Wall clock time and date at job start Tue Mar 31 2020 02:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 120.00533 * 2 1 4 4 H 1.48498 * 109.47049 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47145 * 300.00291 * 3 2 1 6 6 H 1.48507 * 109.46597 * 60.00064 * 3 2 1 7 7 C 1.38811 * 119.99782 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00468 * 180.02562 * 7 2 1 9 9 N 1.36947 * 120.00009 * 0.02562 * 7 2 1 10 10 C 1.47427 * 125.64506 * 359.95849 * 9 7 2 11 11 C 1.54908 * 104.82996 * 204.16353 * 10 9 7 12 12 H 1.08998 * 111.00282 * 204.91449 * 11 10 9 13 13 O 1.42903 * 111.00337 * 81.06677 * 11 10 9 14 14 C 1.55153 * 101.58361 * 322.99174 * 11 10 9 15 15 H 1.09000 * 110.87358 * 277.06724 * 14 11 10 16 16 C 1.52997 * 110.72064 * 153.86366 * 14 11 10 17 17 N 1.46506 * 109.47289 * 180.02562 * 16 14 11 18 18 C 1.34774 * 120.00072 * 180.02562 * 17 16 14 19 19 O 1.21284 * 120.00066 * 0.02562 * 18 17 16 20 20 C 1.50696 * 119.99838 * 180.02562 * 18 17 16 21 21 C 1.54641 * 111.03761 * 295.33304 * 20 18 17 22 22 C 1.51167 * 104.69501 * 217.36382 * 21 20 18 23 23 C 1.30524 * 111.12002 * 16.38122 * 22 21 20 24 24 C 1.51104 * 111.10416 * 0.03228 * 23 22 21 25 25 C 1.47023 * 125.64981 * 180.02562 * 9 7 2 26 26 H 0.97008 * 119.99482 * 0.02562 * 1 2 3 27 27 H 1.09004 * 110.36755 * 322.99920 * 10 9 7 28 28 H 1.08997 * 110.36523 * 85.21287 * 10 9 7 29 29 H 0.96702 * 114.00324 * 67.80096 * 13 11 10 30 30 H 1.09001 * 109.47289 * 60.02230 * 16 14 11 31 31 H 1.09004 * 109.47261 * 300.02486 * 16 14 11 32 32 H 0.97001 * 119.99251 * 0.02562 * 17 16 14 33 33 H 1.09003 * 110.91595 * 59.29617 * 20 18 17 34 34 H 1.09000 * 110.38202 * 336.14661 * 21 20 18 35 35 H 1.09000 * 110.38743 * 98.52255 * 21 20 18 36 36 H 1.07995 * 124.43111 * 196.42887 * 22 21 20 37 37 H 1.07995 * 124.45037 * 180.02562 * 23 22 21 38 38 H 1.09004 * 110.38408 * 224.75148 * 24 23 22 39 39 H 1.08997 * 110.38907 * 102.37954 * 24 23 22 40 40 H 1.08998 * 109.88436 * 59.48492 * 25 9 7 41 41 H 1.08999 * 110.00482 * 298.39173 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0016 10 6 -0.1417 -2.5331 -0.0014 11 6 -0.4018 -3.9324 0.6102 12 1 -1.3593 -4.3326 0.2768 13 8 -0.3365 -3.8879 2.0370 14 6 0.7780 -4.7524 0.0248 15 1 0.5474 -5.1001 -0.9822 16 6 1.1229 -5.9315 0.9368 17 7 2.2386 -6.6854 0.3595 18 6 2.7162 -7.7742 0.9943 19 8 2.2220 -8.1301 2.0431 20 6 3.8642 -8.5493 0.4008 21 6 3.4618 -9.1928 -0.9466 22 6 4.1567 -10.5353 -0.9530 23 6 4.5538 -10.8651 0.2458 24 6 4.1897 -9.7984 1.2522 25 6 1.9315 -3.7276 -0.0017 26 1 -0.4850 0.8402 -0.0004 27 1 -0.5994 -1.7589 0.6145 28 1 -0.5278 -2.4845 -1.0195 29 1 -1.0536 -3.3860 2.4482 30 1 0.2545 -6.5834 1.0319 31 1 1.4068 -5.5588 1.9209 32 1 2.6335 -6.4009 -0.4795 33 1 4.7430 -7.9151 0.2845 34 1 2.3810 -9.3246 -0.9966 35 1 3.8095 -8.5805 -1.7786 36 1 4.3056 -11.1416 -1.8342 37 1 5.0742 -11.7802 0.4869 38 1 5.0320 -9.5977 1.9143 39 1 3.3164 -10.1028 1.8291 40 1 2.5579 -3.8512 0.8817 41 1 2.5297 -3.8661 -0.9024 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957944486.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:04 Heat of formation + Delta-G solvation = -68.033495 kcal Electronic energy + Delta-G solvation = -22068.918635 eV Core-core repulsion = 18755.612751 eV Total energy + Delta-G solvation = -3313.305885 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.28006 -39.94643 -38.47978 -36.33626 -36.07130 -33.97168 -31.74035 -30.39386 -29.31710 -28.99728 -27.20698 -25.30417 -23.19854 -22.14999 -21.26222 -20.61517 -19.64486 -19.13462 -18.42220 -17.92969 -17.18704 -16.84621 -16.68112 -16.18410 -15.83125 -15.56096 -15.26869 -14.74486 -14.42173 -13.93080 -13.77730 -13.66341 -13.44351 -13.18162 -13.03957 -13.01358 -12.69194 -12.62038 -12.32565 -12.17736 -12.04528 -12.01478 -11.86386 -11.80814 -11.60598 -10.85881 -10.79137 -10.66197 -10.09054 -9.77688 -8.85635 -7.79002 -5.21235 1.39132 1.46177 1.47174 1.57073 1.61625 2.18565 2.48780 3.28271 3.35794 3.49371 3.61467 3.65871 3.89576 3.91720 3.98873 4.02979 4.27175 4.39442 4.44379 4.60156 4.61870 4.65030 4.79832 4.84192 4.85167 4.92712 4.95808 5.02076 5.09338 5.20047 5.33719 5.39775 5.43528 5.51804 5.63833 5.77576 6.01915 6.28916 6.55369 6.95683 7.11093 7.24111 7.78043 8.40711 9.23285 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.028268 B = 0.003526 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.285597 B = 7940.211457 C = 8436.958424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.066 4.066 3 Si 0.978 3.022 4 H -0.269 1.269 5 H -0.290 1.290 6 H -0.293 1.293 7 C -0.236 4.236 8 H 0.077 0.923 9 N -0.621 5.621 10 C 0.127 3.873 11 C 0.092 3.908 12 H 0.089 0.911 13 O -0.570 6.570 14 C -0.090 4.090 15 H 0.115 0.885 16 C 0.154 3.846 17 N -0.715 5.715 18 C 0.518 3.482 19 O -0.587 6.587 20 C -0.115 4.115 21 C -0.089 4.089 22 C -0.166 4.166 23 C -0.171 4.171 24 C -0.092 4.092 25 C 0.143 3.857 26 H 0.247 0.753 27 H 0.079 0.921 28 H 0.002 0.998 29 H 0.388 0.612 30 H 0.067 0.933 31 H 0.048 0.952 32 H 0.414 0.586 33 H 0.124 0.876 34 H 0.073 0.927 35 H 0.101 0.899 36 H 0.148 0.852 37 H 0.142 0.858 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.012 0.988 41 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.203 -18.891 -3.801 19.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.258 4.258 3 Si 0.807 3.193 4 H -0.194 1.194 5 H -0.217 1.217 6 H -0.220 1.220 7 C -0.365 4.365 8 H 0.095 0.905 9 N -0.347 5.347 10 C 0.001 3.999 11 C 0.031 3.969 12 H 0.107 0.893 13 O -0.378 6.378 14 C -0.109 4.109 15 H 0.133 0.867 16 C 0.030 3.970 17 N -0.366 5.366 18 C 0.306 3.694 19 O -0.467 6.467 20 C -0.136 4.136 21 C -0.126 4.126 22 C -0.184 4.184 23 C -0.189 4.189 24 C -0.130 4.130 25 C 0.018 3.982 26 H 0.057 0.943 27 H 0.097 0.903 28 H 0.020 0.980 29 H 0.237 0.763 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.250 0.750 33 H 0.142 0.858 34 H 0.091 0.909 35 H 0.120 0.880 36 H 0.165 0.835 37 H 0.160 0.840 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.030 0.970 41 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 5.363 -19.269 -3.168 20.250 hybrid contribution -0.127 1.775 -0.071 1.781 sum 5.236 -17.494 -3.239 18.546 Atomic orbital electron populations 1.70000 1.06018 1.24883 1.58859 1.25563 0.96693 1.00756 1.02829 0.85008 0.78060 0.79521 0.76728 1.19358 1.21729 1.22020 1.19465 0.90936 0.83889 1.42205 0.90484 1.44662 1.02602 1.00799 1.86635 1.22443 0.84765 0.95262 0.97395 1.23110 0.97384 0.95283 0.81083 0.89346 1.86383 1.55457 1.76797 1.19120 1.22449 0.95168 0.93455 0.99855 0.86669 1.20887 0.88994 0.91118 0.96004 1.45995 1.35698 1.28110 1.26847 1.20952 0.84217 0.80303 0.83934 1.90671 1.61720 1.69394 1.24931 1.22235 0.96548 0.97163 0.97621 1.21382 1.00618 0.95261 0.95342 1.23438 0.98899 0.97443 0.98628 1.23408 1.00963 0.99742 0.94741 1.21283 1.01681 0.92295 0.97691 1.21428 0.94593 0.84623 0.97603 0.94343 0.90350 0.97966 0.76336 0.91438 0.93390 0.74969 0.85803 0.90873 0.88048 0.83469 0.84016 0.90460 0.91297 0.96969 0.94743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.25 10.09 21.65 0.22 -55.03 16 2 C -0.07 -3.71 5.49 84.86 0.47 -3.24 16 3 Si 0.98 45.48 29.55 68.60 2.03 47.50 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 6 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 7 C -0.24 -13.19 10.27 84.03 0.86 -12.33 16 8 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 9 N -0.62 -31.47 3.40 -691.98 -2.35 -33.82 16 10 C 0.13 5.95 5.62 86.85 0.49 6.44 16 11 C 0.09 3.25 4.17 31.98 0.13 3.39 16 12 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 13 O -0.57 -20.90 12.22 -148.98 -1.82 -22.72 16 14 C -0.09 -2.86 2.95 -9.61 -0.03 -2.88 16 15 H 0.12 3.02 8.14 -2.39 -0.02 3.00 16 16 C 0.15 4.67 4.59 86.38 0.40 5.07 16 17 N -0.72 -17.75 5.39 -463.05 -2.50 -20.24 16 18 C 0.52 13.94 7.06 87.66 0.62 14.56 16 19 O -0.59 -21.09 15.54 -3.04 -0.05 -21.14 16 20 C -0.11 -2.18 3.54 -10.43 -0.04 -2.22 16 21 C -0.09 -1.30 6.37 30.56 0.19 -1.10 16 22 C -0.17 -2.25 10.78 26.29 0.28 -1.97 16 23 C -0.17 -2.59 10.78 26.27 0.28 -2.31 16 24 C -0.09 -1.83 6.16 30.53 0.19 -1.64 16 25 C 0.14 5.69 6.52 86.73 0.57 6.26 16 26 H 0.25 13.97 8.31 -92.70 -0.77 13.20 16 27 H 0.08 4.22 5.87 -2.39 -0.01 4.20 16 28 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 29 H 0.39 11.66 9.12 -74.06 -0.68 10.99 16 30 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.05 1.80 7.44 -2.38 -0.02 1.78 16 32 H 0.41 8.01 8.33 -92.71 -0.77 7.24 16 33 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.07 1.20 7.88 -2.39 -0.02 1.18 16 35 H 0.10 1.05 8.14 -2.39 -0.02 1.04 16 36 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 37 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 38 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.07 1.72 7.01 -2.39 -0.02 1.70 16 40 H 0.01 0.53 7.76 -2.39 -0.02 0.51 16 41 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -72.59 332.59 -0.46 -73.05 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: -0.41 Total: 24.37 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: 4.41 Total: 8.02 kcal Atomic # 7 Polarization: -104.46 SS G_CDS: -4.63 Total: -109.09 kcal Atomic # 8 Polarization: -41.99 SS G_CDS: -1.87 Total: -43.86 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Total: -72.59 -0.46 -73.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957944486.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.016 kcal (2) G-P(sol) polarization free energy of solvation -72.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds