Wall clock time and date at job start Tue Mar 31 2020 02:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86799 * 120.00283 * 2 1 4 4 H 1.48502 * 109.46998 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46934 * 300.00131 * 3 2 1 6 6 H 1.48499 * 109.47059 * 59.99890 * 3 2 1 7 7 C 1.38952 * 119.99608 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99592 * 179.97438 * 7 2 1 9 9 N 1.37094 * 120.00021 * 359.97438 * 7 2 1 10 10 C 1.34779 * 120.00085 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99910 * 0.02562 * 10 9 7 12 12 C 1.50694 * 120.00441 * 180.02562 * 10 9 7 13 13 N 1.46491 * 109.47575 * 180.02562 * 12 10 9 14 14 C 1.34777 * 120.00337 * 179.97438 * 13 12 10 15 15 O 1.21277 * 119.99890 * 0.02562 * 14 13 12 16 16 C 1.50701 * 120.00266 * 179.97438 * 14 13 12 17 17 H 1.09002 * 112.94786 * 48.58631 * 16 14 13 18 18 C 1.53963 * 113.66632 * 277.17506 * 16 14 13 19 19 C 1.53227 * 86.25173 * 218.96238 * 18 16 14 20 20 H 1.09001 * 110.60589 * 274.82303 * 19 18 16 21 21 C 1.50508 * 115.71092 * 147.24225 * 19 18 16 22 22 C 1.51636 * 114.39241 * 290.08856 * 21 19 18 23 23 C 1.52594 * 111.07653 * 313.09278 * 22 21 19 24 24 C 1.52983 * 108.83670 * 63.69699 * 23 22 21 25 25 C 1.52534 * 87.67713 * 26.88655 * 19 18 16 26 26 H 1.08997 * 114.79766 * 218.36668 * 25 19 18 27 27 H 0.97002 * 119.99180 * 359.97438 * 1 2 3 28 28 H 0.97004 * 120.00079 * 0.02562 * 9 7 2 29 29 H 1.09003 * 109.47198 * 60.00199 * 12 10 9 30 30 H 1.09003 * 109.46966 * 300.00839 * 12 10 9 31 31 H 0.97005 * 120.00059 * 359.97438 * 13 12 10 32 32 H 1.08999 * 113.74839 * 333.30522 * 18 16 14 33 33 H 1.09003 * 113.74624 * 104.51958 * 18 16 14 34 34 H 1.09000 * 108.49740 * 168.82382 * 21 19 18 35 35 H 1.08997 * 108.50377 * 51.36285 * 21 19 18 36 36 H 1.09004 * 109.15579 * 73.50777 * 22 21 19 37 37 H 1.08999 * 109.15552 * 192.67885 * 22 21 19 38 38 H 1.09002 * 109.57766 * 183.50612 * 23 22 21 39 39 H 1.09000 * 109.57805 * 303.75745 * 23 22 21 40 40 H 1.08995 * 109.51255 * 56.25809 * 24 23 22 41 41 H 1.08998 * 109.51445 * 176.36486 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3462 -0.0006 5 1 1.8895 2.3964 -1.2126 6 1 1.8895 2.3964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9971 -3.5579 -0.0005 11 8 3.2101 -3.5580 -0.0001 12 6 1.2436 -4.8630 -0.0011 13 7 2.1955 -5.9765 -0.0004 14 6 1.7462 -7.2472 -0.0002 15 8 0.5538 -7.4687 -0.0011 16 6 2.7254 -8.3927 0.0000 17 1 3.5063 -8.2842 0.7527 18 6 3.2609 -8.7482 -1.3991 19 6 3.1632 -10.2113 -0.9544 20 1 4.0615 -10.5086 -0.4133 21 6 2.8270 -11.2016 -2.0368 22 6 1.4063 -11.1019 -2.5575 23 6 0.4056 -11.0157 -1.4088 24 6 0.6595 -9.7246 -0.6284 25 6 2.0534 -9.7823 0.0001 26 1 2.0659 -10.2811 0.9692 27 1 -0.4849 0.8401 0.0004 28 1 0.3533 -2.3906 -0.0005 29 1 0.6173 -4.9205 -0.8914 30 1 0.6165 -4.9208 0.8886 31 1 3.1492 -5.7993 0.0000 32 1 2.5791 -8.4890 -2.2090 33 1 4.2813 -8.4091 -1.5777 34 1 2.9822 -12.2072 -1.6459 35 1 3.5124 -11.0489 -2.8704 36 1 1.3149 -10.2113 -3.1793 37 1 1.1838 -11.9822 -3.1605 38 1 -0.6087 -11.0078 -1.8078 39 1 0.5318 -11.8743 -0.7493 40 1 0.6003 -8.8724 -1.3053 41 1 -0.0903 -9.6197 0.1557 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935962245.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:53 Heat of formation + Delta-G solvation = -68.362269 kcal Electronic energy + Delta-G solvation = -21910.059703 eV Core-core repulsion = 18596.739562 eV Total energy + Delta-G solvation = -3313.320142 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.22860 -38.85005 -37.83030 -34.49156 -34.36776 -33.65124 -31.38751 -31.09280 -28.39739 -26.45283 -25.15731 -24.25512 -22.71719 -21.62213 -19.87266 -19.44912 -18.14318 -17.89697 -17.05116 -16.13148 -15.67863 -15.36455 -15.28292 -14.66807 -14.54646 -14.50557 -14.05112 -13.84194 -13.52388 -13.30516 -12.67899 -12.37228 -12.23911 -12.09537 -11.91752 -11.70049 -11.64473 -11.52582 -11.15484 -10.98169 -10.64990 -10.50124 -10.41659 -10.32932 -10.06708 -9.84549 -9.65525 -9.09918 -8.69312 -8.63574 -8.10915 -6.52448 -3.94401 2.83732 3.09578 3.21512 3.27718 3.44756 3.73458 4.10950 4.28412 4.39743 4.57352 4.61136 4.88132 4.90609 5.01192 5.08474 5.16220 5.24570 5.32757 5.46262 5.53197 5.57612 5.63865 5.72438 5.76328 5.88131 5.91926 5.96777 5.97943 6.04807 6.07926 6.11050 6.15081 6.35892 6.50585 6.62898 6.77563 7.45355 7.86965 7.91694 8.43841 8.51976 9.03916 9.38643 9.86536 10.64550 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.042878 B = 0.003023 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.866099 B = 9258.667629 C = 9541.249498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.025 3.975 3 Si 0.932 3.068 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.305 4.305 8 H 0.106 0.894 9 N -0.550 5.550 10 C 0.428 3.572 11 O -0.597 6.597 12 C 0.108 3.892 13 N -0.707 5.707 14 C 0.519 3.481 15 O -0.542 6.542 16 C -0.138 4.138 17 H 0.111 0.889 18 C -0.120 4.120 19 C -0.101 4.101 20 H 0.083 0.917 21 C -0.103 4.103 22 C -0.117 4.117 23 C -0.124 4.124 24 C -0.091 4.091 25 C -0.074 4.074 26 H 0.077 0.923 27 H 0.274 0.726 28 H 0.396 0.604 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.410 0.590 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.056 0.944 40 H 0.081 0.919 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.881 -19.808 -2.400 20.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.178 4.178 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.434 4.434 8 H 0.124 0.876 9 N -0.185 5.185 10 C 0.214 3.786 11 O -0.484 6.484 12 C -0.019 4.019 13 N -0.360 5.360 14 C 0.305 3.695 15 O -0.420 6.420 16 C -0.160 4.160 17 H 0.129 0.871 18 C -0.157 4.157 19 C -0.119 4.119 20 H 0.101 0.899 21 C -0.140 4.140 22 C -0.154 4.154 23 C -0.162 4.162 24 C -0.128 4.128 25 C -0.093 4.093 26 H 0.096 0.904 27 H 0.084 0.916 28 H 0.229 0.771 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.248 0.752 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.099 0.901 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.705 -19.749 -2.402 20.077 hybrid contribution 0.287 1.118 0.103 1.159 sum 2.992 -18.630 -2.299 19.009 Atomic orbital electron populations 1.69629 1.06018 1.28413 1.49438 1.25331 0.95670 0.99944 0.96813 0.85758 0.79685 0.80815 0.77836 1.19126 1.20605 1.20602 1.19781 0.93482 0.82011 1.48126 0.87640 1.41811 1.09478 1.04506 1.62663 1.19778 0.88306 0.85038 0.85508 1.90496 1.13735 1.86855 1.57328 1.20933 0.91995 0.85935 1.03075 1.45821 1.11487 1.04753 1.73960 1.20432 0.89509 0.83493 0.76048 1.90686 1.16889 1.84316 1.50154 1.22971 0.98762 0.93853 1.00383 0.87112 1.22899 1.01555 0.96049 0.95247 1.21596 0.98765 0.94530 0.97017 0.89875 1.20515 0.96924 0.98731 0.97870 1.21145 0.94719 1.01519 0.98039 1.21541 0.98462 0.98837 0.97368 1.21570 0.94435 0.96696 1.00137 1.22185 0.95165 0.93206 0.98749 0.90432 0.91642 0.77052 0.90010 0.89962 0.75249 0.89545 0.90685 0.92492 0.92068 0.92292 0.92432 0.92232 0.92517 0.90061 0.91192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.93 13.05 55.50 0.72 -23.20 16 2 C 0.03 0.66 5.50 -17.46 -0.10 0.56 16 3 Si 0.93 20.53 29.55 -169.99 -5.02 15.51 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 8 H 0.11 3.00 7.16 -52.48 -0.38 2.62 16 9 N -0.55 -13.67 5.29 -10.96 -0.06 -13.73 16 10 C 0.43 9.83 7.85 -10.99 -0.09 9.75 16 11 O -0.60 -15.31 15.24 5.54 0.08 -15.23 16 12 C 0.11 2.00 6.15 -5.20 -0.03 1.97 16 13 N -0.71 -11.67 5.53 -61.48 -0.34 -12.01 16 14 C 0.52 7.91 6.95 -10.98 -0.08 7.83 16 15 O -0.54 -9.52 12.60 5.56 0.07 -9.45 16 16 C -0.14 -1.59 4.09 -90.61 -0.37 -1.96 16 17 H 0.11 1.11 8.14 -51.93 -0.42 0.68 16 18 C -0.12 -1.22 6.83 -26.11 -0.18 -1.40 16 19 C -0.10 -0.91 3.63 -92.04 -0.33 -1.24 16 20 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 21 C -0.10 -0.86 5.51 -28.67 -0.16 -1.01 16 22 C -0.12 -1.05 5.75 -27.63 -0.16 -1.21 16 23 C -0.12 -1.23 5.90 -26.95 -0.16 -1.39 16 24 C -0.09 -1.10 3.66 -26.73 -0.10 -1.20 16 25 C -0.07 -0.80 4.21 -90.14 -0.38 -1.17 16 26 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 28 H 0.40 9.47 7.90 -40.82 -0.32 9.15 16 29 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 30 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 31 H 0.41 6.71 7.44 -40.82 -0.30 6.41 16 32 H 0.09 0.98 7.37 -51.93 -0.38 0.59 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.57 7.94 -51.93 -0.41 0.16 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 1.16 5.30 -51.93 -0.28 0.88 16 41 H 0.07 0.95 7.60 -51.93 -0.39 0.55 16 LS Contribution 326.86 15.07 4.93 4.93 Total: -1.00 -29.89 326.86 -8.14 -38.03 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: -6.25 Total: 14.06 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: -2.27 Total: 1.08 kcal Atomic # 7 Polarization: -49.26 SS G_CDS: 0.33 Total: -48.94 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: 0.15 Total: -24.68 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.89 -8.14 -38.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935962245.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.328 kcal (2) G-P(sol) polarization free energy of solvation -29.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds