Wall clock time and date at job start Tue Mar 31 2020 01:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50703 * 119.99514 * 2 1 4 4 C 1.50694 * 120.00035 * 179.97438 * 2 1 3 5 5 H 1.08992 * 110.42587 * 342.65167 * 4 2 1 6 6 O 1.44430 * 110.37137 * 220.33613 * 4 2 1 7 7 C 1.44424 * 105.27443 * 200.65828 * 6 4 2 8 8 C 1.54479 * 104.80510 * 40.51435 * 7 6 4 9 9 C 1.54481 * 110.36930 * 104.96179 * 4 2 1 10 10 H 1.09000 * 110.51192 * 261.45100 * 9 4 2 11 11 C 1.50692 * 110.63092 * 24.10676 * 9 4 2 12 12 O 1.20826 * 120.00387 * 88.37944 * 11 9 4 13 13 O 1.34232 * 120.00401 * 268.38365 * 11 9 4 14 14 C 1.45195 * 117.00728 * 184.72329 * 13 11 9 15 15 C 1.53002 * 109.47342 * 184.93832 * 14 13 11 16 16 C 1.50693 * 115.54738 * 66.62085 * 15 14 13 17 17 H 1.07998 * 120.00116 * 264.84468 * 16 15 14 18 18 C 1.37881 * 120.00193 * 84.85009 * 16 15 14 19 19 N 1.31518 * 120.00080 * 177.06812 * 18 16 15 20 20 Si 1.86799 * 119.99824 * 357.07435 * 18 16 15 21 21 H 1.48502 * 109.47323 * 90.23961 * 20 18 16 22 22 H 1.48499 * 109.47003 * 210.23989 * 20 18 16 23 23 H 1.48498 * 109.47024 * 330.23970 * 20 18 16 24 24 C 1.53003 * 117.49620 * 280.94916 * 15 14 13 25 25 C 1.53004 * 117.49753 * 212.28985 * 15 14 13 26 26 H 1.07998 * 119.99746 * 0.02562 * 1 2 3 27 27 H 1.07998 * 119.99190 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47388 * 274.70090 * 3 2 1 29 29 H 1.08995 * 109.47391 * 34.71158 * 3 2 1 30 30 H 1.09002 * 109.46913 * 154.70783 * 3 2 1 31 31 H 1.09003 * 110.37412 * 159.34895 * 7 6 4 32 32 H 1.09000 * 110.37539 * 281.68264 * 7 6 4 33 33 H 1.09008 * 110.51091 * 94.66147 * 8 7 6 34 34 H 1.08999 * 110.51783 * 217.37260 * 8 7 6 35 35 H 1.08994 * 109.46955 * 304.94273 * 14 13 11 36 36 H 1.09000 * 109.46859 * 64.93937 * 14 13 11 37 37 H 0.97000 * 119.99905 * 180.02562 * 19 18 16 38 38 H 1.08997 * 117.49862 * 0.02562 * 24 15 14 39 39 H 1.09007 * 117.49290 * 145.02149 * 24 15 14 40 40 H 1.08995 * 117.49774 * 214.98136 * 25 15 14 41 41 H 1.09002 * 117.49543 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0636 -1.3050 0.0006 5 1 1.4094 -2.1218 0.3055 6 8 3.2087 -1.2240 0.8769 7 6 4.0974 -2.2752 0.4399 8 6 4.0250 -2.2374 -1.1028 9 6 2.6562 -1.5844 -1.3984 10 1 2.0174 -2.2712 -1.9536 11 6 2.8386 -0.2993 -2.1640 12 8 3.8667 0.3265 -2.0579 13 8 1.8589 0.1503 -2.9639 14 6 2.1428 1.3369 -3.7511 15 6 0.8794 1.7668 -4.4994 16 6 -0.2540 2.2546 -3.6344 17 1 -1.0369 1.5734 -3.3353 18 6 -0.2917 3.5706 -3.2248 19 7 -1.3100 4.0105 -2.5183 20 14 1.1035 4.7287 -3.6736 21 1 0.8022 5.3881 -4.9697 22 1 1.2501 5.7605 -2.6157 23 1 2.3675 3.9584 -3.7923 24 6 0.5170 0.9996 -5.7726 25 6 1.0592 2.4280 -5.8675 26 1 -0.5399 0.9353 -0.0004 27 1 -0.5399 -0.9354 -0.0004 28 1 2.1722 1.6620 -1.0241 29 1 1.5136 2.0422 0.5852 30 1 3.0498 1.1553 0.4391 31 1 5.1148 -2.0767 0.7770 32 1 3.7552 -3.2408 0.8122 33 1 4.8337 -1.6294 -1.5083 34 1 4.0629 -3.2470 -1.5119 35 1 2.4659 2.1419 -3.0912 36 1 2.9328 1.1162 -4.4689 37 1 -1.3367 4.9365 -2.2305 38 1 1.1783 0.1884 -6.0768 39 1 -0.5415 0.8481 -5.9847 40 1 0.3575 3.2155 -6.1419 41 1 2.0776 2.5570 -6.2341 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000923157784.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:50 Heat of formation + Delta-G solvation = -101.229148 kcal Electronic energy + Delta-G solvation = -23531.782227 eV Core-core repulsion = 20184.744119 eV Total energy + Delta-G solvation = -3347.038107 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.04538 -40.12359 -38.68532 -36.97132 -36.09075 -34.23833 -33.37654 -30.03660 -28.87608 -28.36268 -27.35110 -24.94580 -23.49513 -23.21827 -21.36289 -21.03170 -19.84161 -18.79848 -18.37111 -17.81642 -17.31108 -17.10109 -16.69384 -16.50948 -16.04825 -15.47743 -14.87224 -14.82585 -14.59135 -14.28803 -14.09403 -13.97726 -13.80246 -13.32216 -13.09523 -12.95683 -12.72875 -12.64265 -12.37195 -12.29419 -12.15297 -12.06432 -11.93075 -11.69969 -11.61395 -11.31807 -10.90595 -10.76887 -10.66127 -10.37038 -10.04300 -8.29846 -6.34036 1.15707 1.22642 1.27702 1.33040 1.40315 1.74021 2.32026 2.96363 3.03608 3.15197 3.34354 3.60776 3.77261 3.94442 3.99470 4.04591 4.16210 4.21228 4.22297 4.30812 4.38480 4.39560 4.52112 4.56769 4.67407 4.71632 4.81594 4.83489 4.86932 4.95210 5.00040 5.03633 5.10408 5.22283 5.44839 5.59600 5.65518 5.66697 5.72715 5.93511 6.32019 6.71990 6.85196 7.33478 8.85233 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.021066 B = 0.006540 C = 0.005868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.859782 B = 4280.443833 C = 4770.142745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.153 4.153 3 C -0.111 4.111 4 C 0.135 3.865 5 H 0.125 0.875 6 O -0.387 6.387 7 C 0.042 3.958 8 C -0.139 4.139 9 C -0.115 4.115 10 H 0.145 0.855 11 C 0.467 3.533 12 O -0.542 6.542 13 O -0.340 6.340 14 C 0.113 3.887 15 C -0.038 4.038 16 C -0.469 4.469 17 H 0.039 0.961 18 C 0.031 3.969 19 N -0.940 5.940 20 Si 0.918 3.082 21 H -0.259 1.259 22 H -0.299 1.299 23 H -0.247 1.247 24 C -0.149 4.149 25 C -0.183 4.183 26 H 0.081 0.919 27 H 0.130 0.870 28 H 0.039 0.961 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.072 0.928 34 H 0.126 0.874 35 H 0.041 0.959 36 H 0.064 0.936 37 H 0.264 0.736 38 H 0.105 0.895 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.531 -15.076 1.734 17.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.153 4.153 3 C -0.168 4.168 4 C 0.078 3.922 5 H 0.143 0.857 6 O -0.307 6.307 7 C -0.034 4.034 8 C -0.177 4.177 9 C -0.135 4.135 10 H 0.162 0.838 11 C 0.312 3.688 12 O -0.433 6.433 13 O -0.255 6.255 14 C 0.040 3.960 15 C -0.039 4.039 16 C -0.506 4.506 17 H 0.057 0.943 18 C -0.167 4.167 19 N -0.580 5.580 20 Si 0.743 3.257 21 H -0.184 1.184 22 H -0.227 1.227 23 H -0.170 1.170 24 C -0.186 4.186 25 C -0.221 4.221 26 H 0.099 0.901 27 H 0.148 0.852 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.119 0.881 32 H 0.114 0.886 33 H 0.091 0.909 34 H 0.144 0.856 35 H 0.059 0.941 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.123 0.877 39 H 0.104 0.896 40 H 0.102 0.898 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 9.773 -14.544 1.999 17.636 hybrid contribution 0.218 1.518 -0.190 1.545 sum 9.991 -13.026 1.810 16.516 Atomic orbital electron populations 1.23780 0.94713 1.02787 0.97354 1.21484 0.95405 0.94817 1.03586 1.20748 1.00208 0.95295 1.00536 1.21962 0.88443 0.95470 0.86324 0.85721 1.89192 1.31104 1.55391 1.54997 1.23683 0.95447 0.91787 0.92439 1.23103 0.93718 1.02971 0.97888 1.22718 1.02060 0.92140 0.96538 0.83753 1.23880 0.80577 0.87493 0.76866 1.90582 1.30442 1.58644 1.63610 1.86556 1.42792 1.43690 1.52478 1.22795 0.96918 0.84084 0.92248 1.19237 0.94156 1.03071 0.87440 1.20253 1.06052 0.94499 1.29842 0.94260 1.25603 0.97131 0.99467 0.94506 1.70007 1.31978 1.16628 1.39347 0.86221 0.82007 0.79192 0.78264 1.18427 1.22661 1.17043 1.22846 1.01278 0.93547 1.00976 1.23075 1.01845 0.97033 1.00110 0.90079 0.85165 0.94216 0.92772 0.91750 0.88057 0.88594 0.90904 0.85575 0.94077 0.91749 0.92734 0.87698 0.89593 0.89810 0.88005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.11 13.92 67.77 0.94 -4.17 16 2 C -0.15 -5.30 4.22 -16.50 -0.07 -5.37 16 3 C -0.11 -4.52 8.47 71.24 0.60 -3.92 16 4 C 0.14 3.58 3.43 30.35 0.10 3.69 16 5 H 0.13 2.40 7.94 -2.39 -0.02 2.38 16 6 O -0.39 -10.72 10.41 -148.98 -1.55 -12.27 16 7 C 0.04 0.77 7.63 72.48 0.55 1.32 16 8 C -0.14 -2.66 6.61 31.61 0.21 -2.45 16 9 C -0.12 -2.91 3.53 -10.52 -0.04 -2.95 16 10 H 0.14 2.78 8.14 -2.39 -0.02 2.76 16 11 C 0.47 16.86 4.04 71.23 0.29 17.14 16 12 O -0.54 -22.18 14.32 21.96 0.31 -21.87 16 13 O -0.34 -13.92 9.63 -51.43 -0.50 -14.41 16 14 C 0.11 4.91 4.71 71.98 0.34 5.25 16 15 C -0.04 -1.73 1.06 -52.93 -0.06 -1.78 16 16 C -0.47 -26.13 9.36 25.60 0.24 -25.89 16 17 H 0.04 2.45 8.06 -2.91 -0.02 2.43 16 18 C 0.03 1.78 5.47 84.65 0.46 2.24 16 19 N -0.94 -57.93 13.96 21.45 0.30 -57.63 16 20 Si 0.92 44.75 25.10 68.60 1.72 46.47 16 21 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 22 H -0.30 -14.91 7.11 99.48 0.71 -14.20 16 23 H -0.25 -11.38 5.54 99.48 0.55 -10.83 16 24 C -0.15 -5.60 9.96 30.62 0.30 -5.30 16 25 C -0.18 -7.17 7.76 30.62 0.24 -6.94 16 26 H 0.08 3.28 8.05 -2.91 -0.02 3.25 16 27 H 0.13 3.45 7.94 -2.91 -0.02 3.42 16 28 H 0.04 1.85 5.05 -2.39 -0.01 1.84 16 29 H 0.05 2.19 8.10 -2.39 -0.02 2.17 16 30 H 0.06 2.55 7.27 -2.39 -0.02 2.53 16 31 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.07 1.74 6.84 -2.38 -0.02 1.73 16 34 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.04 1.99 5.25 -2.39 -0.01 1.98 16 36 H 0.06 2.47 8.08 -2.39 -0.02 2.45 16 37 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 38 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 39 H 0.09 3.28 8.14 -2.38 -0.02 3.26 16 40 H 0.08 3.45 7.55 -2.39 -0.02 3.43 16 41 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 Total: -1.00 -71.24 328.78 5.27 -65.97 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: 0.85 Total: 22.86 kcal Atomic # 6 Polarization: -33.24 SS G_CDS: 4.12 Total: -29.11 kcal Atomic # 7 Polarization: -57.93 SS G_CDS: 0.30 Total: -57.63 kcal Atomic # 8 Polarization: -46.82 SS G_CDS: -1.73 Total: -48.56 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.72 Total: 46.47 kcal Total: -71.24 5.27 -65.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923157784.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.257 kcal (2) G-P(sol) polarization free energy of solvation -71.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds