16 9 C 0.19 5.13 5.00 36.01 0.18 5.31 16 10 O -0.38 -9.53 10.30 -38.80 -0.40 -9.93 16 11 C 0.06 1.11 6.33 37.16 0.24 1.35 16 12 C 0.07 1.24 5.84 37.16 0.22 1.46 16 13 O -0.34 -5.94 10.19 -42.05 -0.43 -6.37 16 14 C 0.49 7.79 7.74 36.01 0.28 8.07 16 15 O -0.52 -8.99 16.10 -18.75 -0.30 -9.29 16 16 C -0.14 -1.78 5.51 -91.77 -0.51 -2.28 16 17 H 0.14 1.52 5.96 -51.93 -0.31 1.21 16 18 C -0.13 -1.34 5.86 -88.20 -0.52 -1.86 16 19 H 0.12 1.37 7.83 -51.93 -0.41 0.97 16 20 C -0.13 -1.41 6.42 -86.92 -0.56 -1.97 16 21 H 0.12 1.42 8.14 -51.93 -0.42 1.00 16 22 C -0.07 -0.61 5.24 -82.98 -0.43 -1.04 16 23 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 24 C -0.12 -0.86 6.24 -24.33 -0.15 -1.02 16 25 C -0.12 -0.81 6.22 -24.33 -0.15 -0.96 16 26 C -0.07 -0.57 5.13 -85.31 -0.44 -1.01 16 27 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 28 C -0.14 -1.11 6.36 -21.41 -0.14 -1.24 16 29 H 0.27 8.14 7.22 -40.82 -0.29 7.85 16 30 H 0.00 -0.07 8.01 -51.93 -0.42 -0.48 16 31 H 0.00 -0.11 8.01 -51.93 -0.42 -0.52 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.08 1.09 8.13 -51.93 -0.42 0.67 16 35 H 0.08 1.31 8.13 -51.93 -0.42 0.89 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.52 8.06 -51.93 -0.42 0.10 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.48 8.05 -51.93 -0.42 0.06 16 40 H 0.08 0.67 5.91 -51.93 -0.31 0.36 16 41 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 336.48 15.07 5.07 5.07 Total: -1.00 -34.05 336.48 -9.21 -43.26 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -6.42 Total: -2.79 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -2.40 Total: -13.16 kcal Atomic # 7 Polarization: -28.06 SS G_CDS: 0.76 Total: -27.31 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -1.13 Total: -25.59 kcal Atomic # 14 Polarization: 25.60 SS G_CDS: -5.08 Total: 20.52 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.05 -9.21 -43.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000910062898.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.368 kcal (2) G-P(sol) polarization free energy of solvation -34.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds