Wall clock time and date at job start Tue Mar 31 2020 02:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86800 * 120.00339 * 2 1 4 4 H 1.48498 * 109.47312 * 274.98929 * 3 2 1 5 5 H 1.48507 * 109.46941 * 34.98495 * 3 2 1 6 6 H 1.48502 * 109.47557 * 154.98319 * 3 2 1 7 7 C 1.38819 * 120.00147 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99731 * 186.83346 * 7 2 1 9 9 N 1.36935 * 119.99636 * 6.82279 * 7 2 1 10 10 C 1.47024 * 125.65064 * 353.94932 * 9 7 2 11 11 C 1.54325 * 107.26660 * 181.02021 * 10 9 7 12 12 H 1.09004 * 110.87068 * 263.75552 * 11 10 9 13 13 O 1.42902 * 110.71646 * 140.55873 * 11 10 9 14 14 C 1.55151 * 102.94677 * 22.19261 * 11 10 9 15 15 H 1.09009 * 110.99911 * 82.60678 * 14 11 10 16 16 C 1.52995 * 111.00717 * 206.42093 * 14 11 10 17 17 N 1.46494 * 109.47302 * 185.00294 * 16 14 11 18 18 C 1.34779 * 120.00159 * 180.02562 * 17 16 14 19 19 O 1.21287 * 119.99821 * 359.97438 * 18 17 16 20 20 C 1.50702 * 120.00038 * 179.97438 * 18 17 16 21 21 C 1.54628 * 111.03776 * 295.33285 * 20 18 17 22 22 C 1.51168 * 104.69325 * 217.36186 * 21 20 18 23 23 C 1.30522 * 111.11983 * 16.38264 * 22 21 20 24 24 C 1.51094 * 111.10758 * 0.03481 * 23 22 21 25 25 C 1.47425 * 125.64448 * 173.90221 * 9 7 2 26 26 H 0.97000 * 120.00054 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.87864 * 61.60505 * 10 9 7 28 28 H 1.08992 * 109.88157 * 300.43816 * 10 9 7 29 29 H 0.96703 * 114.00364 * 66.47539 * 13 11 10 30 30 H 1.09009 * 109.46964 * 305.00300 * 16 14 11 31 31 H 1.09001 * 109.47120 * 64.99855 * 16 14 11 32 32 H 0.96997 * 120.00268 * 359.97438 * 17 16 14 33 33 H 1.09000 * 110.91236 * 59.30151 * 20 18 17 34 34 H 1.09000 * 110.39112 * 336.14489 * 21 20 18 35 35 H 1.09000 * 110.38651 * 98.52299 * 21 20 18 36 36 H 1.08010 * 124.43149 * 196.42997 * 22 21 20 37 37 H 1.08001 * 124.44357 * 180.02562 * 23 22 21 38 38 H 1.09001 * 110.39332 * 224.75361 * 24 23 22 39 39 H 1.09001 * 110.48764 * 102.41673 * 24 23 22 40 40 H 1.09002 * 110.36800 * 37.07704 * 25 9 7 41 41 H 1.09000 * 110.37091 * 274.74809 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1073 -1.3947 5 1 1.5043 2.6200 0.8028 6 1 3.5965 1.4120 0.5921 7 6 2.0102 -1.2022 -0.0005 8 1 3.0845 -1.2055 0.1107 9 7 1.3328 -2.3838 -0.1420 10 6 -0.1293 -2.5346 -0.1757 11 6 -0.4312 -4.0408 -0.3232 12 1 -0.6024 -4.3021 -1.3675 13 8 -1.5535 -4.4124 0.4796 14 6 0.8661 -4.7086 0.2042 15 1 0.8581 -4.7724 1.2924 16 6 1.0653 -6.0903 -0.4218 17 7 2.2302 -6.7384 0.1858 18 6 2.5993 -7.9719 -0.2128 19 8 1.9668 -8.5454 -1.0742 20 6 3.7980 -8.6383 0.4118 21 6 5.0961 -7.8636 0.0866 22 6 6.1421 -8.9360 -0.1158 23 6 5.5890 -10.1037 -0.3002 24 6 4.0820 -10.0055 -0.2527 25 6 1.9488 -3.7153 -0.2866 26 1 -0.4850 0.8400 0.0004 27 1 -0.5386 -1.9894 -1.0262 28 1 -0.5622 -2.1587 0.7513 29 1 -2.3898 -4.0212 0.1918 30 1 0.1783 -6.6996 -0.2473 31 1 1.2273 -5.9833 -1.4944 32 1 2.7362 -6.2796 0.8744 33 1 3.6661 -8.7464 1.4884 34 1 4.9711 -7.2786 -0.8246 35 1 5.3709 -7.2165 0.9196 36 1 7.2076 -8.7591 -0.1079 37 1 6.1366 -11.0198 -0.4653 38 1 3.6675 -10.8138 0.3498 39 1 3.6660 -10.0319 -1.2598 40 1 2.8415 -3.7898 0.3346 41 1 2.1951 -3.9081 -1.3307 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957944488.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:10 Heat of formation + Delta-G solvation = -47.667599 kcal Electronic energy + Delta-G solvation = -21958.866842 eV Core-core repulsion = 18646.444089 eV Total energy + Delta-G solvation = -3312.422753 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.26184 -38.46854 -37.54202 -35.17045 -34.64189 -32.28647 -30.40428 -29.17641 -28.32977 -27.52732 -25.52786 -23.73096 -22.11653 -20.48877 -20.21344 -19.47319 -18.98525 -17.45154 -16.96270 -16.64689 -16.41439 -15.71525 -15.11371 -14.96714 -14.45772 -14.00994 -13.72642 -13.22898 -12.99765 -12.69167 -12.59559 -12.42532 -12.36114 -12.08206 -11.81684 -11.52918 -11.48881 -11.33701 -11.23301 -10.96410 -10.84852 -10.61073 -10.09044 -10.00890 -9.83601 -9.70065 -9.23469 -9.11192 -8.95390 -8.66563 -6.92683 -5.79926 -3.13494 2.03612 2.64856 3.20878 3.36065 3.41265 3.43352 4.26942 4.39739 4.41929 4.68749 4.75890 4.97194 5.01937 5.08390 5.19209 5.36539 5.41163 5.45887 5.48279 5.57177 5.65806 5.67451 5.76784 5.84156 5.97802 6.01377 6.03400 6.20022 6.28542 6.33189 6.43203 6.55680 6.64681 6.80109 7.37219 7.45996 7.55332 7.71611 8.15880 8.17073 8.25153 9.12429 9.73326 10.38096 11.32084 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.021701 B = 0.003794 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.945478 B = 7378.893868 C = 8512.022263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.006 4.006 3 Si 0.912 3.088 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.232 4.232 8 H 0.080 0.920 9 N -0.603 5.603 10 C 0.151 3.849 11 C 0.083 3.917 12 H 0.057 0.943 13 O -0.567 6.567 14 C -0.108 4.108 15 H 0.089 0.911 16 C 0.132 3.868 17 N -0.722 5.722 18 C 0.521 3.479 19 O -0.544 6.544 20 C -0.117 4.117 21 C -0.091 4.091 22 C -0.168 4.168 23 C -0.164 4.164 24 C -0.087 4.087 25 C 0.142 3.858 26 H 0.253 0.747 27 H 0.048 0.952 28 H 0.054 0.946 29 H 0.376 0.624 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.402 0.598 33 H 0.105 0.895 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.073 0.927 39 H 0.094 0.906 40 H 0.042 0.958 41 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.726 -16.210 1.178 17.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.360 4.360 8 H 0.098 0.902 9 N -0.330 5.330 10 C 0.026 3.974 11 C 0.023 3.977 12 H 0.075 0.925 13 O -0.372 6.372 14 C -0.127 4.127 15 H 0.107 0.893 16 C 0.009 3.991 17 N -0.373 5.373 18 C 0.307 3.693 19 O -0.422 6.422 20 C -0.139 4.139 21 C -0.129 4.129 22 C -0.186 4.186 23 C -0.182 4.182 24 C -0.124 4.124 25 C 0.016 3.984 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.223 0.777 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.236 0.764 33 H 0.123 0.877 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.092 0.908 39 H 0.112 0.888 40 H 0.060 0.940 41 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 6.648 -16.704 0.893 18.000 hybrid contribution 0.285 1.542 0.043 1.569 sum 6.933 -15.161 0.936 16.697 Atomic orbital electron populations 1.69952 1.04987 1.25200 1.56566 1.24837 0.95730 0.97790 1.01905 0.86095 0.78682 0.83420 0.77540 1.21550 1.21719 1.20565 1.19072 0.91125 0.82388 1.43460 0.90235 1.44310 1.01281 1.01205 1.86183 1.21831 0.85305 0.88537 1.01725 1.23125 0.84977 0.97158 0.92477 0.92541 1.86419 1.18532 1.74137 1.58106 1.22610 0.96112 0.92729 1.01278 0.89281 1.21378 0.87704 0.92593 0.97454 1.46044 1.31680 1.17286 1.42255 1.20347 0.85275 0.81272 0.82434 1.90683 1.55210 1.64217 1.32044 1.22186 0.93330 0.96788 1.01552 1.21354 0.91486 0.97417 1.02620 1.23235 0.99054 0.94791 1.01541 1.23309 0.95957 0.98246 1.00698 1.21275 0.93461 0.95149 1.02534 1.21614 0.93960 0.85446 0.97400 0.93658 0.93349 0.92767 0.77709 0.91255 0.91413 0.76359 0.87651 0.89994 0.90159 0.85593 0.85668 0.90826 0.88788 0.93964 0.95893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.51 10.36 55.49 0.57 -25.93 16 2 C -0.01 -0.17 5.48 -17.43 -0.10 -0.26 16 3 Si 0.91 21.70 29.56 -169.99 -5.02 16.67 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.23 -6.34 10.26 -15.06 -0.15 -6.49 16 8 H 0.08 2.08 7.84 -52.49 -0.41 1.67 16 9 N -0.60 -14.96 3.39 -170.07 -0.58 -15.54 16 10 C 0.15 3.57 5.15 -3.06 -0.02 3.55 16 11 C 0.08 1.53 3.80 -24.90 -0.09 1.43 16 12 H 0.06 0.98 8.04 -51.93 -0.42 0.56 16 13 O -0.57 -9.80 13.39 -35.23 -0.47 -10.27 16 14 C -0.11 -1.83 2.77 -88.48 -0.25 -2.07 16 15 H 0.09 1.57 8.14 -51.92 -0.42 1.14 16 16 C 0.13 1.98 5.13 -4.05 -0.02 1.96 16 17 N -0.72 -9.20 5.49 -60.29 -0.33 -9.53 16 18 C 0.52 6.95 7.06 -10.98 -0.08 6.87 16 19 O -0.54 -9.28 15.53 5.55 0.09 -9.19 16 20 C -0.12 -1.18 3.54 -90.05 -0.32 -1.50 16 21 C -0.09 -0.83 6.37 -26.80 -0.17 -1.00 16 22 C -0.17 -1.44 10.78 -35.66 -0.38 -1.82 16 23 C -0.16 -1.42 10.77 -35.70 -0.38 -1.80 16 24 C -0.09 -0.87 6.16 -26.83 -0.17 -1.04 16 25 C 0.14 2.77 6.65 -2.53 -0.02 2.76 16 26 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 27 H 0.05 1.25 7.37 -51.93 -0.38 0.87 16 28 H 0.05 1.44 7.46 -51.93 -0.39 1.05 16 29 H 0.38 5.04 9.12 45.56 0.42 5.45 16 30 H 0.07 1.09 8.14 -51.92 -0.42 0.67 16 31 H 0.07 1.06 7.96 -51.93 -0.41 0.65 16 32 H 0.40 4.33 8.47 -40.82 -0.35 3.99 16 33 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.08 0.83 7.88 -51.93 -0.41 0.43 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.13 0.88 8.06 -52.48 -0.42 0.45 16 37 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.09 1.13 7.00 -51.93 -0.36 0.77 16 40 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.02 0.46 7.91 -51.93 -0.41 0.04 16 LS Contribution 335.31 15.07 5.05 5.05 Total: -1.00 -32.62 335.31 -8.48 -41.10 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -5.64 Total: 7.06 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -2.14 Total: 0.59 kcal Atomic # 7 Polarization: -50.67 SS G_CDS: -0.33 Total: -51.01 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.39 Total: -19.46 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.62 -8.48 -41.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957944488.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.571 kcal (2) G-P(sol) polarization free energy of solvation -32.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds