Wall clock time and date at job start Tue Mar 31 2020 01:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 O 1.42894 * 109.47263 * 179.97438 * 9 7 2 11 11 C 1.42906 * 114.00137 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47212 * 179.97438 * 11 10 9 13 13 O 1.45200 * 109.46724 * 65.00143 * 12 11 10 14 14 C 1.34238 * 116.99457 * 179.97438 * 13 12 11 15 15 O 1.20825 * 120.00131 * 359.97438 * 14 13 12 16 16 C 1.50704 * 119.99654 * 180.02562 * 14 13 12 17 17 H 1.09001 * 115.50877 * 34.63894 * 16 14 13 18 18 C 1.53001 * 117.42477 * 180.02562 * 16 14 13 19 19 H 1.08993 * 119.99252 * 355.25165 * 18 16 14 20 20 C 1.53004 * 117.42578 * 249.38034 * 16 14 13 21 21 H 1.09001 * 119.98434 * 4.74191 * 20 16 14 22 22 C 1.58246 * 116.80208 * 161.83922 * 20 16 14 23 23 H 1.08996 * 116.20199 * 261.82295 * 22 20 16 24 24 C 1.55935 * 104.93921 * 132.36802 * 22 20 16 25 25 C 1.54583 * 104.63996 * 289.65441 * 24 22 20 26 26 C 1.55928 * 104.64835 * 359.97438 * 25 24 22 27 27 H 1.08993 * 115.92528 * 199.16076 * 26 25 24 28 28 C 1.56949 * 101.40928 * 325.98343 * 26 25 24 29 29 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 31 31 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 32 32 H 1.09001 * 109.46459 * 300.00527 * 11 10 9 33 33 H 1.09006 * 109.46659 * 59.99689 * 11 10 9 34 34 H 1.08996 * 109.47051 * 184.99803 * 12 11 10 35 35 H 1.08994 * 109.47050 * 304.99783 * 12 11 10 36 36 H 1.09002 * 110.39842 * 170.86920 * 24 22 20 37 37 H 1.08996 * 110.49843 * 48.49373 * 24 22 20 38 38 H 1.09005 * 110.40418 * 241.20931 * 25 24 22 39 39 H 1.08995 * 110.50009 * 118.84292 * 25 24 22 40 40 H 1.09000 * 112.02894 * 170.49811 * 28 26 25 41 41 H 1.09002 * 112.02691 * 297.02160 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 2.1797 -3.5852 0.0005 11 6 1.5652 -4.8754 0.0011 12 6 2.6482 -5.9562 0.0004 13 8 3.4003 -5.8883 1.2406 14 6 4.3946 -6.7761 1.3995 15 8 4.6283 -7.5833 0.5314 16 6 5.2185 -6.7667 2.6614 17 1 4.6804 -6.5013 3.5714 18 6 6.3370 -7.8038 2.7804 19 1 6.4627 -8.5608 2.0064 20 6 6.6757 -6.3140 2.5482 21 1 7.0581 -5.9414 1.5979 22 6 7.3956 -5.8839 3.8901 23 1 7.4371 -4.8137 4.0924 24 6 8.7664 -6.6267 3.8669 25 6 8.4080 -8.1150 4.0818 26 6 6.8545 -8.1312 4.2153 27 1 6.4259 -9.0156 4.6866 28 6 6.5908 -6.7634 4.9383 29 1 -0.4850 -0.8401 -0.0004 30 1 0.6241 -2.5566 0.8903 31 1 0.6247 -2.5571 -0.8897 32 1 0.9453 -4.9821 0.8913 33 1 0.9447 -4.9827 -0.8887 34 1 2.1822 -6.9374 -0.0887 35 1 3.3210 -5.7957 -0.8419 36 1 9.4059 -6.2695 4.6741 37 1 9.2586 -6.4896 2.9041 38 1 8.8713 -8.4895 4.9946 39 1 8.7223 -8.7109 3.2250 40 1 5.5295 -6.5172 4.9730 41 1 7.0460 -6.7297 5.9282 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000910062898.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:54 Heat of formation + Delta-G solvation = -121.771384 kcal Electronic energy + Delta-G solvation = -21490.876480 eV Core-core repulsion = 18142.947594 eV Total energy + Delta-G solvation = -3347.928886 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.41501 -41.07494 -38.94983 -37.59197 -35.28191 -34.66616 -31.76498 -29.80765 -28.99538 -28.62205 -26.43375 -24.80085 -23.68622 -22.64479 -22.18989 -20.16018 -19.58310 -19.27035 -19.13764 -18.03907 -17.95096 -17.00053 -16.81536 -16.56145 -16.36420 -15.76240 -15.41379 -14.78213 -14.63997 -14.09340 -13.95229 -13.64488 -13.60737 -13.29104 -13.03718 -12.57149 -12.54702 -12.44923 -12.31732 -12.17350 -12.08673 -11.92852 -11.89944 -11.85421 -11.55123 -11.22065 -10.93416 -10.88513 -10.87444 -10.71600 -10.42907 -8.85931 -6.57194 0.88547 1.44499 1.52367 1.61154 1.82698 2.47305 2.59680 2.86917 3.01252 3.19984 3.43843 3.48156 3.75545 3.78273 3.83961 3.89900 3.95997 4.03484 4.18921 4.25681 4.32755 4.36529 4.41361 4.46042 4.55645 4.57664 4.65647 4.81649 4.85370 4.96963 5.01329 5.13128 5.16412 5.20155 5.24069 5.28791 5.36427 5.48399 5.62092 5.88053 6.29717 6.54631 6.59756 7.23134 8.55623 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.019369 B = 0.003351 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.227776 B = 8353.657820 C = 9417.096451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.027 4.027 3 Si 1.128 2.872 4 H -0.274 1.274 5 H -0.267 1.267 6 H -0.268 1.268 7 C -0.628 4.628 8 H 0.051 0.949 9 C 0.195 3.805 10 O -0.404 6.404 11 C 0.052 3.948 12 C 0.077 3.923 13 O -0.356 6.356 14 C 0.490 3.510 15 O -0.538 6.538 16 C -0.160 4.160 17 H 0.149 0.851 18 C -0.118 4.118 19 H 0.113 0.887 20 C -0.138 4.138 21 H 0.106 0.894 22 C -0.071 4.071 23 H 0.106 0.894 24 C -0.116 4.116 25 C -0.114 4.114 26 C -0.066 4.066 27 H 0.118 0.882 28 C -0.138 4.138 29 H 0.257 0.743 30 H -0.013 1.013 31 H -0.011 1.011 32 H 0.059 0.941 33 H 0.085 0.915 34 H 0.111 0.889 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.061 0.939 38 H 0.086 0.914 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.521 -17.415 10.679 25.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.225 4.225 3 Si 0.946 3.054 4 H -0.199 1.199 5 H -0.192 1.192 6 H -0.193 1.193 7 C -0.665 4.665 8 H 0.070 0.930 9 C 0.120 3.880 10 O -0.324 6.324 11 C -0.025 4.025 12 C 0.004 3.996 13 O -0.272 6.272 14 C 0.336 3.664 15 O -0.429 6.429 16 C -0.179 4.179 17 H 0.166 0.834 18 C -0.137 4.137 19 H 0.131 0.869 20 C -0.156 4.156 21 H 0.124 0.876 22 C -0.089 4.089 23 H 0.124 0.876 24 C -0.153 4.153 25 C -0.152 4.152 26 C -0.084 4.084 27 H 0.136 0.864 28 C -0.175 4.175 29 H 0.066 0.934 30 H 0.004 0.996 31 H 0.007 0.993 32 H 0.077 0.923 33 H 0.103 0.897 34 H 0.129 0.871 35 H 0.088 0.912 36 H 0.103 0.897 37 H 0.080 0.920 38 H 0.105 0.895 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 15.576 -16.009 10.384 24.632 hybrid contribution -0.838 -1.877 -0.798 2.205 sum 14.738 -17.886 9.585 25.079 Atomic orbital electron populations 1.70930 1.07674 1.29908 1.47765 1.27613 0.96472 1.06519 0.91847 0.82828 0.74084 0.70166 0.78295 1.19922 1.19161 1.19274 1.22275 0.95391 0.92153 1.56718 0.93016 1.20019 0.89218 0.85496 0.93269 1.87892 1.35111 1.14121 1.95270 1.22704 0.94574 0.83153 1.02040 1.23205 0.93116 0.99281 0.84027 1.86586 1.44164 1.54693 1.41779 1.23145 0.78266 0.76850 0.88158 1.90602 1.68663 1.39112 1.44484 1.21968 0.91415 1.09700 0.94771 0.83373 1.23807 0.96581 0.92305 1.00964 0.86939 1.24255 0.91226 0.99117 1.00990 0.87566 1.23996 0.94953 0.99593 0.90344 0.87561 1.22524 0.95466 0.95022 1.02305 1.22535 0.93714 0.96335 1.02576 1.23295 0.95974 0.98562 0.90573 0.86409 1.24106 1.00284 0.94380 0.98710 0.93408 0.99571 0.99296 0.92296 0.89678 0.87092 0.91192 0.89710 0.91982 0.89534 0.91696 0.90724 0.88618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.37 13.65 21.45 0.29 -57.07 16 2 C -0.03 -1.58 5.46 84.65 0.46 -1.12 16 3 Si 1.13 50.61 29.90 68.60 2.05 52.66 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 5 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 6 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 7 C -0.63 -38.44 9.43 25.60 0.24 -38.20 16 8 H 0.05 3.18 7.81 -2.91 -0.02 3.16 16 9 C 0.20 11.01 5.00 71.24 0.36 11.36 16 10 O -0.40 -20.49 10.30 -145.57 -1.50 -21.99 16 11 C 0.05 1.94 6.33 71.98 0.46 2.39 16 12 C 0.08 2.53 5.84 71.98 0.42 2.96 16 13 O -0.36 -12.71 10.19 -48.85 -0.50 -13.21 16 14 C 0.49 15.70 7.74 71.24 0.55 16.25 16 15 O -0.54 -18.91 16.10 21.97 0.35 -18.56 16 16 C -0.16 -3.92 5.51 -11.54 -0.06 -3.99 16 17 H 0.15 3.23 5.96 -2.39 -0.01 3.22 16 18 C -0.12 -2.35 5.86 -9.23 -0.05 -2.41 16 19 H 0.11 2.49 7.83 -2.39 -0.02 2.47 16 20 C -0.14 -3.00 6.42 -8.40 -0.05 -3.06 16 21 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 22 C -0.07 -1.13 5.24 -5.84 -0.03 -1.16 16 23 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 24 C -0.12 -1.46 6.24 32.15 0.20 -1.26 16 25 C -0.11 -1.29 6.22 32.15 0.20 -1.09 16 26 C -0.07 -0.88 5.13 -7.35 -0.04 -0.92 16 27 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 28 C -0.14 -1.86 6.36 34.04 0.22 -1.64 16 29 H 0.26 15.96 7.22 -92.71 -0.67 15.29 16 30 H -0.01 -0.77 8.01 -2.39 -0.02 -0.79 16 31 H -0.01 -0.60 8.01 -2.38 -0.02 -0.62 16 32 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.09 2.79 8.14 -2.38 -0.02 2.77 16 34 H 0.11 2.93 8.13 -2.39 -0.02 2.91 16 35 H 0.07 2.39 8.13 -2.39 -0.02 2.37 16 36 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.06 0.86 8.06 -2.39 -0.02 0.84 16 38 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 39 H 0.06 0.79 8.05 -2.39 -0.02 0.77 16 40 H 0.07 1.11 5.91 -2.39 -0.01 1.10 16 41 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -73.42 336.48 4.68 -68.75 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: 1.11 Total: 11.31 kcal Atomic # 6 Polarization: -24.75 SS G_CDS: 2.86 Total: -21.88 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: 0.29 Total: -57.07 kcal Atomic # 8 Polarization: -52.11 SS G_CDS: -1.64 Total: -53.76 kcal Atomic # 14 Polarization: 50.61 SS G_CDS: 2.05 Total: 52.66 kcal Total: -73.42 4.68 -68.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000910062898.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.026 kcal (2) G-P(sol) polarization free energy of solvation -73.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds