Wall clock time and date at job start Tue Mar 31 2020 02:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48507 * 109.47309 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47163 * 299.99689 * 3 2 1 6 6 H 1.48504 * 109.47233 * 59.99617 * 3 2 1 7 7 C 1.37885 * 120.00273 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99816 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99908 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.46760 * 179.97438 * 9 7 2 11 11 C 1.34774 * 119.99544 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00472 * 0.02562 * 11 10 9 13 13 C 1.50706 * 120.00020 * 180.02562 * 11 10 9 14 14 N 1.46893 * 109.47176 * 180.02562 * 13 11 10 15 15 C 1.46903 * 110.99924 * 179.97438 * 14 13 11 16 16 C 1.52989 * 119.68124 * 25.52116 * 15 14 13 17 17 C 1.53008 * 60.74655 * 247.83156 * 16 15 14 18 18 H 1.08991 * 120.28864 * 112.14640 * 17 16 15 19 19 C 1.54555 * 117.99892 * 269.58239 * 17 16 15 20 20 O 1.44628 * 104.97464 * 86.66181 * 19 17 16 21 21 C 1.42896 * 105.46933 * 321.14501 * 20 19 17 22 22 C 1.52811 * 116.09901 * 168.38384 * 21 20 19 23 23 C 1.53968 * 86.79291 * 92.15936 * 22 21 20 24 24 C 1.52822 * 115.02034 * 269.18103 * 21 20 19 25 25 H 0.96996 * 120.00505 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.46805 * 59.99757 * 9 7 2 27 27 H 1.08992 * 109.46894 * 299.99907 * 9 7 2 28 28 H 0.96994 * 120.00700 * 0.02562 * 10 9 7 29 29 H 1.09001 * 109.46953 * 299.99667 * 13 11 10 30 30 H 1.09000 * 109.47318 * 59.99264 * 13 11 10 31 31 H 1.00904 * 110.99720 * 303.94906 * 14 13 11 32 32 H 1.09003 * 117.42228 * 355.53568 * 16 15 14 33 33 H 1.09001 * 117.42506 * 140.12588 * 16 15 14 34 34 H 1.08996 * 110.34282 * 205.53699 * 19 17 16 35 35 H 1.09002 * 110.33693 * 327.78723 * 19 17 16 36 36 H 1.09000 * 113.66117 * 206.62871 * 22 21 20 37 37 H 1.08996 * 113.65882 * 337.68275 * 22 21 20 38 38 H 1.08998 * 113.58173 * 270.11736 * 23 22 21 39 39 H 1.08995 * 113.58606 * 139.30271 * 23 22 21 40 40 H 1.09002 * 113.66232 * 21.33122 * 24 21 20 41 41 H 1.09006 * 113.66235 * 152.37662 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 1.7540 -4.8833 0.0000 12 8 0.5616 -5.1050 -0.0009 13 6 2.7333 -6.0288 0.0006 14 7 1.9989 -7.3009 -0.0008 15 6 2.9234 -8.4425 -0.0009 16 6 4.3319 -8.2768 0.5729 17 6 4.1588 -8.5035 -0.9303 18 1 4.3977 -7.7090 -1.6372 19 6 4.1662 -9.9590 -1.4501 20 8 2.7958 -10.4055 -1.3304 21 6 2.3201 -9.8509 -0.1024 22 6 0.8133 -9.9394 0.1362 23 6 1.0936 -11.2684 0.8613 24 6 2.5147 -10.7389 1.1261 25 1 -0.4851 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8896 27 1 0.6242 -2.5568 0.8902 28 1 3.1568 -3.4354 0.0009 29 1 3.3606 -5.9709 -0.8889 30 1 3.3594 -5.9711 0.8910 31 1 1.3616 -7.3513 0.7800 32 1 4.6267 -7.2795 0.8995 33 1 4.7343 -9.1009 1.1619 34 1 4.4843 -9.9876 -2.4923 35 1 4.8211 -10.5772 -0.8361 36 1 0.4273 -9.1574 0.7900 37 1 0.2317 -10.0543 -0.7784 38 1 1.0674 -12.1377 0.2042 39 1 0.5028 -11.4039 1.7672 40 1 3.2924 -11.4925 1.0024 41 1 2.6073 -10.1817 2.0584 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933392416.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:42 Heat of formation + Delta-G solvation = -42.698464 kcal Electronic energy + Delta-G solvation = -21970.228123 eV Core-core repulsion = 18658.020847 eV Total energy + Delta-G solvation = -3312.207275 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.28151 -40.49414 -37.89014 -36.78329 -36.11890 -34.37129 -33.64625 -29.99539 -28.41778 -27.32127 -26.56959 -25.77663 -24.28503 -22.56914 -21.55163 -20.89828 -20.00237 -19.14836 -18.03487 -17.33514 -16.98586 -16.93864 -16.59398 -16.39470 -16.10445 -15.39719 -15.32768 -15.20738 -14.72078 -14.27313 -14.04528 -13.94604 -13.88419 -13.48905 -13.25770 -13.09133 -12.89787 -12.75512 -12.23408 -12.20708 -11.96926 -11.71923 -11.64774 -11.62708 -11.46868 -11.07245 -10.82911 -10.77989 -10.36481 -9.85560 -9.22926 -8.30308 -6.47057 1.42770 1.43873 1.57286 1.72624 2.20421 2.41290 2.43665 2.80643 3.03246 3.04775 3.33757 3.49377 3.66713 3.80838 3.87142 4.00847 4.03481 4.08136 4.21059 4.26635 4.34955 4.53007 4.70258 4.76765 4.79073 4.82349 4.94525 5.03388 5.07264 5.09623 5.14374 5.22596 5.26728 5.33492 5.46828 5.64961 5.81729 5.84682 5.95740 6.20316 6.64229 6.89414 7.22363 7.47320 8.82155 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.036240 B = 0.003120 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.436747 B = 8972.716152 C = 9410.657380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.985 3.015 4 H -0.252 1.252 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.555 4.555 8 H 0.085 0.915 9 C 0.267 3.733 10 N -0.707 5.707 11 C 0.494 3.506 12 O -0.590 6.590 13 C 0.054 3.946 14 N -0.637 5.637 15 C 0.011 3.989 16 C -0.150 4.150 17 C -0.198 4.198 18 H 0.121 0.879 19 C 0.073 3.927 20 O -0.368 6.368 21 C 0.121 3.879 22 C -0.127 4.127 23 C -0.131 4.131 24 C -0.141 4.141 25 H 0.269 0.731 26 H -0.015 1.015 27 H -0.012 1.012 28 H 0.409 0.591 29 H 0.115 0.885 30 H 0.093 0.907 31 H 0.352 0.648 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.106 0.894 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.060 0.940 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.313 -21.401 2.765 25.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.808 3.192 4 H -0.175 1.175 5 H -0.206 1.206 6 H -0.204 1.204 7 C -0.593 4.593 8 H 0.103 0.897 9 C 0.144 3.856 10 N -0.357 5.357 11 C 0.280 3.720 12 O -0.471 6.471 13 C -0.077 4.077 14 N -0.269 5.269 15 C -0.082 4.082 16 C -0.190 4.190 17 C -0.217 4.217 18 H 0.139 0.861 19 C -0.003 4.003 20 O -0.287 6.287 21 C 0.081 3.919 22 C -0.165 4.165 23 C -0.168 4.168 24 C -0.178 4.178 25 H 0.078 0.922 26 H 0.003 0.997 27 H 0.006 0.994 28 H 0.245 0.755 29 H 0.132 0.868 30 H 0.111 0.889 31 H 0.174 0.826 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.124 0.876 35 H 0.101 0.899 36 H 0.111 0.889 37 H 0.079 0.921 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 12.063 -21.565 1.915 24.784 hybrid contribution 0.412 1.480 0.585 1.644 sum 12.475 -20.086 2.500 23.776 Atomic orbital electron populations 1.70143 1.08315 1.28525 1.50014 1.26085 0.95775 1.03973 0.93870 0.85102 0.79132 0.77271 0.77650 1.17506 1.20569 1.20434 1.21652 0.94341 0.90508 1.52784 0.89696 1.18532 0.88699 0.84352 0.94033 1.46144 1.11221 1.05403 1.72952 1.21295 0.89825 0.84915 0.75924 1.90652 1.19278 1.85364 1.51822 1.21831 0.94384 0.86799 1.04708 1.59766 1.17659 0.98957 1.50485 1.23260 0.86331 0.91771 1.06830 1.23756 0.96574 1.04929 0.93741 1.24524 1.03249 0.99614 0.94305 0.86105 1.23093 0.83018 0.91133 1.03014 1.88900 1.27707 1.72791 1.39343 1.21944 0.96026 0.87881 0.86088 1.22831 0.93776 0.98959 1.00895 1.22852 0.96669 0.96437 1.00876 1.23301 0.98336 0.99002 0.97207 0.92249 0.99736 0.99357 0.75545 0.86751 0.88946 0.82604 0.86602 0.86662 0.87566 0.89949 0.88932 0.92141 0.89963 0.89758 0.89825 0.88002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.31 13.29 21.45 0.28 -56.02 16 2 C 0.00 0.14 5.46 84.66 0.46 0.60 16 3 Si 0.99 42.08 29.54 68.60 2.03 44.11 16 4 H -0.25 -9.85 7.11 99.48 0.71 -9.15 16 5 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 6 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.56 -30.03 9.28 25.60 0.24 -29.79 16 8 H 0.09 4.12 7.60 -2.91 -0.02 4.10 16 9 C 0.27 14.66 5.43 85.63 0.46 15.12 16 10 N -0.71 -29.38 5.55 -466.80 -2.59 -31.97 16 11 C 0.49 19.55 7.87 87.66 0.69 20.24 16 12 O -0.59 -29.45 16.20 -3.02 -0.05 -29.50 16 13 C 0.05 1.44 5.26 85.56 0.45 1.89 16 14 N -0.64 -17.40 5.89 -470.34 -2.77 -20.18 16 15 C 0.01 0.22 3.33 4.30 0.01 0.24 16 16 C -0.15 -2.21 9.05 30.59 0.28 -1.93 16 17 C -0.20 -3.52 6.58 -9.67 -0.06 -3.59 16 18 H 0.12 2.18 7.49 -2.39 -0.02 2.16 16 19 C 0.07 1.24 7.45 72.51 0.54 1.78 16 20 O -0.37 -8.69 11.39 -148.98 -1.70 -10.38 16 21 C 0.12 2.54 1.06 -10.74 -0.01 2.53 16 22 C -0.13 -2.82 7.25 30.86 0.22 -2.59 16 23 C -0.13 -2.17 8.09 31.24 0.25 -1.92 16 24 C -0.14 -2.15 6.94 30.86 0.21 -1.94 16 25 H 0.27 15.12 8.31 -92.71 -0.77 14.34 16 26 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 27 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 28 H 0.41 13.73 8.32 -92.71 -0.77 12.96 16 29 H 0.11 2.65 7.12 -2.39 -0.02 2.63 16 30 H 0.09 1.86 6.51 -2.39 -0.02 1.85 16 31 H 0.35 10.03 7.30 -89.69 -0.66 9.38 16 32 H 0.12 1.52 6.23 -2.39 -0.01 1.50 16 33 H 0.12 1.30 7.78 -2.39 -0.02 1.28 16 34 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.09 2.09 6.90 -2.39 -0.02 2.08 16 37 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 Total: -1.00 -73.59 333.05 -1.42 -75.01 By element: Atomic # 1 Polarization: 28.68 SS G_CDS: -0.37 Total: 28.31 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: 3.75 Total: 0.62 kcal Atomic # 7 Polarization: -103.09 SS G_CDS: -5.08 Total: -108.17 kcal Atomic # 8 Polarization: -38.14 SS G_CDS: -1.75 Total: -39.88 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -73.59 -1.42 -75.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933392416.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.309 kcal (2) G-P(sol) polarization free energy of solvation -73.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds