Wall clock time and date at job start Tue Mar 31 2020 01:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50703 * 119.99514 * 2 1 4 4 C 1.50694 * 120.00035 * 179.97438 * 2 1 3 5 5 H 1.08992 * 110.42587 * 342.65167 * 4 2 1 6 6 O 1.44430 * 110.37137 * 220.33613 * 4 2 1 7 7 C 1.44424 * 105.27443 * 200.65828 * 6 4 2 8 8 C 1.54479 * 104.80510 * 40.51435 * 7 6 4 9 9 C 1.54481 * 110.36930 * 104.96179 * 4 2 1 10 10 H 1.09000 * 110.51192 * 261.45100 * 9 4 2 11 11 C 1.50692 * 110.63092 * 24.10676 * 9 4 2 12 12 O 1.20826 * 120.00387 * 88.37944 * 11 9 4 13 13 O 1.34232 * 120.00401 * 268.38365 * 11 9 4 14 14 C 1.45195 * 117.00728 * 184.72329 * 13 11 9 15 15 C 1.53002 * 109.47342 * 184.93832 * 14 13 11 16 16 C 1.50693 * 115.54738 * 66.62085 * 15 14 13 17 17 H 1.07998 * 120.00116 * 264.84468 * 16 15 14 18 18 C 1.37881 * 120.00193 * 84.85009 * 16 15 14 19 19 N 1.31518 * 120.00080 * 177.06812 * 18 16 15 20 20 Si 1.86799 * 119.99824 * 357.07435 * 18 16 15 21 21 H 1.48502 * 109.47323 * 90.23961 * 20 18 16 22 22 H 1.48499 * 109.47003 * 210.23989 * 20 18 16 23 23 H 1.48498 * 109.47024 * 330.23970 * 20 18 16 24 24 C 1.53003 * 117.49620 * 280.94916 * 15 14 13 25 25 C 1.53004 * 117.49753 * 212.28985 * 15 14 13 26 26 H 1.07998 * 119.99746 * 0.02562 * 1 2 3 27 27 H 1.07998 * 119.99190 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47388 * 274.70090 * 3 2 1 29 29 H 1.08995 * 109.47391 * 34.71158 * 3 2 1 30 30 H 1.09002 * 109.46913 * 154.70783 * 3 2 1 31 31 H 1.09003 * 110.37412 * 159.34895 * 7 6 4 32 32 H 1.09000 * 110.37539 * 281.68264 * 7 6 4 33 33 H 1.09008 * 110.51091 * 94.66147 * 8 7 6 34 34 H 1.08999 * 110.51783 * 217.37260 * 8 7 6 35 35 H 1.08994 * 109.46955 * 304.94273 * 14 13 11 36 36 H 1.09000 * 109.46859 * 64.93937 * 14 13 11 37 37 H 0.97000 * 119.99905 * 180.02562 * 19 18 16 38 38 H 1.08997 * 117.49862 * 0.02562 * 24 15 14 39 39 H 1.09007 * 117.49290 * 145.02149 * 24 15 14 40 40 H 1.08995 * 117.49774 * 214.98136 * 25 15 14 41 41 H 1.09002 * 117.49543 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0636 -1.3050 0.0006 5 1 1.4094 -2.1218 0.3055 6 8 3.2087 -1.2240 0.8769 7 6 4.0974 -2.2752 0.4399 8 6 4.0250 -2.2374 -1.1028 9 6 2.6562 -1.5844 -1.3984 10 1 2.0174 -2.2712 -1.9536 11 6 2.8386 -0.2993 -2.1640 12 8 3.8667 0.3265 -2.0579 13 8 1.8589 0.1503 -2.9639 14 6 2.1428 1.3369 -3.7511 15 6 0.8794 1.7668 -4.4994 16 6 -0.2540 2.2546 -3.6344 17 1 -1.0369 1.5734 -3.3353 18 6 -0.2917 3.5706 -3.2248 19 7 -1.3100 4.0105 -2.5183 20 14 1.1035 4.7287 -3.6736 21 1 0.8022 5.3881 -4.9697 22 1 1.2501 5.7605 -2.6157 23 1 2.3675 3.9584 -3.7923 24 6 0.5170 0.9996 -5.7726 25 6 1.0592 2.4280 -5.8675 26 1 -0.5399 0.9353 -0.0004 27 1 -0.5399 -0.9354 -0.0004 28 1 2.1722 1.6620 -1.0241 29 1 1.5136 2.0422 0.5852 30 1 3.0498 1.1553 0.4391 31 1 5.1148 -2.0767 0.7770 32 1 3.7552 -3.2408 0.8122 33 1 4.8337 -1.6294 -1.5083 34 1 4.0629 -3.2470 -1.5119 35 1 2.4659 2.1419 -3.0912 36 1 2.9328 1.1162 -4.4689 37 1 -1.3367 4.9365 -2.2305 38 1 1.1783 0.1884 -6.0768 39 1 -0.5415 0.8481 -5.9847 40 1 0.3575 3.2155 -6.1419 41 1 2.0776 2.5570 -6.2341 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000923157784.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:50 Heat of formation + Delta-G solvation = -82.383178 kcal Electronic energy + Delta-G solvation = -23530.965004 eV Core-core repulsion = 20184.744119 eV Total energy + Delta-G solvation = -3346.220885 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.73299 -38.83538 -37.02713 -35.38600 -34.77046 -32.30669 -32.10742 -28.92629 -27.23672 -26.85203 -25.35548 -23.69437 -22.40153 -21.67207 -20.08051 -19.17420 -18.48570 -17.32632 -16.63123 -16.46910 -15.90213 -15.66436 -15.44237 -14.84697 -14.75502 -13.85593 -13.67174 -13.15101 -12.81989 -12.71722 -12.60095 -12.36890 -12.14608 -12.08570 -11.89609 -11.47923 -11.17149 -11.11996 -11.10701 -10.81688 -10.66799 -10.58484 -10.28510 -10.10114 -9.90042 -9.76746 -9.60099 -9.03482 -8.66263 -8.59920 -8.57760 -6.12732 -4.14573 2.51276 2.63353 3.13294 3.26056 3.36342 3.39270 3.97753 4.36150 4.39025 4.68091 4.76861 4.97123 5.01415 5.10380 5.14335 5.26916 5.34159 5.38625 5.60258 5.64776 5.66269 5.70862 5.94457 5.96440 5.97068 6.12084 6.15783 6.24781 6.29972 6.36994 6.40458 6.61133 6.66428 6.76379 6.92241 7.03622 7.05909 7.17240 7.23326 7.68442 8.31960 8.49661 8.92299 9.50062 10.98867 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.021066 B = 0.006540 C = 0.005868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.859782 B = 4280.443833 C = 4770.142745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.142 4.142 3 C -0.116 4.116 4 C 0.132 3.868 5 H 0.087 0.913 6 O -0.358 6.358 7 C 0.047 3.953 8 C -0.147 4.147 9 C -0.115 4.115 10 H 0.114 0.886 11 C 0.473 3.527 12 O -0.516 6.516 13 O -0.327 6.327 14 C 0.106 3.894 15 C -0.004 4.004 16 C -0.477 4.477 17 H 0.081 0.919 18 C 0.080 3.920 19 N -0.894 5.894 20 Si 0.869 3.131 21 H -0.276 1.276 22 H -0.291 1.291 23 H -0.261 1.261 24 C -0.172 4.172 25 C -0.191 4.191 26 H 0.114 0.886 27 H 0.095 0.905 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.042 0.958 37 H 0.264 0.736 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.883 -12.313 2.706 14.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.142 4.142 3 C -0.173 4.173 4 C 0.074 3.926 5 H 0.105 0.895 6 O -0.277 6.277 7 C -0.030 4.030 8 C -0.184 4.184 9 C -0.135 4.135 10 H 0.133 0.867 11 C 0.316 3.684 12 O -0.406 6.406 13 O -0.242 6.242 14 C 0.032 3.968 15 C -0.005 4.005 16 C -0.514 4.514 17 H 0.099 0.901 18 C -0.122 4.122 19 N -0.531 5.531 20 Si 0.696 3.304 21 H -0.202 1.202 22 H -0.217 1.217 23 H -0.185 1.185 24 C -0.209 4.209 25 C -0.229 4.229 26 H 0.132 0.868 27 H 0.113 0.887 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.112 0.888 32 H 0.079 0.921 33 H 0.113 0.887 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.108 0.892 40 H 0.112 0.888 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.109 -11.758 2.991 14.593 hybrid contribution 0.758 0.704 -0.541 1.167 sum 8.867 -11.054 2.450 14.381 Atomic orbital electron populations 1.23740 0.94632 1.02631 0.97445 1.21321 0.95130 0.94175 1.03537 1.20863 0.99878 0.93754 1.02803 1.21855 0.88091 0.96611 0.86001 0.89487 1.89218 1.30363 1.53445 1.54674 1.23388 0.95487 0.91313 0.92825 1.23052 0.96394 1.01554 0.97419 1.22444 0.99591 0.94155 0.97266 0.86742 1.22905 0.81545 0.86430 0.77539 1.90601 1.29500 1.57493 1.62975 1.86551 1.41522 1.44284 1.51856 1.23097 0.97233 0.84074 0.92374 1.19332 0.94626 0.99847 0.86739 1.20171 1.05919 0.95353 1.29951 0.90065 1.24924 0.95184 0.97786 0.94331 1.69875 1.29774 1.16274 1.37164 0.87033 0.84004 0.81115 0.78198 1.20191 1.21734 1.18541 1.22791 1.00713 0.92954 1.04467 1.23016 1.00395 0.96772 1.02694 0.86761 0.88702 0.91093 0.91887 0.91661 0.88783 0.92087 0.88724 0.89650 0.91228 0.93938 0.92562 0.90889 0.89177 0.88771 0.90892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 13.92 29.01 0.40 -2.10 16 2 C -0.14 -2.46 4.22 -101.07 -0.43 -2.89 16 3 C -0.12 -2.26 8.47 36.01 0.31 -1.96 16 4 C 0.13 1.92 3.43 -27.11 -0.09 1.83 16 5 H 0.09 1.04 7.94 -51.93 -0.41 0.63 16 6 O -0.36 -5.37 10.41 -35.23 -0.37 -5.74 16 7 C 0.05 0.51 7.63 37.93 0.29 0.80 16 8 C -0.15 -1.67 6.61 -25.16 -0.17 -1.84 16 9 C -0.11 -1.63 3.53 -90.20 -0.32 -1.95 16 10 H 0.11 1.36 8.14 -51.93 -0.42 0.94 16 11 C 0.47 8.78 4.04 36.00 0.15 8.92 16 12 O -0.52 -10.61 14.32 -18.75 -0.27 -10.87 16 13 O -0.33 -6.80 9.63 -39.26 -0.38 -7.18 16 14 C 0.11 2.33 4.71 37.16 0.18 2.50 16 15 C 0.00 -0.10 1.06 -155.66 -0.16 -0.27 16 16 C -0.48 -12.88 9.36 -34.44 -0.32 -13.21 16 17 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 18 C 0.08 2.23 5.47 -17.82 -0.10 2.14 16 19 N -0.89 -26.31 13.96 55.43 0.77 -25.54 16 20 Si 0.87 21.39 25.10 -169.99 -4.27 17.12 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 23 H -0.26 -6.18 5.54 56.52 0.31 -5.87 16 24 C -0.17 -3.43 9.96 -26.69 -0.27 -3.70 16 25 C -0.19 -3.98 7.76 -26.69 -0.21 -4.18 16 26 H 0.11 2.16 8.05 -52.49 -0.42 1.73 16 27 H 0.09 1.34 7.94 -52.49 -0.42 0.92 16 28 H 0.07 1.57 5.05 -51.93 -0.26 1.31 16 29 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 30 H 0.06 1.24 7.27 -51.93 -0.38 0.87 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.09 1.24 6.84 -51.92 -0.36 0.89 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 1.66 5.25 -51.93 -0.27 1.39 16 36 H 0.04 0.86 8.08 -51.93 -0.42 0.44 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 40 H 0.09 2.03 7.55 -51.93 -0.39 1.63 16 41 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 328.78 15.07 4.95 4.95 Total: -1.00 -30.83 328.78 -6.65 -37.48 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -6.36 Total: 5.66 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: -0.74 Total: -15.89 kcal Atomic # 7 Polarization: -26.31 SS G_CDS: 0.77 Total: -25.54 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -1.01 Total: -23.79 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.27 Total: 17.12 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.83 -6.65 -37.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923157784.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.903 kcal (2) G-P(sol) polarization free energy of solvation -30.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds