Wall clock time and date at job start Tue Mar 31 2020 02:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86800 * 119.99775 * 2 1 4 4 H 1.48501 * 109.46822 * 269.99498 * 3 2 1 5 5 H 1.48496 * 109.47508 * 29.99529 * 3 2 1 6 6 H 1.48503 * 109.47054 * 150.00280 * 3 2 1 7 7 C 1.38806 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99841 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00052 * 0.02562 * 7 2 1 10 10 C 1.47423 * 125.64659 * 0.02562 * 9 7 2 11 11 C 1.54907 * 104.83164 * 155.82734 * 10 9 7 12 12 H 1.08995 * 111.04204 * 155.09466 * 11 10 9 13 13 O 1.42907 * 111.00472 * 278.93473 * 11 10 9 14 14 C 1.55160 * 101.58514 * 37.00394 * 11 10 9 15 15 H 1.09003 * 110.71679 * 83.04115 * 14 11 10 16 16 C 1.52996 * 110.72474 * 206.13521 * 14 11 10 17 17 N 1.46498 * 109.47059 * 184.99942 * 16 14 11 18 18 C 1.34777 * 119.99828 * 179.72339 * 17 16 14 19 19 O 1.21283 * 120.00222 * 0.28168 * 18 17 16 20 20 C 1.50703 * 120.00290 * 180.27728 * 18 17 16 21 21 C 1.54635 * 111.03340 * 292.02869 * 20 18 17 22 22 C 1.51106 * 104.72240 * 217.32934 * 21 20 18 23 23 C 1.30531 * 111.10415 * 16.43930 * 22 21 20 24 24 C 1.51103 * 111.10370 * 359.97438 * 23 22 21 25 25 C 1.47023 * 125.64671 * 179.97438 * 9 7 2 26 26 H 0.97000 * 119.99733 * 0.02562 * 1 2 3 27 27 H 1.09000 * 110.37349 * 36.98755 * 10 9 7 28 28 H 1.09003 * 110.46079 * 274.70760 * 10 9 7 29 29 H 0.96703 * 113.99654 * 292.19973 * 13 11 10 30 30 H 1.09004 * 109.47066 * 65.00209 * 16 14 11 31 31 H 1.08994 * 109.46974 * 305.00357 * 16 14 11 32 32 H 0.97001 * 120.00384 * 0.02562 * 17 16 14 33 33 H 1.09003 * 110.90824 * 56.03334 * 20 18 17 34 34 H 1.08992 * 110.38771 * 336.13825 * 21 20 18 35 35 H 1.08999 * 110.38991 * 98.52505 * 21 20 18 36 36 H 1.07998 * 124.44997 * 196.46090 * 22 21 20 37 37 H 1.07997 * 124.44741 * 180.02562 * 23 22 21 38 38 H 1.08998 * 110.39054 * 224.75163 * 24 23 22 39 39 H 1.09008 * 110.38363 * 102.37543 * 24 23 22 40 40 H 1.09000 * 109.87922 * 61.69528 * 25 9 7 41 41 H 1.08991 * 109.88699 * 300.52372 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1415 -2.5331 -0.0005 11 6 -0.4012 -3.9319 -0.6133 12 1 -1.3587 -4.3330 -0.2812 13 8 -0.3351 -3.8864 -2.0401 14 6 0.7785 -4.7524 -0.0280 15 1 0.5440 -5.1012 0.9778 16 6 1.1238 -5.9308 -0.9406 17 7 2.1571 -6.7532 -0.3064 18 6 2.6167 -7.8565 -0.9293 19 8 2.1787 -8.1656 -2.0172 20 6 3.6751 -8.7060 -0.2742 21 6 5.0236 -7.9528 -0.1993 22 6 6.0701 -9.0129 -0.4526 23 6 5.5382 -10.0821 -0.9795 24 6 4.0480 -9.9136 -1.1649 25 6 1.9319 -3.7274 0.0005 26 1 -0.4850 0.8401 -0.0004 27 1 -0.5989 -1.7585 -0.6160 28 1 -0.5297 -2.4867 1.0170 29 1 -1.0521 -3.3842 -2.4512 30 1 1.4934 -5.5552 -1.8949 31 1 0.2316 -6.5339 -1.1085 32 1 2.5073 -6.5062 0.5638 33 1 3.3539 -9.0338 0.7145 34 1 5.0708 -7.1814 -0.9678 35 1 5.1591 -7.5141 0.7893 36 1 7.1203 -8.9008 -0.2269 37 1 6.0904 -10.9708 -1.2470 38 1 3.5205 -10.8079 -0.8332 39 1 3.8170 -9.7005 -2.2087 40 1 2.5275 -3.8647 0.9030 41 1 2.5590 -3.8506 -0.8823 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957944487.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:07 Heat of formation + Delta-G solvation = -67.910105 kcal Electronic energy + Delta-G solvation = -22109.273252 eV Core-core repulsion = 18795.972718 eV Total energy + Delta-G solvation = -3313.300534 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.27803 -39.94600 -38.48791 -36.33371 -36.07076 -33.97866 -31.73960 -30.39613 -29.32079 -29.02254 -27.19336 -25.30639 -23.18116 -22.14391 -21.33580 -20.56939 -19.66201 -19.12741 -18.47806 -17.86982 -17.20696 -16.85179 -16.68370 -16.13251 -15.75470 -15.67253 -15.34475 -14.58655 -14.42184 -14.01392 -13.80079 -13.70357 -13.39928 -13.17512 -13.03724 -13.01940 -12.67635 -12.61024 -12.34218 -12.19610 -12.05248 -12.02845 -11.86220 -11.82159 -11.59781 -10.85914 -10.78529 -10.66113 -10.09446 -9.78725 -8.85558 -7.78749 -5.21090 1.37829 1.46277 1.48016 1.56219 1.61361 2.18566 2.49003 3.28141 3.35565 3.49826 3.61731 3.65629 3.87440 3.94431 3.98178 4.03056 4.26694 4.38699 4.44501 4.59112 4.60831 4.66096 4.79493 4.82605 4.84639 4.92438 4.95229 5.01684 5.09231 5.20153 5.32249 5.39598 5.44310 5.51599 5.63063 5.77601 6.00598 6.28994 6.55727 6.95640 7.11167 7.24542 7.78151 8.40849 9.23323 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.024214 B = 0.003772 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.094589 B = 7422.281993 C = 8281.475352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.065 4.065 3 Si 0.978 3.022 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.271 1.271 7 C -0.237 4.237 8 H 0.077 0.923 9 N -0.621 5.621 10 C 0.127 3.873 11 C 0.091 3.909 12 H 0.089 0.911 13 O -0.571 6.571 14 C -0.090 4.090 15 H 0.116 0.884 16 C 0.155 3.845 17 N -0.715 5.715 18 C 0.518 3.482 19 O -0.587 6.587 20 C -0.111 4.111 21 C -0.092 4.092 22 C -0.170 4.170 23 C -0.168 4.168 24 C -0.092 4.092 25 C 0.143 3.857 26 H 0.247 0.753 27 H 0.079 0.921 28 H 0.003 0.997 29 H 0.388 0.612 30 H 0.045 0.955 31 H 0.067 0.933 32 H 0.414 0.586 33 H 0.133 0.867 34 H 0.062 0.938 35 H 0.100 0.900 36 H 0.145 0.855 37 H 0.144 0.856 38 H 0.084 0.916 39 H 0.067 0.933 40 H 0.034 0.966 41 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.040 -18.258 3.124 19.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.258 4.258 3 Si 0.807 3.193 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.196 1.196 7 C -0.366 4.366 8 H 0.095 0.905 9 N -0.347 5.347 10 C 0.001 3.999 11 C 0.031 3.969 12 H 0.107 0.893 13 O -0.378 6.378 14 C -0.109 4.109 15 H 0.134 0.866 16 C 0.031 3.969 17 N -0.367 5.367 18 C 0.305 3.695 19 O -0.467 6.467 20 C -0.132 4.132 21 C -0.129 4.129 22 C -0.188 4.188 23 C -0.186 4.186 24 C -0.129 4.129 25 C 0.018 3.982 26 H 0.057 0.943 27 H 0.097 0.903 28 H 0.020 0.980 29 H 0.237 0.763 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.251 0.749 33 H 0.151 0.849 34 H 0.080 0.920 35 H 0.119 0.881 36 H 0.162 0.838 37 H 0.161 0.839 38 H 0.103 0.897 39 H 0.085 0.915 40 H 0.052 0.948 41 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges 6.227 -18.600 2.477 19.771 hybrid contribution -0.134 1.778 0.083 1.785 sum 6.093 -16.823 2.561 18.074 Atomic orbital electron populations 1.69994 1.06008 1.24962 1.58776 1.25562 0.96692 1.00747 1.02782 0.85079 0.77677 0.79230 0.77352 1.21592 1.21837 1.19554 1.19426 0.90935 0.83916 1.42370 0.90520 1.44655 1.02600 1.00792 1.86651 1.22437 0.84754 0.95267 0.97394 1.23133 0.97382 0.95309 0.81078 0.89318 1.86387 1.55465 1.76792 1.19144 1.22452 0.95133 0.93456 0.99870 0.86584 1.20869 0.90725 0.90107 0.95173 1.46002 1.41218 1.25890 1.23554 1.20974 0.82556 0.80968 0.84973 1.90673 1.60838 1.72282 1.22925 1.22227 0.93614 0.95703 1.01636 1.21365 0.90715 0.97453 1.03409 1.23405 0.99904 0.94760 1.00694 1.23435 0.95430 0.99719 0.99969 1.21298 0.94707 0.97044 0.99896 1.21433 0.94564 0.84630 0.97538 0.94333 0.90344 0.97961 0.76339 0.93622 0.91435 0.74914 0.84905 0.91983 0.88138 0.83761 0.83867 0.89715 0.91499 0.94792 0.97055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.27 10.09 21.65 0.22 -55.05 16 2 C -0.07 -3.68 5.49 84.86 0.47 -3.21 16 3 Si 0.98 45.49 29.55 68.60 2.03 47.52 16 4 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 5 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 7 C -0.24 -13.31 10.27 84.03 0.86 -12.45 16 8 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 9 N -0.62 -31.56 3.39 -692.01 -2.35 -33.90 16 10 C 0.13 5.96 5.62 86.85 0.49 6.45 16 11 C 0.09 3.24 4.17 31.99 0.13 3.37 16 12 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 13 O -0.57 -20.97 12.33 -148.98 -1.84 -22.80 16 14 C -0.09 -2.86 2.89 -9.60 -0.03 -2.88 16 15 H 0.12 3.03 8.14 -2.39 -0.02 3.01 16 16 C 0.16 4.72 4.50 86.38 0.39 5.11 16 17 N -0.72 -17.56 5.47 -463.07 -2.53 -20.09 16 18 C 0.52 13.79 7.06 87.66 0.62 14.41 16 19 O -0.59 -21.03 15.51 -3.04 -0.05 -21.07 16 20 C -0.11 -2.06 3.54 -10.43 -0.04 -2.10 16 21 C -0.09 -1.56 6.37 30.53 0.19 -1.37 16 22 C -0.17 -2.59 10.78 26.26 0.28 -2.31 16 23 C -0.17 -2.64 10.78 26.26 0.28 -2.36 16 24 C -0.09 -1.79 6.18 30.53 0.19 -1.60 16 25 C 0.14 5.76 6.75 86.73 0.59 6.35 16 26 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 27 H 0.08 4.22 5.87 -2.39 -0.01 4.21 16 28 H 0.00 0.12 8.14 -2.39 -0.02 0.11 16 29 H 0.39 11.69 9.12 -74.06 -0.68 11.02 16 30 H 0.05 1.72 7.52 -2.38 -0.02 1.70 16 31 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.41 7.79 8.47 -92.71 -0.79 7.01 16 33 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.06 1.31 7.88 -2.39 -0.02 1.29 16 35 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 37 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 38 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.07 1.69 6.96 -2.38 -0.02 1.68 16 40 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.01 0.49 7.68 -2.39 -0.02 0.48 16 Total: -1.00 -72.84 332.96 -0.51 -73.36 By element: Atomic # 1 Polarization: 25.05 SS G_CDS: -0.42 Total: 24.63 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: 4.43 Total: 7.42 kcal Atomic # 7 Polarization: -104.38 SS G_CDS: -4.66 Total: -109.05 kcal Atomic # 8 Polarization: -41.99 SS G_CDS: -1.88 Total: -43.88 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -72.84 -0.51 -73.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957944487.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.449 kcal (2) G-P(sol) polarization free energy of solvation -72.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds