Wall clock time and date at job start Tue Mar 31 2020 02:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86799 * 120.00283 * 2 1 4 4 H 1.48502 * 109.46998 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46934 * 300.00131 * 3 2 1 6 6 H 1.48499 * 109.47059 * 59.99890 * 3 2 1 7 7 C 1.38952 * 119.99608 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99592 * 179.97438 * 7 2 1 9 9 N 1.37094 * 120.00021 * 359.97438 * 7 2 1 10 10 C 1.34779 * 120.00085 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99910 * 0.02562 * 10 9 7 12 12 C 1.50694 * 120.00441 * 180.02562 * 10 9 7 13 13 N 1.46491 * 109.47575 * 180.02562 * 12 10 9 14 14 C 1.34777 * 120.00337 * 179.97438 * 13 12 10 15 15 O 1.21277 * 119.99890 * 0.02562 * 14 13 12 16 16 C 1.50701 * 120.00266 * 179.97438 * 14 13 12 17 17 H 1.09002 * 112.94786 * 48.58631 * 16 14 13 18 18 C 1.53963 * 113.66632 * 277.17506 * 16 14 13 19 19 C 1.53227 * 86.25173 * 218.96238 * 18 16 14 20 20 H 1.09001 * 110.60589 * 274.82303 * 19 18 16 21 21 C 1.50508 * 115.71092 * 147.24225 * 19 18 16 22 22 C 1.51636 * 114.39241 * 290.08856 * 21 19 18 23 23 C 1.52594 * 111.07653 * 313.09278 * 22 21 19 24 24 C 1.52983 * 108.83670 * 63.69699 * 23 22 21 25 25 C 1.52534 * 87.67713 * 26.88655 * 19 18 16 26 26 H 1.08997 * 114.79766 * 218.36668 * 25 19 18 27 27 H 0.97002 * 119.99180 * 359.97438 * 1 2 3 28 28 H 0.97004 * 120.00079 * 0.02562 * 9 7 2 29 29 H 1.09003 * 109.47198 * 60.00199 * 12 10 9 30 30 H 1.09003 * 109.46966 * 300.00839 * 12 10 9 31 31 H 0.97005 * 120.00059 * 359.97438 * 13 12 10 32 32 H 1.08999 * 113.74839 * 333.30522 * 18 16 14 33 33 H 1.09003 * 113.74624 * 104.51958 * 18 16 14 34 34 H 1.09000 * 108.49740 * 168.82382 * 21 19 18 35 35 H 1.08997 * 108.50377 * 51.36285 * 21 19 18 36 36 H 1.09004 * 109.15579 * 73.50777 * 22 21 19 37 37 H 1.08999 * 109.15552 * 192.67885 * 22 21 19 38 38 H 1.09002 * 109.57766 * 183.50612 * 23 22 21 39 39 H 1.09000 * 109.57805 * 303.75745 * 23 22 21 40 40 H 1.08995 * 109.51255 * 56.25809 * 24 23 22 41 41 H 1.08998 * 109.51445 * 176.36486 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3462 -0.0006 5 1 1.8895 2.3964 -1.2126 6 1 1.8895 2.3964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9971 -3.5579 -0.0005 11 8 3.2101 -3.5580 -0.0001 12 6 1.2436 -4.8630 -0.0011 13 7 2.1955 -5.9765 -0.0004 14 6 1.7462 -7.2472 -0.0002 15 8 0.5538 -7.4687 -0.0011 16 6 2.7254 -8.3927 0.0000 17 1 3.5063 -8.2842 0.7527 18 6 3.2609 -8.7482 -1.3991 19 6 3.1632 -10.2113 -0.9544 20 1 4.0615 -10.5086 -0.4133 21 6 2.8270 -11.2016 -2.0368 22 6 1.4063 -11.1019 -2.5575 23 6 0.4056 -11.0157 -1.4088 24 6 0.6595 -9.7246 -0.6284 25 6 2.0534 -9.7823 0.0001 26 1 2.0659 -10.2811 0.9692 27 1 -0.4849 0.8401 0.0004 28 1 0.3533 -2.3906 -0.0005 29 1 0.6173 -4.9205 -0.8914 30 1 0.6165 -4.9208 0.8886 31 1 3.1492 -5.7993 0.0000 32 1 2.5791 -8.4890 -2.2090 33 1 4.2813 -8.4091 -1.5777 34 1 2.9822 -12.2072 -1.6459 35 1 3.5124 -11.0489 -2.8704 36 1 1.3149 -10.2113 -3.1793 37 1 1.1838 -11.9822 -3.1605 38 1 -0.6087 -11.0078 -1.8078 39 1 0.5318 -11.8743 -0.7493 40 1 0.6003 -8.8724 -1.3053 41 1 -0.0903 -9.6197 0.1557 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935962245.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:53 Heat of formation + Delta-G solvation = -87.722977 kcal Electronic energy + Delta-G solvation = -21910.899247 eV Core-core repulsion = 18596.739562 eV Total energy + Delta-G solvation = -3314.159685 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.19088 -40.45562 -39.26398 -36.25957 -35.38170 -35.09391 -33.38926 -31.89983 -29.83714 -27.60058 -26.47685 -25.60350 -23.60738 -22.56203 -21.38492 -20.91918 -20.05000 -18.81283 -18.28990 -17.30634 -17.15271 -16.84504 -16.58597 -16.27956 -15.77820 -15.66381 -15.40639 -14.98988 -14.95603 -14.36639 -13.97295 -13.61458 -13.55768 -13.47018 -13.20299 -12.98527 -12.92149 -12.50698 -12.46350 -12.35278 -12.11980 -11.77998 -11.59598 -11.51950 -11.30443 -10.84707 -10.68713 -10.57658 -10.26119 -10.12650 -10.00908 -8.52820 -6.03169 1.33904 1.41917 1.56132 1.62923 1.89314 2.08836 2.32913 3.12136 3.14300 3.42962 3.61031 3.72760 3.76886 4.04006 4.20677 4.23815 4.30358 4.33815 4.41551 4.45594 4.52765 4.63911 4.75093 4.82112 4.86115 4.96502 5.00974 5.14595 5.20875 5.27425 5.31193 5.36223 5.37301 5.41797 5.58442 5.65300 5.74200 5.90443 6.45066 6.59162 7.01845 7.24265 7.42858 7.92489 8.64393 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.042878 B = 0.003023 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.866099 B = 9258.667629 C = 9541.249498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.011 4.011 3 Si 0.998 3.002 4 H -0.269 1.269 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.337 4.337 8 H 0.086 0.914 9 N -0.560 5.560 10 C 0.432 3.568 11 O -0.624 6.624 12 C 0.122 3.878 13 N -0.709 5.709 14 C 0.517 3.483 15 O -0.568 6.568 16 C -0.139 4.139 17 H 0.132 0.868 18 C -0.119 4.119 19 C -0.088 4.088 20 H 0.105 0.895 21 C -0.104 4.104 22 C -0.116 4.116 23 C -0.121 4.121 24 C -0.088 4.088 25 C -0.077 4.077 26 H 0.088 0.912 27 H 0.280 0.720 28 H 0.398 0.602 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.412 0.588 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.045 0.955 37 H 0.071 0.929 38 H 0.055 0.945 39 H 0.068 0.932 40 H 0.054 0.946 41 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.995 -20.992 -2.462 21.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.212 4.212 3 Si 0.821 3.179 4 H -0.194 1.194 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.466 4.466 8 H 0.104 0.896 9 N -0.196 5.196 10 C 0.220 3.780 11 O -0.512 6.512 12 C -0.006 4.006 13 N -0.363 5.363 14 C 0.305 3.695 15 O -0.447 6.447 16 C -0.160 4.160 17 H 0.150 0.850 18 C -0.157 4.157 19 C -0.106 4.106 20 H 0.123 0.877 21 C -0.141 4.141 22 C -0.154 4.154 23 C -0.159 4.159 24 C -0.126 4.126 25 C -0.096 4.096 26 H 0.106 0.894 27 H 0.089 0.911 28 H 0.232 0.768 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.249 0.751 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.064 0.936 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.806 -20.957 -2.466 21.442 hybrid contribution -0.111 1.439 0.119 1.448 sum 3.695 -19.518 -2.347 20.003 Atomic orbital electron populations 1.69693 1.07042 1.29591 1.49362 1.26148 0.96544 1.02727 0.95755 0.84803 0.78140 0.76649 0.78337 1.19378 1.19603 1.19593 1.19780 0.92957 0.83553 1.50343 0.89583 1.41867 1.09566 1.04672 1.63457 1.20455 0.88144 0.85948 0.83495 1.90469 1.15154 1.87559 1.57992 1.20727 0.91885 0.84230 1.03803 1.45887 1.11141 1.04737 1.74555 1.21176 0.89909 0.83639 0.74748 1.90688 1.18363 1.84586 1.51104 1.23149 0.98485 0.92306 1.02041 0.84975 1.22911 1.01777 0.97209 0.93793 1.21585 0.98579 0.93767 0.96688 0.87689 1.20533 0.96348 0.99247 0.97978 1.21150 0.95113 1.01570 0.97562 1.21506 0.98734 0.97923 0.97710 1.21420 0.95054 0.96918 0.99172 1.22239 0.94732 0.92902 0.99719 0.89401 0.91058 0.76768 0.89255 0.89138 0.75054 0.91162 0.89264 0.90998 0.91124 0.93616 0.91002 0.92627 0.91349 0.92698 0.93472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.95 13.05 21.66 0.28 -48.67 16 2 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 3 Si 1.00 41.84 29.55 68.60 2.03 43.86 16 4 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 5 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 6 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 7 C -0.34 -18.68 9.68 84.04 0.81 -17.86 16 8 H 0.09 5.02 7.16 -2.91 -0.02 5.00 16 9 N -0.56 -28.40 5.29 -306.98 -1.62 -30.03 16 10 C 0.43 20.15 7.85 87.65 0.69 20.84 16 11 O -0.62 -32.40 15.24 -3.08 -0.05 -32.45 16 12 C 0.12 4.50 6.15 85.63 0.53 5.03 16 13 N -0.71 -23.27 5.53 -466.81 -2.58 -25.85 16 14 C 0.52 15.60 6.95 87.66 0.61 16.21 16 15 O -0.57 -20.21 12.60 -3.02 -0.04 -20.25 16 16 C -0.14 -2.98 4.09 -10.79 -0.04 -3.03 16 17 H 0.13 2.30 8.14 -2.39 -0.02 2.28 16 18 C -0.12 -2.22 6.83 31.00 0.21 -2.00 16 19 C -0.09 -1.33 3.63 -11.72 -0.04 -1.37 16 20 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 21 C -0.10 -1.42 5.51 29.34 0.16 -1.26 16 22 C -0.12 -1.89 5.75 30.01 0.17 -1.72 16 23 C -0.12 -2.28 5.90 30.45 0.18 -2.10 16 24 C -0.09 -2.12 3.66 30.59 0.11 -2.01 16 25 C -0.08 -1.52 4.21 -10.48 -0.04 -1.57 16 26 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 28 H 0.40 19.46 7.90 -92.71 -0.73 18.72 16 29 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 30 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 31 H 0.41 13.33 7.44 -92.70 -0.69 12.64 16 32 H 0.07 1.55 7.37 -2.39 -0.02 1.53 16 33 H 0.09 1.41 8.14 -2.39 -0.02 1.40 16 34 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.04 0.85 7.94 -2.38 -0.02 0.84 16 37 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.05 1.61 5.30 -2.39 -0.01 1.60 16 41 H 0.05 1.31 7.60 -2.39 -0.02 1.30 16 Total: -1.00 -64.44 326.86 1.46 -62.98 By element: Atomic # 1 Polarization: 41.72 SS G_CDS: -0.37 Total: 41.35 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: 3.81 Total: 9.05 kcal Atomic # 7 Polarization: -100.62 SS G_CDS: -3.92 Total: -104.54 kcal Atomic # 8 Polarization: -52.61 SS G_CDS: -0.09 Total: -52.70 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.86 kcal Total: -64.44 1.46 -62.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935962245.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.744 kcal (2) G-P(sol) polarization free energy of solvation -64.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds