Wall clock time and date at job start Tue Mar 31 2020 02:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 120.00533 * 2 1 4 4 H 1.48498 * 109.47049 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47145 * 300.00291 * 3 2 1 6 6 H 1.48507 * 109.46597 * 60.00064 * 3 2 1 7 7 C 1.38811 * 119.99782 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00468 * 180.02562 * 7 2 1 9 9 N 1.36947 * 120.00009 * 0.02562 * 7 2 1 10 10 C 1.47427 * 125.64506 * 359.95849 * 9 7 2 11 11 C 1.54908 * 104.82996 * 204.16353 * 10 9 7 12 12 H 1.08998 * 111.00282 * 204.91449 * 11 10 9 13 13 O 1.42903 * 111.00337 * 81.06677 * 11 10 9 14 14 C 1.55153 * 101.58361 * 322.99174 * 11 10 9 15 15 H 1.09000 * 110.87358 * 277.06724 * 14 11 10 16 16 C 1.52997 * 110.72064 * 153.86366 * 14 11 10 17 17 N 1.46506 * 109.47289 * 180.02562 * 16 14 11 18 18 C 1.34774 * 120.00072 * 180.02562 * 17 16 14 19 19 O 1.21284 * 120.00066 * 0.02562 * 18 17 16 20 20 C 1.50696 * 119.99838 * 180.02562 * 18 17 16 21 21 C 1.54641 * 111.03761 * 295.33304 * 20 18 17 22 22 C 1.51167 * 104.69501 * 217.36382 * 21 20 18 23 23 C 1.30524 * 111.12002 * 16.38122 * 22 21 20 24 24 C 1.51104 * 111.10416 * 0.03228 * 23 22 21 25 25 C 1.47023 * 125.64981 * 180.02562 * 9 7 2 26 26 H 0.97008 * 119.99482 * 0.02562 * 1 2 3 27 27 H 1.09004 * 110.36755 * 322.99920 * 10 9 7 28 28 H 1.08997 * 110.36523 * 85.21287 * 10 9 7 29 29 H 0.96702 * 114.00324 * 67.80096 * 13 11 10 30 30 H 1.09001 * 109.47289 * 60.02230 * 16 14 11 31 31 H 1.09004 * 109.47261 * 300.02486 * 16 14 11 32 32 H 0.97001 * 119.99251 * 0.02562 * 17 16 14 33 33 H 1.09003 * 110.91595 * 59.29617 * 20 18 17 34 34 H 1.09000 * 110.38202 * 336.14661 * 21 20 18 35 35 H 1.09000 * 110.38743 * 98.52255 * 21 20 18 36 36 H 1.07995 * 124.43111 * 196.42887 * 22 21 20 37 37 H 1.07995 * 124.45037 * 180.02562 * 23 22 21 38 38 H 1.09004 * 110.38408 * 224.75148 * 24 23 22 39 39 H 1.08997 * 110.38907 * 102.37954 * 24 23 22 40 40 H 1.08998 * 109.88436 * 59.48492 * 25 9 7 41 41 H 1.08999 * 110.00482 * 298.39173 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0016 10 6 -0.1417 -2.5331 -0.0014 11 6 -0.4018 -3.9324 0.6102 12 1 -1.3593 -4.3326 0.2768 13 8 -0.3365 -3.8879 2.0370 14 6 0.7780 -4.7524 0.0248 15 1 0.5474 -5.1001 -0.9822 16 6 1.1229 -5.9315 0.9368 17 7 2.2386 -6.6854 0.3595 18 6 2.7162 -7.7742 0.9943 19 8 2.2220 -8.1301 2.0431 20 6 3.8642 -8.5493 0.4008 21 6 3.4618 -9.1928 -0.9466 22 6 4.1567 -10.5353 -0.9530 23 6 4.5538 -10.8651 0.2458 24 6 4.1897 -9.7984 1.2522 25 6 1.9315 -3.7276 -0.0017 26 1 -0.4850 0.8402 -0.0004 27 1 -0.5994 -1.7589 0.6145 28 1 -0.5278 -2.4845 -1.0195 29 1 -1.0536 -3.3860 2.4482 30 1 0.2545 -6.5834 1.0319 31 1 1.4068 -5.5588 1.9209 32 1 2.6335 -6.4009 -0.4795 33 1 4.7430 -7.9151 0.2845 34 1 2.3810 -9.3246 -0.9966 35 1 3.8095 -8.5805 -1.7786 36 1 4.3056 -11.1416 -1.8342 37 1 5.0742 -11.7802 0.4869 38 1 5.0320 -9.5977 1.9143 39 1 3.3164 -10.1028 1.8291 40 1 2.5579 -3.8512 0.8817 41 1 2.5297 -3.8661 -0.9024 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957944486.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:05 Heat of formation + Delta-G solvation = -43.757583 kcal Electronic energy + Delta-G solvation = -22067.865953 eV Core-core repulsion = 18755.612751 eV Total energy + Delta-G solvation = -3312.253202 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.22673 -38.48695 -37.51171 -34.86922 -34.50627 -32.20952 -30.35965 -29.16758 -28.34284 -27.62810 -25.49323 -23.74780 -22.10892 -20.51893 -19.88170 -19.40029 -18.97764 -17.38148 -17.27119 -16.49520 -16.27186 -15.55101 -14.94975 -14.87506 -14.36127 -14.08737 -13.78667 -13.33313 -13.01299 -12.70077 -12.47934 -12.37997 -12.34029 -11.97178 -11.85772 -11.48175 -11.36896 -11.30437 -11.24927 -10.82772 -10.64713 -10.36714 -10.19838 -9.99868 -9.85174 -9.63264 -9.12395 -9.10406 -8.87256 -8.69695 -6.85534 -5.70344 -3.10343 2.02258 2.70612 3.27780 3.37606 3.43371 3.45657 4.27993 4.40239 4.45681 4.71633 4.78968 4.99274 5.05922 5.16418 5.31342 5.37378 5.41791 5.43956 5.50714 5.55733 5.61407 5.67134 5.77411 5.90501 5.99041 6.07135 6.12168 6.27444 6.35379 6.43479 6.53277 6.63611 6.66219 6.85320 7.27223 7.56837 7.61243 7.74288 8.22679 8.31324 8.36995 9.17372 9.78823 10.42724 11.34583 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.028268 B = 0.003526 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.285597 B = 7940.211457 C = 8436.958424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.013 4.013 3 Si 0.915 3.085 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.218 4.218 8 H 0.078 0.922 9 N -0.598 5.598 10 C 0.126 3.874 11 C 0.082 3.918 12 H 0.054 0.946 13 O -0.557 6.557 14 C -0.106 4.106 15 H 0.085 0.915 16 C 0.139 3.861 17 N -0.725 5.725 18 C 0.520 3.480 19 O -0.543 6.543 20 C -0.118 4.118 21 C -0.090 4.090 22 C -0.171 4.171 23 C -0.162 4.162 24 C -0.088 4.088 25 C 0.145 3.855 26 H 0.251 0.749 27 H 0.112 0.888 28 H 0.019 0.981 29 H 0.375 0.625 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.400 0.600 33 H 0.106 0.894 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.028 0.972 41 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.237 -17.571 -2.377 18.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.208 4.208 3 Si 0.746 3.254 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.346 4.346 8 H 0.096 0.904 9 N -0.324 5.324 10 C 0.001 3.999 11 C 0.022 3.978 12 H 0.072 0.928 13 O -0.363 6.363 14 C -0.125 4.125 15 H 0.103 0.897 16 C 0.016 3.984 17 N -0.375 5.375 18 C 0.306 3.694 19 O -0.420 6.420 20 C -0.139 4.139 21 C -0.127 4.127 22 C -0.189 4.189 23 C -0.179 4.179 24 C -0.125 4.125 25 C 0.019 3.981 26 H 0.062 0.938 27 H 0.129 0.871 28 H 0.037 0.963 29 H 0.222 0.778 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.234 0.766 33 H 0.124 0.876 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.093 0.907 39 H 0.112 0.888 40 H 0.046 0.954 41 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 4.379 -17.931 -1.722 18.538 hybrid contribution 0.171 1.363 -0.542 1.477 sum 4.550 -16.568 -2.264 17.330 Atomic orbital electron populations 1.69760 1.04919 1.24653 1.58116 1.24767 0.95759 0.97736 1.02520 0.85977 0.78667 0.83507 0.77229 1.20529 1.21784 1.21728 1.19139 0.90554 0.82420 1.42515 0.90425 1.44355 1.01545 0.99778 1.86676 1.22588 0.85730 0.93002 0.98619 1.23188 0.95144 0.98114 0.81402 0.92813 1.86395 1.54327 1.76637 1.18910 1.22501 0.97391 0.94414 0.98235 0.89679 1.21238 0.88092 0.91353 0.97722 1.46120 1.36363 1.28575 1.26483 1.20314 0.83939 0.80542 0.84626 1.90687 1.60150 1.68269 1.22895 1.22196 0.97620 0.97351 0.96763 1.21337 1.00840 0.94618 0.95925 1.23218 0.99914 0.97734 0.98050 1.23332 1.00001 0.99481 0.95130 1.21283 1.02572 0.91473 0.97169 1.21299 0.93382 0.85645 0.97787 0.93803 0.87073 0.96306 0.77826 0.91932 0.90159 0.76602 0.87580 0.90230 0.90263 0.85649 0.85662 0.90728 0.88773 0.95415 0.96361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.47 10.09 55.49 0.56 -25.91 16 2 C -0.01 -0.36 5.49 -17.43 -0.10 -0.45 16 3 Si 0.92 21.98 29.55 -169.99 -5.02 16.95 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.22 -6.05 10.27 -15.05 -0.15 -6.21 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.60 -15.11 3.40 -170.07 -0.58 -15.68 16 10 C 0.13 2.94 5.62 -2.53 -0.01 2.93 16 11 C 0.08 1.51 4.17 -24.59 -0.10 1.41 16 12 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 13 O -0.56 -10.37 12.22 -35.23 -0.43 -10.80 16 14 C -0.11 -1.79 2.95 -88.79 -0.26 -2.05 16 15 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 16 C 0.14 2.20 4.59 -4.04 -0.02 2.19 16 17 N -0.72 -9.63 5.39 -60.29 -0.32 -9.95 16 18 C 0.52 7.25 7.06 -10.99 -0.08 7.17 16 19 O -0.54 -9.69 15.54 5.55 0.09 -9.61 16 20 C -0.12 -1.23 3.54 -90.05 -0.32 -1.55 16 21 C -0.09 -0.79 6.37 -26.79 -0.17 -0.96 16 22 C -0.17 -1.42 10.78 -35.66 -0.38 -1.80 16 23 C -0.16 -1.40 10.78 -35.70 -0.38 -1.78 16 24 C -0.09 -0.91 6.16 -26.83 -0.17 -1.07 16 25 C 0.14 2.96 6.52 -3.06 -0.02 2.94 16 26 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 27 H 0.11 2.91 5.87 -51.93 -0.30 2.61 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.37 5.70 9.12 45.56 0.42 6.11 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.08 1.51 7.44 -51.93 -0.39 1.12 16 32 H 0.40 4.42 8.33 -40.82 -0.34 4.08 16 33 H 0.11 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.08 0.75 7.88 -51.93 -0.41 0.34 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.09 1.16 7.01 -51.93 -0.36 0.79 16 40 H 0.03 0.60 7.76 -51.93 -0.40 0.20 16 41 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 332.59 15.07 5.01 5.01 Total: -1.00 -32.92 332.59 -8.43 -41.35 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -5.57 Total: 7.86 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -2.17 Total: 0.77 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: -0.34 Total: -51.54 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.34 Total: -20.40 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.92 -8.43 -41.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957944486.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.408 kcal (2) G-P(sol) polarization free energy of solvation -32.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds