Wall clock time and date at job start Tue Mar 31 2020 02:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86800 * 119.99775 * 2 1 4 4 H 1.48501 * 109.46822 * 269.99498 * 3 2 1 5 5 H 1.48496 * 109.47508 * 29.99529 * 3 2 1 6 6 H 1.48503 * 109.47054 * 150.00280 * 3 2 1 7 7 C 1.38806 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99841 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00052 * 0.02562 * 7 2 1 10 10 C 1.47423 * 125.64659 * 0.02562 * 9 7 2 11 11 C 1.54907 * 104.83164 * 155.82734 * 10 9 7 12 12 H 1.08995 * 111.04204 * 155.09466 * 11 10 9 13 13 O 1.42907 * 111.00472 * 278.93473 * 11 10 9 14 14 C 1.55160 * 101.58514 * 37.00394 * 11 10 9 15 15 H 1.09003 * 110.71679 * 83.04115 * 14 11 10 16 16 C 1.52996 * 110.72474 * 206.13521 * 14 11 10 17 17 N 1.46498 * 109.47059 * 184.99942 * 16 14 11 18 18 C 1.34777 * 119.99828 * 179.72339 * 17 16 14 19 19 O 1.21283 * 120.00222 * 0.28168 * 18 17 16 20 20 C 1.50703 * 120.00290 * 180.27728 * 18 17 16 21 21 C 1.54635 * 111.03340 * 292.02869 * 20 18 17 22 22 C 1.51106 * 104.72240 * 217.32934 * 21 20 18 23 23 C 1.30531 * 111.10415 * 16.43930 * 22 21 20 24 24 C 1.51103 * 111.10370 * 359.97438 * 23 22 21 25 25 C 1.47023 * 125.64671 * 179.97438 * 9 7 2 26 26 H 0.97000 * 119.99733 * 0.02562 * 1 2 3 27 27 H 1.09000 * 110.37349 * 36.98755 * 10 9 7 28 28 H 1.09003 * 110.46079 * 274.70760 * 10 9 7 29 29 H 0.96703 * 113.99654 * 292.19973 * 13 11 10 30 30 H 1.09004 * 109.47066 * 65.00209 * 16 14 11 31 31 H 1.08994 * 109.46974 * 305.00357 * 16 14 11 32 32 H 0.97001 * 120.00384 * 0.02562 * 17 16 14 33 33 H 1.09003 * 110.90824 * 56.03334 * 20 18 17 34 34 H 1.08992 * 110.38771 * 336.13825 * 21 20 18 35 35 H 1.08999 * 110.38991 * 98.52505 * 21 20 18 36 36 H 1.07998 * 124.44997 * 196.46090 * 22 21 20 37 37 H 1.07997 * 124.44741 * 180.02562 * 23 22 21 38 38 H 1.08998 * 110.39054 * 224.75163 * 24 23 22 39 39 H 1.09008 * 110.38363 * 102.37543 * 24 23 22 40 40 H 1.09000 * 109.87922 * 61.69528 * 25 9 7 41 41 H 1.08991 * 109.88699 * 300.52372 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1415 -2.5331 -0.0005 11 6 -0.4012 -3.9319 -0.6133 12 1 -1.3587 -4.3330 -0.2812 13 8 -0.3351 -3.8864 -2.0401 14 6 0.7785 -4.7524 -0.0280 15 1 0.5440 -5.1012 0.9778 16 6 1.1238 -5.9308 -0.9406 17 7 2.1571 -6.7532 -0.3064 18 6 2.6167 -7.8565 -0.9293 19 8 2.1787 -8.1656 -2.0172 20 6 3.6751 -8.7060 -0.2742 21 6 5.0236 -7.9528 -0.1993 22 6 6.0701 -9.0129 -0.4526 23 6 5.5382 -10.0821 -0.9795 24 6 4.0480 -9.9136 -1.1649 25 6 1.9319 -3.7274 0.0005 26 1 -0.4850 0.8401 -0.0004 27 1 -0.5989 -1.7585 -0.6160 28 1 -0.5297 -2.4867 1.0170 29 1 -1.0521 -3.3842 -2.4512 30 1 1.4934 -5.5552 -1.8949 31 1 0.2316 -6.5339 -1.1085 32 1 2.5073 -6.5062 0.5638 33 1 3.3539 -9.0338 0.7145 34 1 5.0708 -7.1814 -0.9678 35 1 5.1591 -7.5141 0.7893 36 1 7.1203 -8.9008 -0.2269 37 1 6.0904 -10.9708 -1.2470 38 1 3.5205 -10.8079 -0.8332 39 1 3.8170 -9.7005 -2.2087 40 1 2.5275 -3.8647 0.9030 41 1 2.5590 -3.8506 -0.8823 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957944487.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:08 Heat of formation + Delta-G solvation = -43.533721 kcal Electronic energy + Delta-G solvation = -22108.216213 eV Core-core repulsion = 18795.972718 eV Total energy + Delta-G solvation = -3312.243495 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.22172 -38.47806 -37.50345 -34.86447 -34.50969 -32.21330 -30.34941 -29.16053 -28.31919 -27.63852 -25.47504 -23.74611 -22.08237 -20.50323 -19.95921 -19.34494 -18.96187 -17.38245 -17.29189 -16.42511 -16.29990 -15.53954 -14.94125 -14.81683 -14.45646 -14.08664 -13.78868 -13.16016 -12.96487 -12.80734 -12.53432 -12.34683 -12.29865 -12.00632 -11.80054 -11.45619 -11.37964 -11.28743 -11.24544 -10.80613 -10.66384 -10.38081 -10.18559 -10.01821 -9.84139 -9.63624 -9.10588 -9.08656 -8.88047 -8.68929 -6.85170 -5.69854 -3.09922 2.05589 2.69785 3.27250 3.38412 3.43432 3.44979 4.30120 4.43198 4.45955 4.71473 4.79828 5.00595 5.07521 5.16868 5.32122 5.38806 5.40345 5.47518 5.50668 5.59241 5.62553 5.69526 5.78860 5.90861 6.00715 6.08100 6.12247 6.30741 6.35220 6.43452 6.53130 6.66308 6.67127 6.85296 7.27294 7.56724 7.60553 7.74524 8.22911 8.30900 8.37219 9.17749 9.79207 10.43160 11.35011 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.024214 B = 0.003772 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.094589 B = 7422.281993 C = 8281.475352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.012 4.012 3 Si 0.916 3.084 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.219 4.219 8 H 0.077 0.923 9 N -0.598 5.598 10 C 0.126 3.874 11 C 0.082 3.918 12 H 0.054 0.946 13 O -0.557 6.557 14 C -0.106 4.106 15 H 0.085 0.915 16 C 0.140 3.860 17 N -0.725 5.725 18 C 0.520 3.480 19 O -0.542 6.542 20 C -0.117 4.117 21 C -0.091 4.091 22 C -0.168 4.168 23 C -0.164 4.164 24 C -0.088 4.088 25 C 0.145 3.855 26 H 0.252 0.748 27 H 0.112 0.888 28 H 0.019 0.981 29 H 0.375 0.625 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.400 0.600 33 H 0.104 0.896 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.073 0.927 39 H 0.095 0.905 40 H 0.019 0.981 41 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.053 -16.886 1.778 17.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.207 4.207 3 Si 0.746 3.254 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.347 4.347 8 H 0.095 0.905 9 N -0.324 5.324 10 C 0.001 3.999 11 C 0.021 3.979 12 H 0.072 0.928 13 O -0.363 6.363 14 C -0.125 4.125 15 H 0.103 0.897 16 C 0.017 3.983 17 N -0.376 5.376 18 C 0.305 3.695 19 O -0.420 6.420 20 C -0.138 4.138 21 C -0.128 4.128 22 C -0.186 4.186 23 C -0.182 4.182 24 C -0.125 4.125 25 C 0.019 3.981 26 H 0.062 0.938 27 H 0.129 0.871 28 H 0.037 0.963 29 H 0.222 0.778 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.234 0.766 33 H 0.122 0.878 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.091 0.909 39 H 0.113 0.887 40 H 0.037 0.963 41 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 5.222 -17.211 1.108 18.020 hybrid contribution 0.166 1.352 0.536 1.464 sum 5.388 -15.859 1.643 16.830 Atomic orbital electron populations 1.69751 1.04914 1.24764 1.58052 1.24765 0.95755 0.97726 1.02503 0.86050 0.78495 0.83218 0.77612 1.21572 1.21674 1.20746 1.19089 0.90528 0.82436 1.42634 0.90481 1.44346 1.01532 0.99786 1.86691 1.22580 0.85738 0.93003 0.98590 1.23209 0.95130 0.98141 0.81412 0.92829 1.86400 1.54327 1.76629 1.18917 1.22505 0.97385 0.94426 0.98214 0.89667 1.21235 0.90087 0.90262 0.96730 1.46134 1.41894 1.26433 1.23127 1.20326 0.82537 0.81037 0.85573 1.90688 1.59234 1.71171 1.20861 1.22179 0.94508 0.96381 1.00775 1.21329 0.90953 0.97651 1.02872 1.23224 0.99178 0.95319 1.00915 1.23311 0.96321 0.98731 0.99843 1.21285 0.93239 0.96515 1.01461 1.21310 0.93345 0.85606 0.97791 0.93757 0.87073 0.96338 0.77836 0.90314 0.91833 0.76631 0.87822 0.89985 0.90229 0.85607 0.85681 0.90867 0.88687 0.96333 0.95412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.48 10.09 55.49 0.56 -25.92 16 2 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 3 Si 0.92 21.98 29.55 -169.99 -5.02 16.95 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.22 -6.07 10.27 -15.06 -0.15 -6.23 16 8 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 9 N -0.60 -15.12 3.39 -170.08 -0.58 -15.69 16 10 C 0.13 2.95 5.62 -2.53 -0.01 2.93 16 11 C 0.08 1.50 4.17 -24.58 -0.10 1.40 16 12 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 13 O -0.56 -10.38 12.33 -35.23 -0.43 -10.82 16 14 C -0.11 -1.78 2.89 -88.78 -0.26 -2.04 16 15 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 16 C 0.14 2.22 4.50 -4.04 -0.02 2.20 16 17 N -0.73 -9.54 5.47 -60.30 -0.33 -9.87 16 18 C 0.52 7.20 7.06 -10.98 -0.08 7.12 16 19 O -0.54 -9.66 15.51 5.55 0.09 -9.58 16 20 C -0.12 -1.21 3.54 -90.06 -0.32 -1.53 16 21 C -0.09 -0.87 6.37 -26.82 -0.17 -1.04 16 22 C -0.17 -1.50 10.78 -35.70 -0.38 -1.88 16 23 C -0.16 -1.47 10.78 -35.70 -0.38 -1.85 16 24 C -0.09 -0.91 6.18 -26.84 -0.17 -1.07 16 25 C 0.15 2.98 6.75 -3.06 -0.02 2.96 16 26 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 27 H 0.11 2.91 5.87 -51.93 -0.30 2.61 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.37 5.71 9.12 45.56 0.42 6.12 16 30 H 0.08 1.48 7.52 -51.93 -0.39 1.09 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.40 4.32 8.47 -40.82 -0.35 3.97 16 33 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.08 0.90 7.88 -51.93 -0.41 0.50 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.09 1.19 6.96 -51.92 -0.36 0.83 16 40 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.03 0.60 7.68 -51.93 -0.40 0.20 16 LS Contribution 332.96 15.07 5.02 5.02 Total: -1.00 -32.92 332.96 -8.44 -41.36 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -5.57 Total: 8.03 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -2.17 Total: 0.53 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: -0.35 Total: -51.49 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -0.35 Total: -20.40 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.92 -8.44 -41.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957944487.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.178 kcal (2) G-P(sol) polarization free energy of solvation -32.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds