Wall clock time and date at job start Tue Mar 31 2020 02:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48507 * 109.47309 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47163 * 299.99689 * 3 2 1 6 6 H 1.48504 * 109.47233 * 59.99617 * 3 2 1 7 7 C 1.37885 * 120.00273 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99816 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99908 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.46760 * 179.97438 * 9 7 2 11 11 C 1.34774 * 119.99544 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00472 * 0.02562 * 11 10 9 13 13 C 1.50706 * 120.00020 * 180.02562 * 11 10 9 14 14 N 1.46893 * 109.47176 * 180.02562 * 13 11 10 15 15 C 1.46903 * 110.99924 * 179.97438 * 14 13 11 16 16 C 1.52989 * 119.68124 * 25.52116 * 15 14 13 17 17 C 1.53008 * 60.74655 * 247.83156 * 16 15 14 18 18 H 1.08991 * 120.28864 * 112.14640 * 17 16 15 19 19 C 1.54555 * 117.99892 * 269.58239 * 17 16 15 20 20 O 1.44628 * 104.97464 * 86.66181 * 19 17 16 21 21 C 1.42896 * 105.46933 * 321.14501 * 20 19 17 22 22 C 1.52811 * 116.09901 * 168.38384 * 21 20 19 23 23 C 1.53968 * 86.79291 * 92.15936 * 22 21 20 24 24 C 1.52822 * 115.02034 * 269.18103 * 21 20 19 25 25 H 0.96996 * 120.00505 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.46805 * 59.99757 * 9 7 2 27 27 H 1.08992 * 109.46894 * 299.99907 * 9 7 2 28 28 H 0.96994 * 120.00700 * 0.02562 * 10 9 7 29 29 H 1.09001 * 109.46953 * 299.99667 * 13 11 10 30 30 H 1.09000 * 109.47318 * 59.99264 * 13 11 10 31 31 H 1.00904 * 110.99720 * 303.94906 * 14 13 11 32 32 H 1.09003 * 117.42228 * 355.53568 * 16 15 14 33 33 H 1.09001 * 117.42506 * 140.12588 * 16 15 14 34 34 H 1.08996 * 110.34282 * 205.53699 * 19 17 16 35 35 H 1.09002 * 110.33693 * 327.78723 * 19 17 16 36 36 H 1.09000 * 113.66117 * 206.62871 * 22 21 20 37 37 H 1.08996 * 113.65882 * 337.68275 * 22 21 20 38 38 H 1.08998 * 113.58173 * 270.11736 * 23 22 21 39 39 H 1.08995 * 113.58606 * 139.30271 * 23 22 21 40 40 H 1.09002 * 113.66232 * 21.33122 * 24 21 20 41 41 H 1.09006 * 113.66235 * 152.37662 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 1.7540 -4.8833 0.0000 12 8 0.5616 -5.1050 -0.0009 13 6 2.7333 -6.0288 0.0006 14 7 1.9989 -7.3009 -0.0008 15 6 2.9234 -8.4425 -0.0009 16 6 4.3319 -8.2768 0.5729 17 6 4.1588 -8.5035 -0.9303 18 1 4.3977 -7.7090 -1.6372 19 6 4.1662 -9.9590 -1.4501 20 8 2.7958 -10.4055 -1.3304 21 6 2.3201 -9.8509 -0.1024 22 6 0.8133 -9.9394 0.1362 23 6 1.0936 -11.2684 0.8613 24 6 2.5147 -10.7389 1.1261 25 1 -0.4851 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8896 27 1 0.6242 -2.5568 0.8902 28 1 3.1568 -3.4354 0.0009 29 1 3.3606 -5.9709 -0.8889 30 1 3.3594 -5.9711 0.8910 31 1 1.3616 -7.3513 0.7800 32 1 4.6267 -7.2795 0.8995 33 1 4.7343 -9.1009 1.1619 34 1 4.4843 -9.9876 -2.4923 35 1 4.8211 -10.5772 -0.8361 36 1 0.4273 -9.1574 0.7900 37 1 0.2317 -10.0543 -0.7784 38 1 1.0674 -12.1377 0.2042 39 1 0.5028 -11.4039 1.7672 40 1 3.2924 -11.4925 1.0024 41 1 2.6073 -10.1817 2.0584 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933392416.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:43 Heat of formation + Delta-G solvation = -17.991513 kcal Electronic energy + Delta-G solvation = -21969.156749 eV Core-core repulsion = 18658.020847 eV Total energy + Delta-G solvation = -3311.135902 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.47410 -38.87135 -37.04350 -35.84224 -34.21066 -32.66985 -32.31334 -28.40562 -27.24489 -26.26503 -25.73135 -24.72117 -22.40225 -21.82475 -20.26427 -19.65795 -19.17358 -17.66536 -16.52317 -16.29054 -15.83245 -15.46005 -15.33079 -15.08983 -14.67020 -14.49663 -14.34205 -13.78506 -13.46651 -13.17068 -12.89580 -12.56253 -12.52364 -12.29437 -11.97163 -11.65807 -11.44399 -11.17768 -10.99401 -10.95566 -10.92367 -10.86660 -10.80314 -10.34089 -10.28920 -9.59724 -9.40515 -9.08932 -8.76402 -8.28257 -7.90608 -6.18803 -4.25904 3.20211 3.21762 3.28656 3.31335 3.31981 3.51858 3.57758 4.10413 4.20440 4.27079 4.37351 4.44792 4.56291 4.75424 4.78036 4.81653 5.00676 5.17255 5.21700 5.24676 5.36209 5.38752 5.45101 5.48524 5.54470 5.56388 5.68054 5.71034 5.86002 5.93091 6.02334 6.07315 6.69396 6.80348 7.23723 7.29657 7.40536 7.49580 7.64324 7.94643 8.59045 8.75695 9.06669 9.40815 10.91436 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.036240 B = 0.003120 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.436747 B = 8972.716152 C = 9410.657380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.713 5.713 11 C 0.497 3.503 12 O -0.542 6.542 13 C 0.035 3.965 14 N -0.615 5.615 15 C 0.032 3.968 16 C -0.173 4.173 17 C -0.196 4.196 18 H 0.123 0.877 19 C 0.077 3.923 20 O -0.342 6.342 21 C 0.128 3.872 22 C -0.114 4.114 23 C -0.138 4.138 24 C -0.154 4.154 25 H 0.266 0.734 26 H 0.027 0.973 27 H 0.027 0.973 28 H 0.390 0.610 29 H 0.096 0.904 30 H 0.059 0.941 31 H 0.357 0.643 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.062 0.938 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.969 -20.994 2.019 23.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.130 3.870 10 N -0.362 5.362 11 C 0.281 3.719 12 O -0.420 6.420 13 C -0.097 4.097 14 N -0.247 5.247 15 C -0.062 4.062 16 C -0.213 4.213 17 C -0.215 4.215 18 H 0.141 0.859 19 C 0.001 3.999 20 O -0.260 6.260 21 C 0.087 3.913 22 C -0.152 4.152 23 C -0.176 4.176 24 C -0.192 4.192 25 H 0.075 0.925 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.222 0.778 29 H 0.114 0.886 30 H 0.077 0.923 31 H 0.180 0.820 32 H 0.125 0.875 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.080 0.920 36 H 0.116 0.884 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.654 -21.121 1.172 22.856 hybrid contribution 1.518 1.424 0.862 2.253 sum 10.172 -19.697 2.034 22.262 Atomic orbital electron populations 1.69980 1.06111 1.27234 1.48881 1.24960 0.94919 0.99481 0.94687 0.86359 0.79804 0.82949 0.77778 1.19645 1.20762 1.20789 1.21258 0.93276 0.90441 1.53214 0.91870 1.19107 0.88275 0.81880 0.97772 1.46431 1.11111 1.06033 1.72624 1.20249 0.89428 0.84196 0.78024 1.90674 1.16583 1.84661 1.50065 1.21970 0.96127 0.89226 1.02405 1.59824 1.16477 0.98247 1.50113 1.23195 0.85888 0.92685 1.04414 1.23682 0.99441 1.03739 0.94475 1.24398 1.04319 0.99210 0.93551 0.85948 1.22899 0.83886 0.91231 1.01897 1.88929 1.26181 1.72395 1.38531 1.21818 0.96422 0.87503 0.85526 1.22782 0.93375 0.97553 1.01478 1.22885 0.96173 0.97767 1.00740 1.23353 0.98406 0.99409 0.98002 0.92464 0.95478 0.95545 0.77797 0.88560 0.92279 0.82017 0.87476 0.88541 0.88423 0.91986 0.88433 0.90042 0.89879 0.91061 0.90915 0.89121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.05 13.29 55.43 0.74 -25.31 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.54 -14.69 9.28 -34.44 -0.32 -15.00 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 9 C 0.25 6.62 5.43 -5.19 -0.03 6.59 16 10 N -0.71 -14.79 5.55 -61.48 -0.34 -15.13 16 11 C 0.50 9.78 7.87 -10.98 -0.09 9.70 16 12 O -0.54 -12.97 16.20 5.56 0.09 -12.88 16 13 C 0.04 0.49 5.26 -4.98 -0.03 0.47 16 14 N -0.62 -8.63 5.89 -100.01 -0.59 -9.21 16 15 C 0.03 0.36 3.33 -130.41 -0.43 -0.07 16 16 C -0.17 -1.59 9.05 -26.73 -0.24 -1.83 16 17 C -0.20 -2.00 6.58 -88.89 -0.58 -2.58 16 18 H 0.12 1.26 7.49 -51.93 -0.39 0.87 16 19 C 0.08 0.74 7.45 37.97 0.28 1.02 16 20 O -0.34 -4.22 11.39 -35.23 -0.40 -4.62 16 21 C 0.13 1.42 1.06 -90.53 -0.10 1.32 16 22 C -0.11 -1.25 7.25 -26.32 -0.19 -1.44 16 23 C -0.14 -1.22 8.09 -25.74 -0.21 -1.43 16 24 C -0.15 -1.36 6.94 -26.33 -0.18 -1.54 16 25 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 26 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.39 6.85 8.32 -40.82 -0.34 6.51 16 29 H 0.10 1.25 7.12 -51.93 -0.37 0.88 16 30 H 0.06 0.70 6.51 -51.93 -0.34 0.36 16 31 H 0.36 5.06 7.30 -39.29 -0.29 4.77 16 32 H 0.11 0.94 6.23 -51.93 -0.32 0.62 16 33 H 0.10 0.76 7.78 -51.93 -0.40 0.36 16 34 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.10 1.06 6.90 -51.93 -0.36 0.70 16 37 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 333.05 15.07 5.02 5.02 Total: -1.00 -32.51 333.05 -8.87 -41.38 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -6.15 Total: 8.17 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -2.21 Total: -3.15 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: -0.19 Total: -49.66 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -0.31 Total: -17.50 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.51 -8.87 -41.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933392416.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.387 kcal (2) G-P(sol) polarization free energy of solvation -32.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds